Wall clock time and date at job start Mon Mar 30 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.09004 * 109.46428 * 52.67768 * 3 2 1 5 5 C 1.50695 * 109.47288 * 292.67569 * 3 2 1 6 6 H 1.08000 * 120.00147 * 245.98014 * 5 3 2 7 7 C 1.37881 * 119.99921 * 66.25190 * 5 3 2 8 8 N 1.31517 * 119.99795 * 23.44227 * 7 5 3 9 9 Si 1.86800 * 120.00099 * 203.43650 * 7 5 3 10 10 H 1.48496 * 109.46823 * 90.00391 * 9 7 5 11 11 H 1.48500 * 109.46890 * 210.00171 * 9 7 5 12 12 H 1.48498 * 109.46840 * 330.00202 * 9 7 5 13 13 N 1.46901 * 109.46948 * 172.67345 * 3 2 1 14 14 C 1.46899 * 111.00092 * 55.06086 * 13 3 2 15 15 C 1.46899 * 111.00170 * 291.10497 * 13 3 2 16 16 C 1.53006 * 109.47029 * 195.81888 * 15 13 3 17 17 H 1.09000 * 115.54897 * 29.42233 * 16 15 13 18 18 C 1.53003 * 117.49910 * 243.74793 * 16 15 13 19 19 C 1.53005 * 117.49715 * 175.08685 * 16 15 13 20 20 H 1.08996 * 117.49656 * 214.97786 * 19 16 15 21 21 C 1.53002 * 117.49951 * 0.02562 * 19 16 15 22 22 H 1.09003 * 115.54941 * 34.32741 * 21 19 16 23 23 C 1.52994 * 117.49729 * 248.62124 * 21 19 16 24 24 C 1.52992 * 117.49844 * 179.97438 * 21 19 16 25 25 H 1.09002 * 117.50203 * 214.98041 * 24 21 19 26 26 C 1.53005 * 117.49905 * 359.97172 * 24 21 19 27 27 H 1.08997 * 109.47123 * 186.49907 * 1 2 3 28 28 H 1.08995 * 109.47213 * 306.50136 * 1 2 3 29 29 H 1.09003 * 109.47114 * 66.50333 * 1 2 3 30 30 H 1.09002 * 109.47662 * 240.00268 * 2 1 3 31 31 H 1.08997 * 109.47374 * 120.00416 * 2 1 3 32 32 H 0.97001 * 119.99737 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46703 * 59.99904 * 14 13 3 34 34 H 1.09000 * 109.47274 * 179.97438 * 14 13 3 35 35 H 1.08990 * 109.47207 * 300.00027 * 14 13 3 36 36 H 1.09004 * 109.47266 * 315.82001 * 15 13 3 37 37 H 1.08997 * 109.47217 * 75.82322 * 15 13 3 38 38 H 1.09000 * 117.49399 * 0.02562 * 18 16 15 39 39 H 1.08994 * 117.49415 * 144.99825 * 18 16 15 40 40 H 1.09003 * 117.49922 * 359.97438 * 23 21 19 41 41 H 1.09004 * 117.49993 * 145.02073 * 23 21 19 42 42 H 1.09004 * 109.46778 * 60.00332 * 26 24 21 43 43 H 1.08999 * 109.46860 * 179.97438 * 26 24 21 44 44 H 1.08998 * 109.47652 * 300.00504 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5736 1.9927 0.8173 5 6 1.6911 2.0987 -1.3109 6 1 2.4750 2.3932 -1.9930 7 6 0.3712 2.3283 -1.6372 8 7 -0.5344 2.4198 -0.6880 9 14 -0.1305 2.5095 -3.4274 10 1 -0.4843 1.1772 -3.9795 11 1 -1.3051 3.4129 -3.5232 12 1 0.9992 3.0824 -4.2025 13 7 3.4984 1.4462 0.1766 14 6 4.1541 0.6150 -0.8417 15 6 3.8659 1.0086 1.5299 16 6 5.3200 1.3916 1.8124 17 1 5.6809 2.2808 1.2954 18 6 6.3178 0.2551 2.0439 19 6 5.8607 1.1238 3.2185 20 1 6.5776 1.8364 3.6262 21 6 4.9061 0.4928 4.2341 22 1 4.1897 -0.2203 3.8260 23 6 4.4487 1.3611 5.4079 24 6 5.4469 0.2244 5.6399 25 1 5.0859 -0.6648 6.1568 26 6 6.9012 0.6069 5.9223 27 1 -0.3633 -1.0210 0.1163 28 1 -0.3633 0.6113 0.8260 29 1 -0.3633 0.4097 -0.9425 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 -1.4629 2.5816 -0.9175 33 1 3.9211 1.0038 -1.8330 34 1 5.2330 0.6358 -0.6881 35 1 3.7948 -0.4107 -0.7600 36 1 3.2146 1.4925 2.2577 37 1 3.7540 -0.0731 1.6049 38 1 5.9384 -0.7656 1.9944 39 1 7.3351 0.3965 1.6790 40 1 4.8283 2.3817 5.4568 41 1 3.4312 1.2195 5.7722 42 1 7.0330 1.6771 5.7625 43 1 7.1474 0.3611 6.9553 44 1 7.5590 0.0555 5.2505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716599546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:12 Heat of formation + Delta-G solvation = 52.654418 kcal Electronic energy + Delta-G solvation = -19231.695933 eV Core-core repulsion = 16571.790806 eV Total energy + Delta-G solvation = -2659.905126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.07643 -37.31013 -35.49024 -33.02819 -30.41554 -28.55153 -27.37374 -26.51199 -24.06550 -23.41387 -21.97655 -21.52764 -20.44723 -19.23195 -18.12652 -16.21974 -16.08547 -15.09556 -14.84937 -14.17335 -13.88987 -13.69742 -13.23410 -13.16017 -13.01211 -12.58342 -12.44842 -12.27521 -11.71775 -11.47899 -11.31274 -11.19983 -10.97625 -10.89233 -10.72174 -10.64471 -10.53500 -10.25850 -10.13499 -10.05598 -9.77837 -9.56220 -9.34884 -9.14658 -9.02673 -7.84049 -7.05884 -6.06098 -3.90711 3.32561 3.40774 3.43922 3.59688 4.27388 4.44874 4.59856 4.77793 4.91981 4.98582 5.22890 5.23763 5.34281 5.39331 5.43026 5.58127 5.75436 5.77664 5.83999 5.87565 5.97030 5.99962 6.15169 6.24192 6.26865 6.29241 6.32199 6.41976 6.43870 6.49940 6.53048 6.69754 6.76556 6.83991 7.06723 7.30290 7.37929 7.63421 7.86419 7.98861 8.15493 8.35891 8.68121 9.07268 9.62704 11.01811 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034955 B = 0.004799 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.848747 B = 5833.465748 C = 6168.185741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C 0.210 3.790 4 H 0.048 0.952 5 C -0.509 4.509 6 H 0.063 0.937 7 C 0.071 3.929 8 N -0.870 5.870 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.532 5.532 14 C 0.036 3.964 15 C 0.088 3.912 16 C -0.124 4.124 17 H 0.109 0.891 18 C -0.179 4.179 19 C -0.122 4.122 20 H 0.100 0.900 21 C -0.113 4.113 22 H 0.103 0.897 23 C -0.172 4.172 24 C -0.158 4.158 25 H 0.099 0.901 26 C -0.118 4.118 27 H -0.002 1.002 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.014 0.986 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.933 -4.597 9.415 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.175 4.175 3 C 0.104 3.896 4 H 0.066 0.934 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.131 4.131 8 N -0.508 5.508 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.254 5.254 14 C -0.112 4.112 15 C -0.040 4.040 16 C -0.143 4.143 17 H 0.127 0.873 18 C -0.216 4.216 19 C -0.141 4.141 20 H 0.118 0.882 21 C -0.131 4.131 22 H 0.121 0.879 23 C -0.209 4.209 24 C -0.176 4.176 25 H 0.117 0.883 26 C -0.175 4.175 27 H 0.017 0.983 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.904 -4.057 9.385 14.947 hybrid contribution -0.724 -0.883 -0.860 1.429 sum 10.180 -4.939 8.525 14.167 Atomic orbital electron populations 1.21899 0.95322 0.95916 1.04894 1.22257 0.97345 1.00580 0.97306 1.19473 0.80629 0.90983 0.98524 0.93377 1.20971 0.91679 1.39738 1.02290 0.91864 1.24775 0.96800 0.94882 0.96680 1.70243 1.02354 1.46735 1.31461 0.86880 0.78160 0.77882 0.86878 1.20687 1.21503 1.19845 1.62260 1.11733 1.51228 1.00204 1.22214 0.96907 0.94725 0.97389 1.21567 0.92854 0.96725 0.92879 1.22481 0.95343 0.99556 0.96873 0.87270 1.23076 0.99526 0.96428 1.02578 1.21758 1.00951 1.02279 0.89105 0.88219 1.21773 1.00646 1.02104 0.88548 0.87881 1.23081 0.99211 0.95967 1.02632 1.22350 0.95350 1.00148 0.99771 0.88285 1.21306 0.94128 1.01167 1.00908 0.98312 0.92600 0.90370 0.94025 0.96539 0.93028 0.91250 0.93799 0.96775 0.91213 0.95901 0.89297 0.89378 0.88797 0.88930 0.92634 0.92744 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.25 37.16 0.31 -2.62 16 2 C -0.14 -3.15 4.52 -26.73 -0.12 -3.27 16 3 C 0.21 5.21 1.92 -68.86 -0.13 5.08 16 4 H 0.05 1.34 7.70 -51.93 -0.40 0.94 16 5 C -0.51 -13.75 7.90 -34.44 -0.27 -14.02 16 6 H 0.06 1.74 6.91 -52.49 -0.36 1.38 16 7 C 0.07 1.91 3.54 -17.82 -0.06 1.85 16 8 N -0.87 -24.01 10.08 55.43 0.56 -23.45 16 9 Si 0.87 20.88 29.60 -169.99 -5.03 15.85 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -11.42 4.67 -236.29 -1.10 -12.53 16 14 C 0.04 0.71 8.67 60.06 0.52 1.23 16 15 C 0.09 1.61 3.46 -3.82 -0.01 1.60 16 16 C -0.12 -1.89 5.05 -90.61 -0.46 -2.35 16 17 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 18 C -0.18 -2.32 9.90 -26.69 -0.26 -2.58 16 19 C -0.12 -1.57 5.18 -90.57 -0.47 -2.04 16 20 H 0.10 1.19 7.19 -51.93 -0.37 0.82 16 21 C -0.11 -1.41 5.10 -90.63 -0.46 -1.87 16 22 H 0.10 1.40 7.34 -51.93 -0.38 1.02 16 23 C -0.17 -1.99 9.90 -26.71 -0.26 -2.25 16 24 C -0.16 -1.68 6.41 -90.60 -0.58 -2.26 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 C -0.12 -1.09 9.05 37.16 0.34 -0.76 16 27 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 29 H 0.08 2.03 5.00 -51.93 -0.26 1.77 16 30 H 0.04 0.97 6.77 -51.93 -0.35 0.62 16 31 H 0.02 0.35 6.72 -51.93 -0.35 0.00 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.07 1.45 6.67 -51.93 -0.35 1.10 16 34 H 0.04 0.76 7.40 -51.93 -0.38 0.37 16 35 H 0.01 0.27 6.39 -51.93 -0.33 -0.06 16 36 H 0.07 1.35 7.71 -51.93 -0.40 0.95 16 37 H 0.02 0.42 6.57 -51.93 -0.34 0.08 16 38 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.51 7.40 -51.93 -0.38 0.13 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -26.92 333.18 -10.48 -37.40 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.99 Total: 1.98 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.94 Total: -24.28 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.54 Total: -35.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.92 -10.48 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.056 kcal (2) G-P(sol) polarization free energy of solvation -26.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds