Wall clock time and date at job start Mon Mar 30 2020 07:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 H 1.08992 * 115.55397 * 29.32793 * 3 2 1 5 5 C 1.53004 * 117.49633 * 243.61927 * 3 2 1 6 6 C 1.53000 * 60.00211 * 252.51376 * 5 3 2 7 7 H 1.09000 * 117.51711 * 107.48144 * 6 5 3 8 8 C 1.53000 * 117.49685 * 252.51046 * 6 5 3 9 9 N 1.46891 * 109.47311 * 243.61960 * 8 6 5 10 10 C 1.46845 * 111.00444 * 170.00012 * 9 8 6 11 11 C 1.53035 * 109.52776 * 185.83905 * 10 9 8 12 12 C 1.53111 * 109.28186 * 300.82299 * 11 10 9 13 13 C 1.52996 * 109.52536 * 177.55582 * 12 11 10 14 14 C 1.50702 * 109.47159 * 174.99951 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.53129 * 109.15931 * 57.65165 * 12 11 10 23 23 C 1.46846 * 111.00480 * 294.21339 * 9 8 6 24 24 H 1.09004 * 109.47042 * 299.99539 * 1 2 3 25 25 H 1.08997 * 109.47090 * 60.00443 * 1 2 3 26 26 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47146 * 239.99691 * 2 1 3 28 28 H 1.09003 * 109.47382 * 120.00224 * 2 1 3 29 29 H 1.09001 * 117.49843 * 145.02405 * 5 3 2 30 30 H 1.09001 * 117.49927 * 0.02562 * 5 3 2 31 31 H 1.09002 * 109.47044 * 123.62322 * 8 6 5 32 32 H 1.08996 * 109.47147 * 3.62293 * 8 6 5 33 33 H 1.09004 * 109.45753 * 65.82259 * 10 9 8 34 34 H 1.09001 * 109.45286 * 305.85379 * 10 9 8 35 35 H 1.09000 * 109.50581 * 180.87914 * 11 10 9 36 36 H 1.09001 * 109.53388 * 60.78480 * 11 10 9 37 37 H 1.09001 * 109.52756 * 297.68720 * 12 11 10 38 38 H 1.09004 * 109.47066 * 55.00154 * 13 12 11 39 39 H 1.08994 * 109.47405 * 294.99984 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50074 * 62.28977 * 22 12 11 42 42 H 1.09002 * 109.50131 * 182.40145 * 22 12 11 43 43 H 1.09001 * 109.46333 * 294.17412 * 23 9 8 44 44 H 1.09003 * 109.45832 * 54.14264 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4816 5 6 2.8439 1.9075 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7719 0.1964 8 6 4.0300 2.8804 0.9031 9 7 5.4949 2.8512 1.0075 10 6 6.0099 4.1179 1.5427 11 6 7.5396 4.1066 1.5012 12 6 8.0593 2.9308 2.3330 13 6 9.5858 2.8779 2.2457 14 6 10.1042 1.7984 3.1607 15 1 9.4138 1.2087 3.7455 16 6 11.4594 1.5594 3.2464 17 7 12.3000 2.2772 2.5339 18 14 12.1013 0.2161 4.3746 19 1 12.1746 -1.0650 3.6272 20 1 13.4555 0.5835 4.8610 21 1 11.1844 0.0620 5.5325 22 6 7.4700 1.6282 1.7847 23 6 5.9423 1.7114 1.8181 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.7213 2.9427 -1.5344 30 1 3.0092 1.1859 -2.0159 31 1 3.5943 2.8648 1.9021 32 1 3.7207 3.7886 0.3859 33 1 5.6754 4.2395 2.5730 34 1 5.6363 4.9455 0.9396 35 1 7.9218 5.0407 1.9130 36 1 7.8755 3.9994 0.4698 37 1 7.7580 3.0587 3.3727 38 1 10.0005 3.8398 2.5473 39 1 9.8838 2.6592 1.2204 40 1 13.2535 2.1093 2.5945 41 1 7.8041 1.4815 0.7577 42 1 7.8024 0.7914 2.3991 43 1 5.6082 1.8442 2.8471 44 1 5.5196 0.7910 1.4150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:52 Heat of formation + Delta-G solvation = -7.599403 kcal Electronic energy + Delta-G solvation = -18580.684762 eV Core-core repulsion = 15918.166834 eV Total energy + Delta-G solvation = -2662.517928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.14019 -37.71107 -34.40435 -32.57402 -31.80385 -30.34527 -28.36596 -25.77302 -23.97693 -23.31471 -22.75029 -20.95854 -20.50115 -20.02448 -18.84871 -16.23018 -15.91154 -15.20664 -14.89971 -14.49841 -14.45942 -14.25542 -13.53836 -13.39975 -13.05291 -12.89872 -12.51343 -12.27097 -12.04626 -11.80720 -11.70900 -11.41047 -11.31301 -11.14897 -11.04637 -10.75585 -10.61437 -10.58048 -10.23458 -9.96315 -9.88765 -9.77836 -9.46955 -8.99308 -8.83327 -8.29470 -8.00484 -5.94386 -3.95627 3.34417 3.40756 3.43766 3.62263 4.11844 4.50000 4.56978 4.73512 4.84613 4.98458 5.13679 5.21297 5.35175 5.40251 5.41203 5.46649 5.54503 5.56586 5.61874 5.74536 5.76898 5.79555 5.82007 5.88220 5.92759 5.94818 6.02791 6.14487 6.18392 6.24749 6.35404 6.50667 6.63813 6.72658 7.03367 7.15975 7.24831 7.42303 7.45606 7.74432 7.91621 8.06891 8.50122 9.11056 9.67591 11.17022 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.003839 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.263872 B = 7292.670639 C = 7887.108489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.155 4.155 4 H 0.100 0.900 5 C -0.170 4.170 6 C -0.139 4.139 7 H 0.109 0.891 8 C 0.086 3.914 9 N -0.534 5.534 10 C 0.060 3.940 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.100 4.100 23 C 0.055 3.945 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 -0.591 -5.015 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.173 4.173 4 H 0.118 0.882 5 C -0.207 4.207 6 C -0.157 4.157 7 H 0.127 0.873 8 C -0.042 4.042 9 N -0.259 5.259 10 C -0.068 4.068 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.137 4.137 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.044 0.956 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.395 -0.618 -5.512 21.136 hybrid contribution 0.161 -0.590 1.401 1.529 sum -20.234 -1.208 -4.111 20.683 Atomic orbital electron populations 1.21742 0.95663 1.01417 1.01761 1.21110 0.95738 0.94318 1.01987 1.22485 0.93861 0.97865 1.03124 0.88160 1.23139 1.03970 1.02008 0.91555 1.22427 0.93590 1.00288 0.99396 0.87279 1.21617 0.88350 0.96501 0.97699 1.61891 1.08170 1.03545 1.52262 1.22091 0.97005 0.90739 0.96929 1.21685 0.92575 0.99278 1.01401 1.21231 0.99175 0.92556 0.97035 1.19116 0.87886 0.96789 0.97111 1.21266 0.91616 1.17761 1.24540 0.92730 1.25023 0.97216 0.96364 0.95935 1.69970 1.02466 1.40137 1.41047 0.86653 0.78208 0.82347 0.81143 1.20729 1.21329 1.19965 1.21547 0.91304 0.99126 1.01763 1.22241 0.97829 0.93038 0.94178 0.92801 0.92717 0.92851 0.91896 0.91722 0.89068 0.89047 0.95035 0.91177 0.95534 0.91770 0.92200 0.91600 0.93122 0.96804 0.96515 0.93123 0.91895 0.91011 0.95632 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.87 37.16 0.37 -0.71 16 2 C -0.09 -0.80 6.22 -26.73 -0.17 -0.97 16 3 C -0.15 -1.45 5.46 -90.62 -0.49 -1.95 16 4 H 0.10 0.90 8.07 -51.93 -0.42 0.49 16 5 C -0.17 -1.68 9.82 -26.73 -0.26 -1.94 16 6 C -0.14 -1.56 5.39 -90.62 -0.49 -2.05 16 7 H 0.11 1.35 6.33 -51.93 -0.33 1.02 16 8 C 0.09 1.07 5.24 -3.83 -0.02 1.05 16 9 N -0.53 -8.02 4.66 -234.68 -1.09 -9.12 16 10 C 0.06 0.91 5.46 -3.84 -0.02 0.89 16 11 C -0.11 -1.99 5.38 -26.66 -0.14 -2.13 16 12 C -0.08 -1.69 2.20 -90.50 -0.20 -1.89 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.49 8.45 -34.44 -0.29 -14.78 16 15 H 0.05 1.50 7.08 -52.49 -0.37 1.13 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 23 C 0.05 0.87 5.30 -3.84 -0.02 0.85 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.86 8.03 -51.93 -0.42 0.45 16 30 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.81 7.72 -51.93 -0.40 0.41 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.46 7.05 -51.93 -0.37 1.09 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -29.49 341.15 -10.83 -40.31 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.50 Total: -3.06 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.10 Total: -23.59 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.36 Total: -35.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.49 -10.83 -40.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.716 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds