Wall clock time and date at job start Mon Mar 30 2020 07:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 H 1.09000 * 115.54898 * 330.66921 * 3 2 1 5 5 C 1.53008 * 117.51729 * 116.37196 * 3 2 1 6 6 C 1.53004 * 117.50054 * 185.00106 * 3 2 1 7 7 H 1.08994 * 117.50379 * 144.97682 * 6 3 2 8 8 C 1.53006 * 117.49442 * 359.97354 * 6 3 2 9 9 N 1.46903 * 109.46632 * 175.00295 * 8 6 3 10 10 C 1.46846 * 110.99717 * 190.00023 * 9 8 6 11 11 C 1.53036 * 109.52384 * 174.15896 * 10 9 8 12 12 C 1.53123 * 109.27788 * 59.18000 * 11 10 9 13 13 C 1.52995 * 109.52352 * 182.44354 * 12 11 10 14 14 C 1.50700 * 109.47236 * 185.00263 * 13 12 11 15 15 H 1.08007 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00266 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47358 * 60.00156 * 18 16 14 20 20 H 1.48500 * 109.47164 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47422 * 300.00270 * 18 16 14 22 22 C 1.53124 * 109.15980 * 302.34618 * 12 11 10 23 23 C 1.46842 * 111.00077 * 65.79321 * 9 8 6 24 24 H 1.09002 * 109.46786 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47204 * 299.99984 * 1 2 3 26 26 H 1.09001 * 109.47050 * 60.00218 * 1 2 3 27 27 H 1.09004 * 109.47654 * 240.00231 * 2 1 3 28 28 H 1.09000 * 109.47569 * 119.99693 * 2 1 3 29 29 H 1.08998 * 117.49729 * 359.97438 * 5 3 2 30 30 H 1.09002 * 117.49252 * 214.97063 * 5 3 2 31 31 H 1.08996 * 109.47126 * 55.00487 * 8 6 3 32 32 H 1.08994 * 109.47164 * 294.99960 * 8 6 3 33 33 H 1.08999 * 109.46089 * 54.14588 * 10 9 8 34 34 H 1.08998 * 109.46294 * 294.17617 * 10 9 8 35 35 H 1.09000 * 109.50632 * 179.12292 * 11 10 9 36 36 H 1.09006 * 109.50216 * 299.24086 * 11 10 9 37 37 H 1.09000 * 109.52181 * 62.25097 * 12 11 10 38 38 H 1.09007 * 109.47349 * 304.99721 * 13 12 11 39 39 H 1.08999 * 109.47500 * 64.99987 * 13 12 11 40 40 H 0.97004 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50272 * 297.71554 * 22 12 11 42 42 H 1.08997 * 109.53375 * 177.61494 * 22 12 11 43 43 H 1.09006 * 109.46447 * 305.84971 * 23 9 8 44 44 H 1.08994 * 109.46873 * 65.82005 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 -0.4817 5 6 2.8438 1.9081 1.2158 6 6 3.5501 1.6580 -0.1183 7 1 3.8920 2.5285 -0.6781 8 6 4.4347 0.4143 -0.2269 9 7 5.8279 0.8226 -0.4512 10 6 6.6660 -0.3330 -0.7955 11 6 8.0720 0.1463 -1.1632 12 6 8.6751 0.9020 0.0241 13 6 10.0568 1.4363 -0.3583 14 6 10.7005 2.0726 0.8466 15 1 10.1763 2.0942 1.7907 16 6 11.9586 2.6273 0.7438 17 7 12.5971 2.6006 -0.4056 18 14 12.7562 3.4167 2.2372 19 1 12.8969 2.4056 3.3157 20 1 14.0973 3.9351 1.8660 21 1 11.9082 4.5373 2.7170 22 6 7.7585 2.0717 0.3934 23 6 6.3615 1.5364 0.7159 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.0092 1.1868 2.0160 30 1 2.7210 2.9434 1.5338 31 1 4.0972 -0.1998 -1.0618 32 1 4.3687 -0.1603 0.6969 33 1 6.2282 -0.8591 -1.6439 34 1 6.7239 -1.0071 0.0590 35 1 8.6982 -0.7129 -1.4037 36 1 8.0163 0.8097 -2.0264 37 1 8.7670 0.2283 0.8760 38 1 10.6795 0.6141 -0.7111 39 1 9.9531 2.1788 -1.1495 40 1 13.4821 2.9911 -0.4780 41 1 7.6978 2.7652 -0.4453 42 1 8.1603 2.5886 1.2648 43 1 5.7026 2.3682 0.9654 44 1 6.4209 0.8536 1.5634 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:49 Heat of formation + Delta-G solvation = -23.345911 kcal Electronic energy + Delta-G solvation = -18707.955027 eV Core-core repulsion = 16044.754279 eV Total energy + Delta-G solvation = -2663.200748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36995 -38.80055 -35.96028 -34.19050 -32.77643 -31.67951 -30.11333 -27.27899 -25.06640 -24.78943 -23.91572 -22.34700 -22.10715 -20.42892 -20.09452 -18.42226 -17.27388 -16.54212 -16.11721 -15.80391 -15.52420 -15.17109 -14.94957 -14.85362 -14.52985 -14.02674 -13.83152 -13.59094 -13.21734 -13.18556 -12.89284 -12.80906 -12.61600 -12.45901 -12.26452 -12.16899 -12.02687 -11.99093 -11.78756 -11.61436 -11.27454 -10.91305 -10.74843 -10.62409 -10.56540 -10.50554 -9.20224 -8.17022 -6.26863 1.39156 1.42170 1.49846 2.41857 2.80475 3.05595 3.15879 3.75840 3.92310 3.97326 4.06741 4.09242 4.14012 4.31780 4.38246 4.48092 4.50918 4.57010 4.62081 4.68141 4.74096 4.77780 4.83831 4.89554 4.93865 4.96914 5.00831 5.12103 5.17029 5.20437 5.25695 5.32315 5.36899 5.39340 5.42186 5.45993 5.53400 5.57924 5.81503 5.89720 6.20382 6.27400 6.32442 6.89079 7.41385 8.94802 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.003786 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.377069 B = 7393.307859 C = 7836.703625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.136 4.136 4 H 0.109 0.891 5 C -0.179 4.179 6 C -0.151 4.151 7 H 0.099 0.901 8 C 0.093 3.907 9 N -0.546 5.546 10 C 0.066 3.934 11 C -0.107 4.107 12 C -0.075 4.075 13 C 0.035 3.965 14 C -0.531 4.531 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.267 1.267 22 C -0.094 4.094 23 C 0.071 3.929 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.046 0.954 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.903 -5.121 1.630 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.155 4.155 4 H 0.127 0.873 5 C -0.216 4.216 6 C -0.170 4.170 7 H 0.117 0.883 8 C -0.034 4.034 9 N -0.271 5.271 10 C -0.061 4.061 11 C -0.145 4.145 12 C -0.093 4.093 13 C -0.002 4.002 14 C -0.569 4.569 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.132 4.132 23 C -0.057 4.057 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -22.740 -4.762 1.155 23.262 hybrid contribution 1.135 0.091 1.124 1.600 sum -21.606 -4.671 2.280 22.222 Atomic orbital electron populations 1.21730 0.94726 1.01987 1.01986 1.21116 0.96534 0.93655 1.01916 1.22521 0.92539 0.98688 1.01725 0.87315 1.23227 1.04569 1.02429 0.91404 1.22280 0.93574 0.99809 1.01331 0.88330 1.21596 0.86518 0.95129 1.00167 1.61884 1.02283 1.25426 1.37483 1.22016 0.92818 0.91178 1.00122 1.21602 0.95374 0.99540 0.97988 1.21086 0.94981 0.96354 0.96917 1.18997 0.92024 0.94034 0.95196 1.21629 1.01381 1.36752 0.97134 0.92217 1.25967 0.98124 0.96975 0.98918 1.70100 1.14173 1.46866 1.26525 0.85566 0.77471 0.79025 0.79399 1.19241 1.20969 1.19153 1.21427 0.93739 0.97399 1.00672 1.21984 0.95329 0.97819 0.90564 0.92161 0.92680 0.92416 0.91492 0.92159 0.89003 0.88642 0.89808 0.94872 0.89299 0.95029 0.91941 0.92683 0.93516 0.99606 0.99451 0.92922 0.93401 0.92681 0.90077 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.87 71.98 0.71 -1.02 16 2 C -0.09 -1.34 5.30 30.59 0.16 -1.18 16 3 C -0.14 -2.21 5.74 -10.79 -0.06 -2.27 16 4 H 0.11 1.64 8.07 -2.39 -0.02 1.62 16 5 C -0.18 -3.20 9.82 30.60 0.30 -2.90 16 6 C -0.15 -3.08 4.70 -10.79 -0.05 -3.13 16 7 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 8 C 0.09 2.05 4.32 86.30 0.37 2.42 16 9 N -0.55 -15.39 4.66 -896.37 -4.17 -19.56 16 10 C 0.07 1.88 5.46 86.33 0.47 2.35 16 11 C -0.11 -3.81 5.38 30.65 0.16 -3.65 16 12 C -0.07 -3.18 2.20 -10.71 -0.02 -3.20 16 13 C 0.03 1.88 4.45 29.85 0.13 2.01 16 14 C -0.53 -30.67 8.45 25.60 0.22 -30.45 16 15 H 0.06 3.30 7.08 -2.91 -0.02 3.28 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 17 N -0.94 -58.33 13.29 21.45 0.28 -58.05 16 18 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C -0.09 -3.68 5.15 30.65 0.16 -3.52 16 23 C 0.07 2.18 5.31 86.33 0.46 2.64 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.95 7.60 -2.38 -0.02 0.93 16 28 H 0.06 0.88 7.88 -2.39 -0.02 0.86 16 29 H 0.09 1.63 7.92 -2.39 -0.02 1.61 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.67 7.44 -2.39 -0.02 1.65 16 32 H 0.03 0.72 7.86 -2.39 -0.02 0.70 16 33 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 39 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 2.29 7.06 -2.39 -0.02 2.27 16 43 H 0.08 2.30 7.10 -2.38 -0.02 2.28 16 44 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -63.84 340.58 2.52 -61.32 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.91 Total: 10.78 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.47 Total: -41.60 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.89 Total: -77.61 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.84 2.52 -61.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.970 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds