Wall clock time and date at job start Mon Mar 30 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 H 1.09000 * 115.56385 * 29.31206 * 3 2 1 5 5 C 1.53074 * 117.51115 * 243.60832 * 3 2 1 6 6 C 1.52996 * 59.98618 * 252.52066 * 5 3 2 7 7 H 1.08997 * 117.50408 * 252.49863 * 6 5 3 8 8 C 1.53006 * 117.49780 * 107.49581 * 6 5 3 9 9 N 1.46903 * 109.46632 * 116.25913 * 8 6 5 10 10 C 1.46846 * 110.99717 * 190.00023 * 9 8 6 11 11 C 1.53036 * 109.52384 * 174.15896 * 10 9 8 12 12 C 1.53123 * 109.27788 * 59.18000 * 11 10 9 13 13 C 1.52995 * 109.52352 * 182.44354 * 12 11 10 14 14 C 1.50700 * 109.47236 * 185.00263 * 13 12 11 15 15 H 1.08007 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00266 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47434 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47171 * 120.00153 * 18 16 14 21 21 H 1.48503 * 109.47223 * 240.00247 * 18 16 14 22 22 C 1.53124 * 109.15980 * 302.34618 * 12 11 10 23 23 C 1.46842 * 111.00077 * 65.79321 * 9 8 6 24 24 H 1.08996 * 109.47749 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47035 * 300.00267 * 1 2 3 26 26 H 1.09002 * 109.47125 * 59.99703 * 1 2 3 27 27 H 1.08999 * 109.47035 * 239.99733 * 2 1 3 28 28 H 1.09002 * 109.47125 * 120.00297 * 2 1 3 29 29 H 1.09004 * 117.49715 * 145.03912 * 5 3 2 30 30 H 1.08996 * 117.53573 * 359.97438 * 5 3 2 31 31 H 1.08996 * 109.47126 * 356.26106 * 8 6 5 32 32 H 1.08994 * 109.47164 * 236.25578 * 8 6 5 33 33 H 1.08999 * 109.46089 * 54.14588 * 10 9 8 34 34 H 1.08994 * 109.45639 * 294.17306 * 10 9 8 35 35 H 1.09000 * 109.50632 * 179.12292 * 11 10 9 36 36 H 1.09006 * 109.50216 * 299.24086 * 11 10 9 37 37 H 1.09000 * 109.52181 * 62.25097 * 12 11 10 38 38 H 1.09007 * 109.47349 * 304.99721 * 13 12 11 39 39 H 1.08999 * 109.47500 * 64.99987 * 13 12 11 40 40 H 0.97004 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50272 * 297.71554 * 22 12 11 42 42 H 1.08999 * 109.50255 * 177.59425 * 22 12 11 43 43 H 1.09006 * 109.46447 * 305.84971 * 23 9 8 44 44 H 1.08994 * 109.46873 * 65.82005 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8447 1.9079 -1.2161 6 6 3.5502 1.6578 0.1182 7 1 3.8922 2.5285 0.6777 8 6 4.4347 0.4141 0.2275 9 7 5.8282 0.8224 0.4496 10 6 6.7385 -0.3231 0.3240 11 6 8.1870 0.1622 0.4164 12 6 8.4007 0.8628 1.7610 13 6 9.8299 1.4037 1.8343 14 6 10.0779 1.9840 3.2028 15 1 9.2942 1.9689 3.9459 16 6 11.3051 2.5342 3.5063 17 7 12.2595 2.5522 2.6017 18 14 11.6122 3.2542 5.2024 19 1 10.3877 3.1108 6.0303 20 1 12.7352 2.5309 5.8513 21 1 11.9581 4.6927 5.0744 22 6 7.4078 2.0217 1.8873 23 6 5.9820 1.4824 1.7523 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7222 2.9432 -1.5344 30 1 3.0113 1.1867 -2.0162 31 1 4.3675 -0.1617 -0.6955 32 1 4.0980 -0.1988 1.0635 33 1 6.5792 -0.8097 -0.6382 34 1 6.5415 -1.0331 1.1271 35 1 8.8620 -0.6901 0.3387 36 1 8.3887 0.8620 -0.3947 37 1 8.2369 0.1528 2.5717 38 1 10.5351 0.5932 1.6502 39 1 9.9638 2.1799 1.0808 40 1 13.1229 2.9397 2.8151 41 1 7.5973 2.7507 1.0994 42 1 7.5262 2.4979 2.8606 43 1 5.2732 2.3072 1.8275 44 1 5.7886 0.7638 2.5487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723125088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:57 Heat of formation + Delta-G solvation = -6.762392 kcal Electronic energy + Delta-G solvation = -18679.359853 eV Core-core repulsion = 16016.878221 eV Total energy + Delta-G solvation = -2662.481632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21680 -37.73942 -34.32201 -32.45628 -31.85200 -30.34161 -28.40074 -25.74349 -24.12154 -23.33409 -22.76713 -21.29128 -20.61853 -19.23069 -18.85373 -16.31525 -16.13398 -15.23196 -14.85964 -14.52736 -14.45921 -14.13979 -13.60711 -13.42644 -13.06264 -12.86939 -12.54950 -12.21078 -12.03203 -11.85390 -11.67303 -11.53659 -11.31320 -11.11827 -10.96948 -10.75326 -10.59703 -10.58673 -10.22761 -9.91518 -9.87299 -9.82561 -9.47060 -8.99499 -8.82595 -8.29872 -7.99794 -5.94570 -3.95778 3.33356 3.40955 3.44671 3.63431 4.16348 4.48118 4.49929 4.74156 4.81747 4.99973 5.10331 5.26466 5.34447 5.40563 5.41172 5.45190 5.56058 5.57004 5.61380 5.72796 5.78916 5.79319 5.81984 5.88975 5.92821 5.94672 6.02830 6.15825 6.18881 6.22806 6.34106 6.50739 6.63912 6.72795 7.03514 7.15956 7.24891 7.42684 7.45867 7.74588 7.91527 8.06770 8.50065 9.11144 9.67565 11.16860 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.040280 B = 0.003744 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.965249 B = 7476.049519 C = 7785.193555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.155 4.155 4 H 0.101 0.899 5 C -0.170 4.170 6 C -0.139 4.139 7 H 0.109 0.891 8 C 0.088 3.912 9 N -0.534 5.534 10 C 0.060 3.940 11 C -0.112 4.112 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.100 4.100 23 C 0.054 3.946 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.017 0.983 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -4.633 -6.098 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.173 4.173 4 H 0.119 0.881 5 C -0.207 4.207 6 C -0.158 4.158 7 H 0.127 0.873 8 C -0.040 4.040 9 N -0.259 5.259 10 C -0.068 4.068 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.137 4.137 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -19.839 -4.250 -6.484 21.300 hybrid contribution 0.095 -0.085 1.544 1.549 sum -19.743 -4.335 -4.940 20.809 Atomic orbital electron populations 1.21745 0.95681 1.01399 1.01776 1.21087 0.95687 0.94454 1.01915 1.22489 0.93810 0.97896 1.03151 0.88051 1.23110 1.04137 1.01997 0.91486 1.22400 0.92174 1.00361 1.00844 0.87327 1.21581 0.87912 0.94395 1.00104 1.61899 1.03937 1.27692 1.32382 1.22087 0.93959 0.91100 0.99608 1.21690 0.93347 1.00209 0.99702 1.21232 0.98427 0.95901 0.94428 1.19121 0.89107 0.95859 0.96848 1.21303 0.97642 1.37780 0.98369 0.92674 1.25022 0.96373 0.96341 0.96823 1.69977 1.04010 1.45970 1.33665 0.86602 0.78140 0.78837 0.84815 1.19799 1.21140 1.21092 1.21549 0.91408 0.98472 1.02317 1.22241 0.99191 0.97617 0.88251 0.92880 0.92783 0.92718 0.91925 0.91748 0.89115 0.88966 0.91205 0.94957 0.91786 0.95544 0.92199 0.91599 0.93130 0.96799 0.96506 0.93178 0.91895 0.91007 0.91489 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.87 37.16 0.37 -0.71 16 2 C -0.09 -0.79 5.30 -26.73 -0.14 -0.94 16 3 C -0.15 -1.45 5.74 -90.58 -0.52 -1.97 16 4 H 0.10 0.90 8.07 -51.93 -0.42 0.49 16 5 C -0.17 -1.69 9.83 -26.70 -0.26 -1.95 16 6 C -0.14 -1.57 5.66 -90.62 -0.51 -2.08 16 7 H 0.11 1.33 6.33 -51.93 -0.33 1.00 16 8 C 0.09 1.08 4.32 -3.82 -0.02 1.07 16 9 N -0.53 -8.02 4.66 -234.67 -1.09 -9.11 16 10 C 0.06 0.91 5.46 -3.83 -0.02 0.89 16 11 C -0.11 -1.99 5.38 -26.65 -0.14 -2.13 16 12 C -0.08 -1.69 2.20 -90.49 -0.20 -1.89 16 13 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 14 C -0.51 -14.46 8.45 -34.44 -0.29 -14.75 16 15 H 0.06 1.52 7.08 -52.48 -0.37 1.14 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 23 C 0.05 0.87 5.30 -3.83 -0.02 0.85 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 28 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 31 H 0.07 0.81 7.72 -51.93 -0.40 0.41 16 32 H 0.03 0.40 7.58 -51.93 -0.39 0.00 16 33 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 43 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -29.51 338.80 -10.83 -40.34 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -8.44 Total: -3.06 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -2.12 Total: -23.59 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.36 Total: -35.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.51 -10.83 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.580 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds