Wall clock time and date at job start Mon Mar 30 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 H 1.08992 * 115.55397 * 29.32793 * 3 2 1 5 5 C 1.53004 * 117.49633 * 243.61927 * 3 2 1 6 6 C 1.53000 * 60.00211 * 252.51376 * 5 3 2 7 7 H 1.09000 * 117.51711 * 107.48144 * 6 5 3 8 8 C 1.53000 * 117.49685 * 252.51046 * 6 5 3 9 9 N 1.46891 * 109.47311 * 243.61960 * 8 6 5 10 10 C 1.46845 * 111.00444 * 170.00012 * 9 8 6 11 11 C 1.53035 * 109.52776 * 185.83905 * 10 9 8 12 12 C 1.53111 * 109.28186 * 300.82299 * 11 10 9 13 13 C 1.52996 * 109.52536 * 177.55582 * 12 11 10 14 14 C 1.50702 * 109.47159 * 174.99951 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.53129 * 109.15931 * 57.65165 * 12 11 10 23 23 C 1.46846 * 111.00480 * 294.21339 * 9 8 6 24 24 H 1.09004 * 109.47042 * 299.99539 * 1 2 3 25 25 H 1.08997 * 109.47090 * 60.00443 * 1 2 3 26 26 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47146 * 239.99691 * 2 1 3 28 28 H 1.09003 * 109.47382 * 120.00224 * 2 1 3 29 29 H 1.09001 * 117.49843 * 145.02405 * 5 3 2 30 30 H 1.09001 * 117.49927 * 0.02562 * 5 3 2 31 31 H 1.09002 * 109.47044 * 123.62322 * 8 6 5 32 32 H 1.08996 * 109.47147 * 3.62293 * 8 6 5 33 33 H 1.09004 * 109.45753 * 65.82259 * 10 9 8 34 34 H 1.09001 * 109.45286 * 305.85379 * 10 9 8 35 35 H 1.09000 * 109.50581 * 180.87914 * 11 10 9 36 36 H 1.09001 * 109.53388 * 60.78480 * 11 10 9 37 37 H 1.09001 * 109.52756 * 297.68720 * 12 11 10 38 38 H 1.09004 * 109.47066 * 55.00154 * 13 12 11 39 39 H 1.08994 * 109.47405 * 294.99984 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50074 * 62.28977 * 22 12 11 42 42 H 1.09002 * 109.50131 * 182.40145 * 22 12 11 43 43 H 1.09001 * 109.46333 * 294.17412 * 23 9 8 44 44 H 1.09003 * 109.45832 * 54.14264 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4816 5 6 2.8439 1.9075 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7719 0.1964 8 6 4.0300 2.8804 0.9031 9 7 5.4949 2.8512 1.0075 10 6 6.0099 4.1179 1.5427 11 6 7.5396 4.1066 1.5012 12 6 8.0593 2.9308 2.3330 13 6 9.5858 2.8779 2.2457 14 6 10.1042 1.7984 3.1607 15 1 9.4138 1.2087 3.7455 16 6 11.4594 1.5594 3.2464 17 7 12.3000 2.2772 2.5339 18 14 12.1013 0.2161 4.3746 19 1 12.1746 -1.0650 3.6272 20 1 13.4555 0.5835 4.8610 21 1 11.1844 0.0620 5.5325 22 6 7.4700 1.6282 1.7847 23 6 5.9423 1.7114 1.8181 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.7213 2.9427 -1.5344 30 1 3.0092 1.1859 -2.0159 31 1 3.5943 2.8648 1.9021 32 1 3.7207 3.7886 0.3859 33 1 5.6754 4.2395 2.5730 34 1 5.6363 4.9455 0.9396 35 1 7.9218 5.0407 1.9130 36 1 7.8755 3.9994 0.4698 37 1 7.7580 3.0587 3.3727 38 1 10.0005 3.8398 2.5473 39 1 9.8838 2.6592 1.2204 40 1 13.2535 2.1093 2.5945 41 1 7.8041 1.4815 0.7577 42 1 7.8024 0.7914 2.3991 43 1 5.6082 1.8442 2.8471 44 1 5.5196 0.7910 1.4150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:51 Heat of formation + Delta-G solvation = -22.781074 kcal Electronic energy + Delta-G solvation = -18581.343089 eV Core-core repulsion = 15918.166834 eV Total energy + Delta-G solvation = -2663.176255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31203 -38.73978 -36.02383 -34.26568 -32.84073 -31.72828 -30.04781 -27.24484 -25.12193 -24.53652 -24.12615 -22.42211 -21.37809 -20.97957 -20.41910 -18.42430 -17.06880 -16.49132 -16.09022 -16.01975 -15.37496 -15.22212 -14.99510 -14.79835 -14.40051 -14.20633 -13.83713 -13.62428 -13.25305 -12.96021 -12.90073 -12.89429 -12.57038 -12.50390 -12.24776 -12.14454 -12.03850 -12.00206 -11.83555 -11.61035 -11.27675 -10.87048 -10.77169 -10.69203 -10.52990 -10.50601 -9.17406 -8.17289 -6.26990 1.39334 1.40629 1.51445 2.41796 2.75301 3.12254 3.15961 3.71655 3.95494 3.98555 4.08526 4.10279 4.14842 4.32738 4.36164 4.49259 4.50181 4.53309 4.62473 4.65765 4.70538 4.80634 4.82661 4.88361 4.90562 4.95523 5.03408 5.11272 5.17010 5.18857 5.25557 5.30884 5.37779 5.38833 5.41670 5.45869 5.54796 5.57896 5.81321 5.89596 6.19587 6.27033 6.32012 6.89173 7.41305 8.94764 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.003839 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.263872 B = 7292.670639 C = 7887.108489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.141 4.141 4 H 0.108 0.892 5 C -0.168 4.168 6 C -0.155 4.155 7 H 0.096 0.904 8 C 0.091 3.909 9 N -0.545 5.545 10 C 0.067 3.933 11 C -0.107 4.107 12 C -0.075 4.075 13 C 0.034 3.966 14 C -0.530 4.530 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.094 4.094 23 C 0.066 3.934 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.047 0.953 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.938 -1.138 -4.622 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.159 4.159 4 H 0.126 0.874 5 C -0.205 4.205 6 C -0.173 4.173 7 H 0.114 0.886 8 C -0.037 4.037 9 N -0.270 5.270 10 C -0.061 4.061 11 C -0.145 4.145 12 C -0.093 4.093 13 C -0.003 4.003 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.132 4.132 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.579 -1.166 -5.121 23.182 hybrid contribution 0.851 -0.395 1.235 1.551 sum -21.728 -1.561 -3.886 22.128 Atomic orbital electron populations 1.21723 0.94594 1.01983 1.02050 1.21137 0.96670 0.93736 1.01798 1.22537 0.92597 0.98507 1.02282 0.87361 1.23201 1.03449 1.02521 0.91307 1.22344 0.94774 0.99509 1.00694 0.88604 1.21644 0.86198 0.97566 0.98248 1.61856 1.10246 1.02969 1.51925 1.22016 0.94446 0.91725 0.97902 1.21595 0.95103 0.97872 0.99914 1.21086 0.95539 0.95071 0.97644 1.19004 0.91675 0.94809 0.94814 1.21657 0.92143 1.18205 1.24766 0.92192 1.25975 0.97571 0.98909 0.97580 1.70111 1.02859 1.41994 1.42724 0.85502 0.77607 0.79110 0.79178 1.19831 1.20889 1.18721 1.21419 0.94105 0.97467 1.00197 1.22055 0.94908 0.94429 0.94758 0.92512 0.92409 0.92221 0.91994 0.92075 0.88411 0.88889 0.94652 0.89938 0.94966 0.89344 0.91946 0.92733 0.93471 0.99594 0.99466 0.92936 0.93407 0.92592 0.95347 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.87 71.98 0.71 -1.08 16 2 C -0.10 -1.44 6.22 30.59 0.19 -1.25 16 3 C -0.14 -2.30 5.46 -10.79 -0.06 -2.36 16 4 H 0.11 1.63 8.07 -2.39 -0.02 1.61 16 5 C -0.17 -2.95 9.82 30.60 0.30 -2.65 16 6 C -0.15 -3.17 5.39 -10.79 -0.06 -3.23 16 7 H 0.10 2.23 6.33 -2.39 -0.02 2.22 16 8 C 0.09 2.00 5.24 86.30 0.45 2.46 16 9 N -0.55 -15.39 4.66 -896.40 -4.17 -19.56 16 10 C 0.07 1.89 5.46 86.33 0.47 2.36 16 11 C -0.11 -3.81 5.38 30.64 0.16 -3.64 16 12 C -0.07 -3.17 2.20 -10.71 -0.02 -3.20 16 13 C 0.03 1.85 4.45 29.85 0.13 1.98 16 14 C -0.53 -30.56 8.45 25.60 0.22 -30.35 16 15 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 18 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 C -0.09 -3.65 5.15 30.65 0.16 -3.49 16 23 C 0.07 2.03 5.30 86.32 0.46 2.48 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.94 7.88 -2.39 -0.02 0.92 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 30 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 31 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.08 1.63 7.72 -2.39 -0.02 1.61 16 33 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 2.31 7.05 -2.39 -0.02 2.29 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 2.28 6.16 -2.39 -0.01 2.26 16 Total: -1.00 -64.01 341.15 2.63 -61.38 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.92 Total: 10.80 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.58 Total: -41.69 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.89 Total: -77.60 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.01 2.63 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.598 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds