Wall clock time and date at job start Mon Mar 30 2020 07:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47232 * 2 1 4 4 H 1.08998 * 109.47038 * 305.73661 * 3 2 1 5 5 C 1.50697 * 109.47218 * 185.73248 * 3 2 1 6 6 H 1.07993 * 120.00503 * 240.00096 * 5 3 2 7 7 C 1.37880 * 119.99608 * 60.00356 * 5 3 2 8 8 N 1.31512 * 120.00525 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99573 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47597 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46922 * 120.00202 * 9 7 5 12 12 H 1.48504 * 109.47042 * 239.99449 * 9 7 5 13 13 N 1.46906 * 109.46797 * 65.73278 * 3 2 1 14 14 C 1.46903 * 110.99723 * 193.77847 * 13 3 2 15 15 C 1.46903 * 110.99518 * 69.82530 * 13 3 2 16 16 C 1.53003 * 109.46632 * 199.57856 * 15 13 3 17 17 H 1.09004 * 115.55059 * 29.42188 * 16 15 13 18 18 C 1.53002 * 117.50148 * 243.74823 * 16 15 13 19 19 C 1.53004 * 117.51491 * 175.11819 * 16 15 13 20 20 H 1.08996 * 117.49547 * 214.97028 * 19 16 15 21 21 C 1.52992 * 117.49809 * 359.97438 * 19 16 15 22 22 H 1.08995 * 115.55336 * 34.32864 * 21 19 16 23 23 C 1.52998 * 117.49955 * 248.61766 * 21 19 16 24 24 C 1.53002 * 60.00258 * 252.51380 * 23 21 19 25 25 H 1.08997 * 117.51813 * 107.48219 * 24 23 21 26 26 C 1.52998 * 117.49846 * 252.50999 * 24 23 21 27 27 H 1.08999 * 109.47472 * 54.73841 * 1 2 3 28 28 H 1.09000 * 109.47133 * 174.74771 * 1 2 3 29 29 H 1.09001 * 109.46939 * 294.74123 * 1 2 3 30 30 H 1.09000 * 109.46860 * 240.00607 * 2 1 3 31 31 H 1.09003 * 109.47596 * 120.00281 * 2 1 3 32 32 H 0.96998 * 120.00201 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46719 * 296.04597 * 14 13 3 34 34 H 1.08999 * 109.47039 * 56.04808 * 14 13 3 35 35 H 1.08999 * 109.46553 * 176.04849 * 14 13 3 36 36 H 1.08996 * 109.46801 * 79.58492 * 15 13 3 37 37 H 1.09001 * 109.47559 * 319.58060 * 15 13 3 38 38 H 1.08996 * 117.49371 * 359.97438 * 18 16 15 39 39 H 1.08998 * 117.49962 * 144.99776 * 18 16 15 40 40 H 1.09008 * 117.49541 * 0.02562 * 23 21 19 41 41 H 1.08998 * 117.50094 * 145.02313 * 23 21 19 42 42 H 1.09004 * 109.47317 * 128.61796 * 26 24 23 43 43 H 1.08997 * 109.47392 * 248.62581 * 26 24 23 44 44 H 1.09003 * 109.47227 * 8.62275 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5952 1.9852 -0.8342 5 6 3.5403 1.4449 -0.1419 6 1 4.1549 1.8861 0.6287 7 6 4.1282 0.8838 -1.2557 8 7 3.3798 0.3460 -2.1940 9 14 5.9879 0.8873 -1.4320 10 1 6.5960 1.5483 -0.2494 11 1 6.4789 -0.5110 -1.5251 12 1 6.3671 1.6280 -2.6620 13 7 1.6665 2.0939 1.2627 14 6 1.8426 3.5498 1.1762 15 6 2.4294 1.5372 2.3879 16 6 1.7087 1.8552 3.6995 17 1 0.6248 1.9471 3.6301 18 6 2.4314 2.7572 4.7021 19 6 2.2863 1.2606 4.9856 20 1 1.5824 0.9615 5.7621 21 6 3.5403 0.3929 4.8616 22 1 4.2442 0.6921 4.0851 23 6 3.3948 -1.1035 5.1454 24 6 4.1179 -0.2016 6.1477 25 1 3.6047 0.0258 7.0821 26 6 5.6393 -0.3311 6.2450 27 1 -0.3634 0.5933 -0.8391 28 1 -0.3633 -1.0234 -0.0941 29 1 -0.3633 0.4301 0.9333 30 1 1.8932 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.7935 -0.0484 -2.9777 33 1 2.8981 3.7800 1.0309 34 1 1.2672 3.9360 0.3348 35 1 1.4932 4.0134 2.0987 36 1 3.4260 1.9784 2.4047 37 1 2.5123 0.4566 2.2715 38 1 3.4205 3.1236 4.4274 39 1 1.8230 3.4425 5.2922 40 1 2.4055 -1.4698 5.4200 41 1 4.0029 -1.7891 4.5553 42 1 6.0945 0.6551 6.1538 43 1 5.9060 -0.7668 7.2078 44 1 6.0013 -0.9739 5.4426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716599544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:09 Heat of formation + Delta-G solvation = 23.816840 kcal Electronic energy + Delta-G solvation = -19452.507443 eV Core-core repulsion = 16791.351826 eV Total energy + Delta-G solvation = -2661.155617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12513 -38.64492 -36.64077 -34.52061 -32.99442 -29.46661 -28.74072 -28.38883 -25.76517 -24.34790 -23.60885 -22.27388 -21.44258 -21.04390 -20.04847 -18.24874 -17.03955 -16.68013 -16.23361 -15.81487 -15.15946 -15.10077 -14.72309 -14.51295 -13.98155 -13.96695 -13.78072 -13.33540 -13.18621 -13.00055 -12.93326 -12.80272 -12.58744 -12.48837 -12.33826 -12.16699 -12.05535 -11.78926 -11.71055 -11.53514 -11.42381 -11.00334 -10.97002 -10.46731 -10.41153 -10.03969 -8.92019 -8.03863 -6.26285 1.32475 1.35653 1.44806 2.37825 2.62869 3.14011 3.26934 3.44891 3.59487 3.96643 4.03916 4.21156 4.36695 4.40166 4.43686 4.51045 4.54730 4.60407 4.70546 4.76599 4.86022 4.91107 4.93040 4.94675 4.96705 4.99236 5.02773 5.13076 5.14963 5.18421 5.28377 5.29651 5.41175 5.43128 5.48668 5.50548 5.54386 5.63262 5.80435 6.08980 6.20941 6.41381 6.71771 6.96215 7.44519 8.91142 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.007241 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.575838 B = 3865.951644 C = 4635.996186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.535 5.535 14 C 0.042 3.958 15 C 0.114 3.886 16 C -0.141 4.141 17 H 0.109 0.891 18 C -0.167 4.167 19 C -0.108 4.108 20 H 0.119 0.881 21 C -0.134 4.134 22 H 0.078 0.922 23 C -0.175 4.175 24 C -0.138 4.138 25 H 0.117 0.883 26 C -0.124 4.124 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.004 0.996 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.009 0.991 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 0.415 15.453 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.258 5.258 14 C -0.107 4.107 15 C -0.014 4.014 16 C -0.160 4.160 17 H 0.127 0.873 18 C -0.204 4.204 19 C -0.127 4.127 20 H 0.137 0.863 21 C -0.152 4.152 22 H 0.097 0.903 23 C -0.212 4.212 24 C -0.156 4.156 25 H 0.135 0.865 26 C -0.181 4.181 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.618 0.237 15.349 15.435 hybrid contribution 2.028 0.142 -1.041 2.284 sum 0.410 0.379 14.308 14.318 Atomic orbital electron populations 1.21542 0.96266 0.99584 1.00687 1.21414 0.94553 0.98190 1.00046 1.19107 0.91825 0.91695 0.86310 0.97901 1.22011 0.94161 1.37685 1.04903 0.93568 1.25584 1.01522 0.95021 0.95650 1.70001 1.36018 1.39234 1.09682 0.85759 0.81781 0.77791 0.77836 1.19892 1.20478 1.20597 1.62363 1.55117 1.03740 1.04531 1.22150 0.98102 0.89293 1.01175 1.21241 0.92702 0.98486 0.88951 1.22350 0.99315 1.04786 0.89556 0.87313 1.23099 1.01498 0.92914 1.02914 1.21815 0.97636 0.94179 0.99060 0.86345 1.21750 0.98397 0.95209 0.99884 0.90346 1.23124 1.02427 0.92539 1.03107 1.22443 0.96101 1.03181 0.93870 0.86504 1.21393 0.92680 1.01661 1.02402 0.94862 0.93705 0.92507 0.92048 0.95220 0.92920 0.97750 0.93091 0.90651 0.97314 0.92769 0.90276 0.87073 0.87974 0.89578 0.92448 0.90492 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.75 71.98 0.70 -4.34 16 2 C -0.10 -5.04 5.24 30.60 0.16 -4.88 16 3 C 0.22 11.05 1.67 44.17 0.07 11.13 16 4 H 0.00 0.17 7.94 -2.39 -0.02 0.15 16 5 C -0.55 -30.13 7.30 25.60 0.19 -29.95 16 6 H 0.05 2.58 6.09 -2.91 -0.02 2.56 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.44 11.29 21.45 0.24 -52.19 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.20 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 N -0.53 -22.81 4.20 -901.43 -3.78 -26.59 16 14 C 0.04 1.63 9.18 127.69 1.17 2.80 16 15 C 0.11 4.52 2.97 86.30 0.26 4.78 16 16 C -0.14 -4.32 5.31 -10.79 -0.06 -4.38 16 17 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 18 C -0.17 -4.30 9.90 30.60 0.30 -3.99 16 19 C -0.11 -2.78 5.85 -10.79 -0.06 -2.84 16 20 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 21 C -0.13 -3.65 4.82 -10.79 -0.05 -3.70 16 22 H 0.08 2.58 7.35 -2.39 -0.02 2.56 16 23 C -0.18 -4.29 9.90 30.59 0.30 -3.99 16 24 C -0.14 -2.99 6.13 -10.79 -0.07 -3.06 16 25 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 26 C -0.12 -2.48 10.19 71.98 0.73 -1.75 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.18 7.92 -2.39 -0.02 2.16 16 30 H 0.06 3.37 5.94 -2.39 -0.01 3.35 16 31 H 0.03 1.42 6.27 -2.39 -0.01 1.41 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.00 0.17 7.46 -2.39 -0.02 0.15 16 34 H 0.05 1.97 8.02 -2.39 -0.02 1.95 16 35 H 0.07 2.47 7.64 -2.39 -0.02 2.46 16 36 H 0.01 0.38 6.18 -2.39 -0.01 0.36 16 37 H 0.05 2.37 5.93 -2.39 -0.01 2.36 16 38 H 0.08 2.21 8.03 -2.39 -0.02 2.19 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 41 H 0.09 2.21 8.05 -2.39 -0.02 2.19 16 42 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.03 7.90 -2.39 -0.02 1.01 16 Total: -1.00 -58.67 342.14 3.52 -55.16 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.93 Total: 19.94 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 4.10 Total: -42.50 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -3.54 Total: -78.79 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -58.67 3.52 -55.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.972 kcal (2) G-P(sol) polarization free energy of solvation -58.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds