Wall clock time and date at job start Mon Mar 30 2020 07:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.09004 * 109.46428 * 52.67768 * 3 2 1 5 5 C 1.50695 * 109.47288 * 292.67569 * 3 2 1 6 6 H 1.08000 * 120.00147 * 245.98014 * 5 3 2 7 7 C 1.37881 * 119.99921 * 66.25190 * 5 3 2 8 8 N 1.31517 * 119.99795 * 23.44227 * 7 5 3 9 9 Si 1.86800 * 120.00099 * 203.43650 * 7 5 3 10 10 H 1.48496 * 109.46823 * 90.00391 * 9 7 5 11 11 H 1.48500 * 109.46890 * 210.00171 * 9 7 5 12 12 H 1.48498 * 109.46840 * 330.00202 * 9 7 5 13 13 N 1.46901 * 109.46948 * 172.67345 * 3 2 1 14 14 C 1.46899 * 111.00092 * 55.06086 * 13 3 2 15 15 C 1.46899 * 111.00170 * 291.10497 * 13 3 2 16 16 C 1.53006 * 109.47029 * 195.81888 * 15 13 3 17 17 H 1.09000 * 115.54897 * 29.42233 * 16 15 13 18 18 C 1.53003 * 117.49910 * 243.74793 * 16 15 13 19 19 C 1.53005 * 117.49715 * 175.08685 * 16 15 13 20 20 H 1.08996 * 117.49656 * 214.97786 * 19 16 15 21 21 C 1.53002 * 117.49951 * 0.02562 * 19 16 15 22 22 H 1.09003 * 115.54941 * 34.32741 * 21 19 16 23 23 C 1.52994 * 117.49729 * 248.62124 * 21 19 16 24 24 C 1.52992 * 117.49844 * 179.97438 * 21 19 16 25 25 H 1.09002 * 117.50203 * 214.98041 * 24 21 19 26 26 C 1.53005 * 117.49905 * 359.97172 * 24 21 19 27 27 H 1.08997 * 109.47123 * 186.49907 * 1 2 3 28 28 H 1.08995 * 109.47213 * 306.50136 * 1 2 3 29 29 H 1.09003 * 109.47114 * 66.50333 * 1 2 3 30 30 H 1.09002 * 109.47662 * 240.00268 * 2 1 3 31 31 H 1.08997 * 109.47374 * 120.00416 * 2 1 3 32 32 H 0.97001 * 119.99737 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.46703 * 59.99904 * 14 13 3 34 34 H 1.09000 * 109.47274 * 179.97438 * 14 13 3 35 35 H 1.08990 * 109.47207 * 300.00027 * 14 13 3 36 36 H 1.09004 * 109.47266 * 315.82001 * 15 13 3 37 37 H 1.08997 * 109.47217 * 75.82322 * 15 13 3 38 38 H 1.09000 * 117.49399 * 0.02562 * 18 16 15 39 39 H 1.08994 * 117.49415 * 144.99825 * 18 16 15 40 40 H 1.09003 * 117.49922 * 359.97438 * 23 21 19 41 41 H 1.09004 * 117.49993 * 145.02073 * 23 21 19 42 42 H 1.09004 * 109.46778 * 60.00332 * 26 24 21 43 43 H 1.08999 * 109.46860 * 179.97438 * 26 24 21 44 44 H 1.08998 * 109.47652 * 300.00504 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5736 1.9927 0.8173 5 6 1.6911 2.0987 -1.3109 6 1 2.4750 2.3932 -1.9930 7 6 0.3712 2.3283 -1.6372 8 7 -0.5344 2.4198 -0.6880 9 14 -0.1305 2.5095 -3.4274 10 1 -0.4843 1.1772 -3.9795 11 1 -1.3051 3.4129 -3.5232 12 1 0.9992 3.0824 -4.2025 13 7 3.4984 1.4462 0.1766 14 6 4.1541 0.6150 -0.8417 15 6 3.8659 1.0086 1.5299 16 6 5.3200 1.3916 1.8124 17 1 5.6809 2.2808 1.2954 18 6 6.3178 0.2551 2.0439 19 6 5.8607 1.1238 3.2185 20 1 6.5776 1.8364 3.6262 21 6 4.9061 0.4928 4.2341 22 1 4.1897 -0.2203 3.8260 23 6 4.4487 1.3611 5.4079 24 6 5.4469 0.2244 5.6399 25 1 5.0859 -0.6648 6.1568 26 6 6.9012 0.6069 5.9223 27 1 -0.3633 -1.0210 0.1163 28 1 -0.3633 0.6113 0.8260 29 1 -0.3633 0.4097 -0.9425 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 -1.4629 2.5816 -0.9175 33 1 3.9211 1.0038 -1.8330 34 1 5.2330 0.6358 -0.6881 35 1 3.7948 -0.4107 -0.7600 36 1 3.2146 1.4925 2.2577 37 1 3.7540 -0.0731 1.6049 38 1 5.9384 -0.7656 1.9944 39 1 7.3351 0.3965 1.6790 40 1 4.8283 2.3817 5.4568 41 1 3.4312 1.2195 5.7722 42 1 7.0330 1.6771 5.7625 43 1 7.1474 0.3611 6.9553 44 1 7.5590 0.0555 5.2505 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716599546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:11 Heat of formation + Delta-G solvation = 39.846803 kcal Electronic energy + Delta-G solvation = -19232.251312 eV Core-core repulsion = 16571.790806 eV Total energy + Delta-G solvation = -2660.460506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23298 -38.84751 -36.72179 -34.87598 -32.36157 -29.32349 -29.12494 -28.22039 -25.83115 -24.48764 -23.78793 -22.53997 -21.62778 -20.90524 -19.30254 -18.18864 -17.28116 -16.66757 -16.23149 -15.77510 -15.51811 -15.36712 -14.71101 -14.42007 -14.20475 -13.93988 -13.70856 -13.48931 -13.25940 -12.97827 -12.81526 -12.59835 -12.41986 -12.35502 -12.29440 -12.15336 -12.08274 -11.86664 -11.80610 -11.71574 -11.37542 -11.11267 -11.02799 -10.46835 -10.11179 -9.91252 -8.77131 -8.13353 -6.04163 1.41678 1.45545 1.53245 2.45759 2.60906 3.13344 3.25643 3.41228 3.62081 3.90714 3.99563 4.16269 4.33861 4.38793 4.41038 4.41701 4.50926 4.52951 4.62075 4.69196 4.78517 4.80076 4.90139 4.93671 4.96610 4.97884 5.03198 5.04539 5.12185 5.20825 5.24318 5.27902 5.35541 5.41582 5.42596 5.43488 5.50006 5.72874 5.82307 5.95219 6.22363 6.55276 6.83263 6.98497 7.52543 8.94040 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034955 B = 0.004799 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.848747 B = 5833.465748 C = 6168.185741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.008 0.992 5 C -0.528 4.528 6 H 0.053 0.947 7 C 0.035 3.965 8 N -0.892 5.892 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.546 5.546 14 C 0.044 3.956 15 C 0.099 3.901 16 C -0.146 4.146 17 H 0.100 0.900 18 C -0.162 4.162 19 C -0.105 4.105 20 H 0.114 0.886 21 C -0.132 4.132 22 H 0.087 0.913 23 C -0.179 4.179 24 C -0.140 4.140 25 H 0.107 0.893 26 C -0.118 4.118 27 H 0.023 0.977 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.015 0.985 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.500 -5.537 9.716 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.026 0.974 5 C -0.566 4.566 6 H 0.071 0.929 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.269 5.269 14 C -0.105 4.105 15 C -0.029 4.029 16 C -0.165 4.165 17 H 0.118 0.882 18 C -0.199 4.199 19 C -0.124 4.124 20 H 0.132 0.868 21 C -0.151 4.151 22 H 0.105 0.895 23 C -0.216 4.216 24 C -0.158 4.158 25 H 0.125 0.875 26 C -0.175 4.175 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.484 -5.002 9.689 16.576 hybrid contribution -1.213 -0.571 -0.895 1.612 sum 11.271 -5.574 8.794 15.344 Atomic orbital electron populations 1.21739 0.95708 0.96799 1.02944 1.22110 0.96885 0.99736 0.97862 1.19193 0.82641 0.91123 0.96009 0.97420 1.21171 0.91772 1.40492 1.03145 0.92922 1.25374 0.96725 0.94578 0.99912 1.70337 1.02521 1.47172 1.32993 0.85975 0.77672 0.77955 0.82565 1.20051 1.21275 1.19694 1.62166 1.09883 1.52603 1.02252 1.22156 0.98232 0.94139 0.95928 1.21450 0.94618 0.96265 0.90541 1.22252 0.93868 1.00706 0.99656 0.88167 1.23131 0.99550 0.95473 1.01719 1.21793 1.00375 1.02031 0.88152 0.86810 1.21754 1.01186 1.02683 0.89449 0.89454 1.23140 0.99719 0.96484 1.02270 1.22452 0.96048 0.99762 0.97566 0.87474 1.21341 0.92887 1.01298 1.01972 0.95854 0.94454 0.92388 0.93916 0.95168 0.92949 0.92915 0.91177 0.96616 0.93326 0.95903 0.89357 0.87358 0.88545 0.89112 0.92535 0.91278 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.47 8.25 71.98 0.59 -4.87 16 2 C -0.13 -5.90 4.52 30.59 0.14 -5.76 16 3 C 0.22 11.05 1.92 44.17 0.08 11.14 16 4 H 0.01 0.46 7.70 -2.39 -0.02 0.44 16 5 C -0.53 -29.06 7.90 25.60 0.20 -28.86 16 6 H 0.05 2.96 6.91 -2.91 -0.02 2.94 16 7 C 0.03 1.90 3.54 84.66 0.30 2.20 16 8 N -0.89 -50.13 10.08 21.45 0.22 -49.91 16 9 Si 0.93 43.10 29.60 68.60 2.03 45.13 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 N -0.55 -23.77 4.67 -901.47 -4.21 -27.97 16 14 C 0.04 1.69 8.67 127.69 1.11 2.80 16 15 C 0.10 3.66 3.46 86.31 0.30 3.96 16 16 C -0.15 -4.33 5.05 -10.79 -0.05 -4.39 16 17 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 18 C -0.16 -3.80 9.90 30.62 0.30 -3.49 16 19 C -0.11 -2.51 5.18 -10.76 -0.06 -2.56 16 20 H 0.11 2.43 7.19 -2.39 -0.02 2.41 16 21 C -0.13 -3.18 5.10 -10.80 -0.06 -3.23 16 22 H 0.09 2.36 7.34 -2.39 -0.02 2.34 16 23 C -0.18 -3.98 9.90 30.61 0.30 -3.68 16 24 C -0.14 -2.70 6.41 -10.78 -0.07 -2.77 16 25 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 26 C -0.12 -1.85 9.05 71.98 0.65 -1.20 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 1.89 7.52 -2.39 -0.02 1.87 16 29 H 0.06 3.02 5.00 -2.39 -0.01 3.01 16 30 H 0.04 1.97 6.77 -2.39 -0.02 1.95 16 31 H 0.03 1.30 6.72 -2.39 -0.02 1.28 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.05 2.19 6.67 -2.39 -0.02 2.18 16 34 H 0.07 2.31 7.40 -2.39 -0.02 2.30 16 35 H 0.02 0.59 6.39 -2.39 -0.02 0.57 16 36 H 0.05 1.96 7.71 -2.39 -0.02 1.94 16 37 H 0.02 0.83 6.57 -2.39 -0.02 0.82 16 38 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 2.08 8.05 -2.39 -0.02 2.06 16 41 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.06 0.88 7.40 -2.39 -0.02 0.86 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -57.79 333.18 2.73 -55.07 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.94 Total: 18.41 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.75 Total: -40.72 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -3.99 Total: -77.89 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -57.79 2.73 -55.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716599546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.916 kcal (2) G-P(sol) polarization free energy of solvation -57.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds