Wall clock time and date at job start Mon Mar 30 2020 07:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47232 * 2 1 4 4 H 1.08998 * 109.47038 * 305.73661 * 3 2 1 5 5 C 1.50697 * 109.47218 * 185.73248 * 3 2 1 6 6 H 1.07993 * 120.00503 * 240.00096 * 5 3 2 7 7 C 1.37880 * 119.99608 * 60.00356 * 5 3 2 8 8 N 1.31512 * 120.00525 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99573 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47597 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46922 * 120.00202 * 9 7 5 12 12 H 1.48504 * 109.47042 * 239.99449 * 9 7 5 13 13 N 1.46906 * 109.46797 * 65.73278 * 3 2 1 14 14 C 1.46903 * 110.99723 * 193.77847 * 13 3 2 15 15 C 1.46903 * 110.99518 * 69.82530 * 13 3 2 16 16 C 1.53003 * 109.46632 * 199.57856 * 15 13 3 17 17 H 1.09004 * 115.55059 * 29.42188 * 16 15 13 18 18 C 1.53002 * 117.50148 * 243.74823 * 16 15 13 19 19 C 1.53004 * 117.51491 * 175.11819 * 16 15 13 20 20 H 1.08996 * 117.49547 * 214.97028 * 19 16 15 21 21 C 1.52992 * 117.49809 * 359.97438 * 19 16 15 22 22 H 1.08995 * 115.55336 * 34.32864 * 21 19 16 23 23 C 1.52998 * 117.49955 * 248.61766 * 21 19 16 24 24 C 1.53002 * 60.00258 * 252.51380 * 23 21 19 25 25 H 1.08997 * 117.51813 * 107.48219 * 24 23 21 26 26 C 1.52998 * 117.49846 * 252.50999 * 24 23 21 27 27 H 1.08999 * 109.47472 * 54.73841 * 1 2 3 28 28 H 1.09000 * 109.47133 * 174.74771 * 1 2 3 29 29 H 1.09001 * 109.46939 * 294.74123 * 1 2 3 30 30 H 1.09000 * 109.46860 * 240.00607 * 2 1 3 31 31 H 1.09003 * 109.47596 * 120.00281 * 2 1 3 32 32 H 0.96998 * 120.00201 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46719 * 296.04597 * 14 13 3 34 34 H 1.08999 * 109.47039 * 56.04808 * 14 13 3 35 35 H 1.08999 * 109.46553 * 176.04849 * 14 13 3 36 36 H 1.08996 * 109.46801 * 79.58492 * 15 13 3 37 37 H 1.09001 * 109.47559 * 319.58060 * 15 13 3 38 38 H 1.08996 * 117.49371 * 359.97438 * 18 16 15 39 39 H 1.08998 * 117.49962 * 144.99776 * 18 16 15 40 40 H 1.09008 * 117.49541 * 0.02562 * 23 21 19 41 41 H 1.08998 * 117.50094 * 145.02313 * 23 21 19 42 42 H 1.09004 * 109.47317 * 128.61796 * 26 24 23 43 43 H 1.08997 * 109.47392 * 248.62581 * 26 24 23 44 44 H 1.09003 * 109.47227 * 8.62275 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5952 1.9852 -0.8342 5 6 3.5403 1.4449 -0.1419 6 1 4.1549 1.8861 0.6287 7 6 4.1282 0.8838 -1.2557 8 7 3.3798 0.3460 -2.1940 9 14 5.9879 0.8873 -1.4320 10 1 6.5960 1.5483 -0.2494 11 1 6.4789 -0.5110 -1.5251 12 1 6.3671 1.6280 -2.6620 13 7 1.6665 2.0939 1.2627 14 6 1.8426 3.5498 1.1762 15 6 2.4294 1.5372 2.3879 16 6 1.7087 1.8552 3.6995 17 1 0.6248 1.9471 3.6301 18 6 2.4314 2.7572 4.7021 19 6 2.2863 1.2606 4.9856 20 1 1.5824 0.9615 5.7621 21 6 3.5403 0.3929 4.8616 22 1 4.2442 0.6921 4.0851 23 6 3.3948 -1.1035 5.1454 24 6 4.1179 -0.2016 6.1477 25 1 3.6047 0.0258 7.0821 26 6 5.6393 -0.3311 6.2450 27 1 -0.3634 0.5933 -0.8391 28 1 -0.3633 -1.0234 -0.0941 29 1 -0.3633 0.4301 0.9333 30 1 1.8932 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.7935 -0.0484 -2.9777 33 1 2.8981 3.7800 1.0309 34 1 1.2672 3.9360 0.3348 35 1 1.4932 4.0134 2.0987 36 1 3.4260 1.9784 2.4047 37 1 2.5123 0.4566 2.2715 38 1 3.4205 3.1236 4.4274 39 1 1.8230 3.4425 5.2922 40 1 2.4055 -1.4698 5.4200 41 1 4.0029 -1.7891 4.5553 42 1 6.0945 0.6551 6.1538 43 1 5.9060 -0.7668 7.2078 44 1 6.0013 -0.9739 5.4426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716599544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:09 Heat of formation + Delta-G solvation = 36.197390 kcal Electronic energy + Delta-G solvation = -19451.970582 eV Core-core repulsion = 16791.351826 eV Total energy + Delta-G solvation = -2660.618757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.87345 -37.09538 -35.35444 -32.57937 -31.11975 -28.51829 -26.87848 -26.76047 -23.89324 -23.23125 -21.89513 -21.05676 -20.42943 -19.32159 -18.58648 -16.30530 -15.38797 -15.31435 -14.77567 -14.13846 -13.72681 -13.46587 -13.40095 -13.05267 -12.75505 -12.48593 -12.24421 -12.01823 -11.55063 -11.43968 -11.38935 -11.17321 -11.05591 -10.98897 -10.88061 -10.71236 -10.55182 -10.33879 -10.03813 -9.94897 -9.59057 -9.51806 -9.15866 -9.08438 -8.87501 -8.33702 -7.08116 -5.96908 -4.10067 3.25337 3.34199 3.37070 3.71294 4.38227 4.40307 4.64414 4.94224 5.04210 5.13046 5.26918 5.33155 5.42061 5.52792 5.54203 5.71014 5.82568 5.89006 5.95120 5.97081 6.05297 6.13181 6.27612 6.34888 6.36290 6.38420 6.42614 6.51257 6.55151 6.57846 6.69522 6.75240 6.77658 6.94296 7.19003 7.22894 7.43214 7.64151 7.80148 8.04724 8.19335 8.38756 8.53955 9.01108 9.57449 11.02213 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.007241 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.575838 B = 3865.951644 C = 4635.996186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.212 3.788 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.538 5.538 14 C 0.038 3.962 15 C 0.100 3.900 16 C -0.125 4.125 17 H 0.105 0.895 18 C -0.181 4.181 19 C -0.125 4.125 20 H 0.096 0.904 21 C -0.111 4.111 22 H 0.107 0.893 23 C -0.171 4.171 24 C -0.158 4.158 25 H 0.099 0.901 26 C -0.122 4.122 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.022 0.978 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 0.288 13.166 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.148 4.148 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.261 5.261 14 C -0.111 4.111 15 C -0.028 4.028 16 C -0.143 4.143 17 H 0.123 0.877 18 C -0.218 4.218 19 C -0.144 4.144 20 H 0.114 0.886 21 C -0.129 4.129 22 H 0.125 0.875 23 C -0.208 4.208 24 C -0.177 4.177 25 H 0.117 0.883 26 C -0.179 4.179 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.360 0.105 13.051 13.122 hybrid contribution 1.929 0.173 -0.336 1.965 sum 0.568 0.279 12.715 12.730 Atomic orbital electron populations 1.21683 0.98915 0.98295 1.00417 1.21583 0.92236 0.99219 1.01760 1.19321 0.93132 0.91311 0.85634 0.94580 1.21809 0.92940 1.38016 1.05161 0.92621 1.24909 0.97625 0.95138 0.95777 1.69884 1.34533 1.38650 1.09313 0.86668 0.86429 0.77714 0.77971 1.19994 1.20989 1.21046 1.62365 1.55202 1.02979 1.05576 1.22134 0.99185 0.90176 0.99636 1.21429 0.93408 1.00335 0.87674 1.22586 0.99481 1.01642 0.90621 0.87719 1.23062 1.02090 0.92333 1.04279 1.21747 0.97906 0.94261 1.00447 0.88590 1.21805 0.98138 0.94175 0.98750 0.87513 1.23067 1.01696 0.93402 1.02663 1.22343 0.95492 1.05510 0.94314 0.88323 1.21346 0.93345 1.01651 1.01536 0.94292 0.95685 0.93576 0.89077 0.94904 0.92992 0.95893 0.93006 0.93663 0.95083 0.90420 0.89241 0.89588 0.89033 0.88845 0.92395 0.92576 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.75 37.16 0.36 -2.44 16 2 C -0.11 -2.61 5.24 -26.73 -0.14 -2.75 16 3 C 0.21 5.23 1.67 -68.86 -0.12 5.11 16 4 H 0.04 0.99 7.94 -51.93 -0.41 0.58 16 5 C -0.54 -14.39 7.30 -34.44 -0.25 -14.64 16 6 H 0.06 1.50 6.09 -52.49 -0.32 1.18 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.88 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.54 -11.36 4.20 -236.27 -0.99 -12.35 16 14 C 0.04 0.74 9.18 60.07 0.55 1.29 16 15 C 0.10 1.95 2.97 -3.82 -0.01 1.94 16 16 C -0.12 -1.99 5.31 -90.62 -0.48 -2.47 16 17 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 18 C -0.18 -2.53 9.90 -26.73 -0.26 -2.79 16 19 C -0.12 -1.74 5.85 -90.62 -0.53 -2.27 16 20 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 21 C -0.11 -1.56 4.82 -90.62 -0.44 -1.99 16 22 H 0.11 1.70 7.35 -51.93 -0.38 1.32 16 23 C -0.17 -2.21 9.90 -26.73 -0.26 -2.47 16 24 C -0.16 -1.90 6.13 -90.62 -0.56 -2.45 16 25 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 26 C -0.12 -1.32 10.19 37.16 0.38 -0.95 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.09 2.43 5.94 -51.93 -0.31 2.12 16 31 H 0.03 0.77 6.27 -51.93 -0.33 0.44 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.02 0.47 7.46 -51.93 -0.39 0.09 16 34 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 35 H 0.04 0.77 7.64 -51.93 -0.40 0.38 16 36 H 0.03 0.65 6.18 -51.93 -0.32 0.33 16 37 H 0.08 1.65 5.93 -51.93 -0.31 1.34 16 38 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -26.90 342.14 -10.26 -37.15 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -8.17 Total: 3.33 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.85 Total: -25.14 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.37 Total: -36.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.90 -10.26 -37.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.352 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds