Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 H 1.09000 * 115.54898 * 330.66921 * 3 2 1 5 5 C 1.53008 * 117.51729 * 116.37196 * 3 2 1 6 6 C 1.53004 * 117.50054 * 185.00106 * 3 2 1 7 7 H 1.08994 * 117.50379 * 144.97682 * 6 3 2 8 8 C 1.53006 * 117.49442 * 359.97354 * 6 3 2 9 9 N 1.46903 * 109.46632 * 175.00295 * 8 6 3 10 10 C 1.46846 * 110.99717 * 190.00023 * 9 8 6 11 11 C 1.53036 * 109.52384 * 174.15896 * 10 9 8 12 12 C 1.53123 * 109.27788 * 59.18000 * 11 10 9 13 13 C 1.52995 * 109.52352 * 182.44354 * 12 11 10 14 14 C 1.50700 * 109.47236 * 185.00263 * 13 12 11 15 15 H 1.08007 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00266 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47358 * 60.00156 * 18 16 14 20 20 H 1.48500 * 109.47164 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47422 * 300.00270 * 18 16 14 22 22 C 1.53124 * 109.15980 * 302.34618 * 12 11 10 23 23 C 1.46842 * 111.00077 * 65.79321 * 9 8 6 24 24 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47204 * 299.99984 * 1 2 3 26 26 H 1.09001 * 109.47050 * 60.00218 * 1 2 3 27 27 H 1.09004 * 109.47654 * 240.00231 * 2 1 3 28 28 H 1.09000 * 109.47569 * 119.99693 * 2 1 3 29 29 H 1.08998 * 117.49729 * 359.97438 * 5 3 2 30 30 H 1.09002 * 117.49252 * 214.97063 * 5 3 2 31 31 H 1.08996 * 109.47126 * 55.00487 * 8 6 3 32 32 H 1.08994 * 109.47164 * 294.99960 * 8 6 3 33 33 H 1.08999 * 109.46089 * 54.14588 * 10 9 8 34 34 H 1.08998 * 109.46294 * 294.17617 * 10 9 8 35 35 H 1.09000 * 109.50632 * 179.12292 * 11 10 9 36 36 H 1.09006 * 109.50216 * 299.24086 * 11 10 9 37 37 H 1.09000 * 109.52181 * 62.25097 * 12 11 10 38 38 H 1.09007 * 109.47349 * 304.99721 * 13 12 11 39 39 H 1.08999 * 109.47500 * 64.99987 * 13 12 11 40 40 H 0.97004 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50272 * 297.71554 * 22 12 11 42 42 H 1.08997 * 109.53375 * 177.61494 * 22 12 11 43 43 H 1.09006 * 109.46447 * 305.84971 * 23 9 8 44 44 H 1.08994 * 109.46873 * 65.82005 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 -0.4817 5 6 2.8438 1.9081 1.2158 6 6 3.5501 1.6580 -0.1183 7 1 3.8920 2.5285 -0.6781 8 6 4.4347 0.4143 -0.2269 9 7 5.8279 0.8226 -0.4512 10 6 6.6660 -0.3330 -0.7955 11 6 8.0720 0.1463 -1.1632 12 6 8.6751 0.9020 0.0241 13 6 10.0568 1.4363 -0.3583 14 6 10.7005 2.0726 0.8466 15 1 10.1763 2.0942 1.7907 16 6 11.9586 2.6273 0.7438 17 7 12.5971 2.6006 -0.4056 18 14 12.7562 3.4167 2.2372 19 1 12.8969 2.4056 3.3157 20 1 14.0973 3.9351 1.8660 21 1 11.9082 4.5373 2.7170 22 6 7.7585 2.0717 0.3934 23 6 6.3615 1.5364 0.7159 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0092 1.1868 2.0160 30 1 2.7210 2.9434 1.5338 31 1 4.0972 -0.1998 -1.0618 32 1 4.3687 -0.1603 0.6969 33 1 6.2282 -0.8591 -1.6439 34 1 6.7239 -1.0071 0.0590 35 1 8.6982 -0.7129 -1.4037 36 1 8.0163 0.8097 -2.0264 37 1 8.7670 0.2283 0.8760 38 1 10.6795 0.6141 -0.7111 39 1 9.9531 2.1788 -1.1495 40 1 13.4821 2.9911 -0.4780 41 1 7.6978 2.7652 -0.4453 42 1 8.1603 2.5886 1.2648 43 1 5.7026 2.3682 0.9654 44 1 6.4209 0.8536 1.5634 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = -8.158405 kcal Electronic energy + Delta-G solvation = -18707.296447 eV Core-core repulsion = 16044.754279 eV Total energy + Delta-G solvation = -2662.542168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.23229 -37.72260 -34.30671 -32.45895 -31.84469 -30.29564 -28.42601 -25.76223 -24.15206 -23.31934 -22.54224 -21.39266 -20.64211 -19.26706 -18.84470 -16.30630 -16.13833 -15.13453 -14.82372 -14.49224 -14.47319 -14.17033 -13.74729 -13.43094 -12.97894 -12.78275 -12.44889 -12.35618 -12.04916 -11.77597 -11.69984 -11.57658 -11.32185 -11.06206 -11.00014 -10.77837 -10.59928 -10.56839 -10.23937 -9.95709 -9.87106 -9.78852 -9.46469 -8.99198 -8.83593 -8.28945 -8.02309 -5.93922 -3.95283 3.35940 3.40429 3.42713 3.64165 4.11825 4.49664 4.50255 4.72812 4.83662 4.98052 5.11444 5.27914 5.33965 5.40451 5.41585 5.44354 5.55335 5.59456 5.62070 5.71374 5.77011 5.82206 5.83277 5.89726 5.92994 5.97299 6.05421 6.16514 6.20238 6.24614 6.31443 6.51404 6.64502 6.73982 7.04132 7.16550 7.25464 7.43247 7.46949 7.74510 7.91958 8.07231 8.50477 9.11171 9.67880 11.17442 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.003786 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.377069 B = 7393.307859 C = 7836.703625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.150 4.150 4 H 0.102 0.898 5 C -0.180 4.180 6 C -0.137 4.137 7 H 0.112 0.888 8 C 0.088 3.912 9 N -0.535 5.535 10 C 0.060 3.940 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.100 4.100 23 C 0.058 3.942 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -4.719 0.494 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.169 4.169 4 H 0.120 0.880 5 C -0.217 4.217 6 C -0.156 4.156 7 H 0.130 0.870 8 C -0.040 4.040 9 N -0.260 5.260 10 C -0.068 4.068 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.138 4.138 23 C -0.070 4.070 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.805 -4.352 0.015 21.255 hybrid contribution 0.537 -0.032 1.531 1.623 sum -20.268 -4.384 1.546 20.794 Atomic orbital electron populations 1.21745 0.95678 1.01402 1.01776 1.21094 0.95692 0.94464 1.01934 1.22451 0.93822 0.97878 1.02749 0.87977 1.23183 1.04837 1.02048 0.91623 1.22384 0.92361 1.00565 1.00242 0.86982 1.21584 0.88380 0.94497 0.99552 1.61918 1.00878 1.25227 1.37959 1.22088 0.94680 0.91096 0.98943 1.21689 0.93281 1.00070 0.99905 1.21233 0.97356 0.95624 0.95787 1.19109 0.89311 0.95829 0.96605 1.21230 1.00909 1.36734 0.96380 0.92789 1.25016 0.97395 0.96396 0.95691 1.69956 1.13713 1.45834 1.24136 0.86717 0.78534 0.79742 0.83344 1.20369 1.21375 1.20286 1.21552 0.91758 0.98401 1.02067 1.22191 0.97465 0.97224 0.90102 0.92880 0.92751 0.92746 0.91608 0.92023 0.89123 0.89034 0.90902 0.95282 0.91755 0.95575 0.92207 0.91605 0.93156 0.96819 0.96523 0.93062 0.91939 0.91048 0.91374 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 37.16 0.37 -0.69 16 2 C -0.09 -0.79 5.30 -26.73 -0.14 -0.93 16 3 C -0.15 -1.40 5.74 -90.61 -0.52 -1.92 16 4 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 5 C -0.18 -1.80 9.82 -26.72 -0.26 -2.06 16 6 C -0.14 -1.53 4.70 -90.61 -0.43 -1.95 16 7 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 8 C 0.09 1.07 4.32 -3.82 -0.02 1.06 16 9 N -0.54 -8.01 4.66 -234.67 -1.09 -9.11 16 10 C 0.06 0.90 5.46 -3.83 -0.02 0.88 16 11 C -0.11 -1.99 5.38 -26.65 -0.14 -2.13 16 12 C -0.08 -1.70 2.20 -90.49 -0.20 -1.90 16 13 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 14 C -0.51 -14.53 8.45 -34.44 -0.29 -14.82 16 15 H 0.05 1.48 7.08 -52.48 -0.37 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 23 C 0.06 0.92 5.31 -3.83 -0.02 0.90 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.55 7.60 -51.93 -0.39 0.16 16 28 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 29 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 32 H 0.03 0.36 7.86 -51.93 -0.41 -0.05 16 33 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.46 7.06 -51.93 -0.37 1.10 16 43 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 340.58 15.07 5.13 5.13 Total: -1.00 -29.41 340.58 -10.86 -40.27 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.58 Total: -3.11 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.03 Total: -23.50 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.36 Total: -35.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.41 -10.86 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.116 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds