Wall clock time and date at job start Mon Mar 30 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47301 * 2 1 4 4 H 1.09000 * 115.56385 * 29.31206 * 3 2 1 5 5 C 1.53074 * 117.51115 * 243.60832 * 3 2 1 6 6 C 1.52996 * 59.98618 * 252.52066 * 5 3 2 7 7 H 1.08997 * 117.50408 * 252.49863 * 6 5 3 8 8 C 1.53006 * 117.49780 * 107.49581 * 6 5 3 9 9 N 1.46903 * 109.46632 * 116.25913 * 8 6 5 10 10 C 1.46846 * 110.99717 * 190.00023 * 9 8 6 11 11 C 1.53036 * 109.52384 * 174.15896 * 10 9 8 12 12 C 1.53123 * 109.27788 * 59.18000 * 11 10 9 13 13 C 1.52995 * 109.52352 * 182.44354 * 12 11 10 14 14 C 1.50700 * 109.47236 * 185.00263 * 13 12 11 15 15 H 1.08007 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00266 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00126 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47434 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47171 * 120.00153 * 18 16 14 21 21 H 1.48503 * 109.47223 * 240.00247 * 18 16 14 22 22 C 1.53124 * 109.15980 * 302.34618 * 12 11 10 23 23 C 1.46842 * 111.00077 * 65.79321 * 9 8 6 24 24 H 1.08996 * 109.47749 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47035 * 300.00267 * 1 2 3 26 26 H 1.09002 * 109.47125 * 59.99703 * 1 2 3 27 27 H 1.08999 * 109.47035 * 239.99733 * 2 1 3 28 28 H 1.09002 * 109.47125 * 120.00297 * 2 1 3 29 29 H 1.09004 * 117.49715 * 145.03912 * 5 3 2 30 30 H 1.08996 * 117.53573 * 359.97438 * 5 3 2 31 31 H 1.08996 * 109.47126 * 356.26106 * 8 6 5 32 32 H 1.08994 * 109.47164 * 236.25578 * 8 6 5 33 33 H 1.08999 * 109.46089 * 54.14588 * 10 9 8 34 34 H 1.08994 * 109.45639 * 294.17306 * 10 9 8 35 35 H 1.09000 * 109.50632 * 179.12292 * 11 10 9 36 36 H 1.09006 * 109.50216 * 299.24086 * 11 10 9 37 37 H 1.09000 * 109.52181 * 62.25097 * 12 11 10 38 38 H 1.09007 * 109.47349 * 304.99721 * 13 12 11 39 39 H 1.08999 * 109.47500 * 64.99987 * 13 12 11 40 40 H 0.97004 * 120.00396 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50272 * 297.71554 * 22 12 11 42 42 H 1.08999 * 109.50255 * 177.59425 * 22 12 11 43 43 H 1.09006 * 109.46447 * 305.84971 * 23 9 8 44 44 H 1.08994 * 109.46873 * 65.82005 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8447 1.9079 -1.2161 6 6 3.5502 1.6578 0.1182 7 1 3.8922 2.5285 0.6777 8 6 4.4347 0.4141 0.2275 9 7 5.8282 0.8224 0.4496 10 6 6.7385 -0.3231 0.3240 11 6 8.1870 0.1622 0.4164 12 6 8.4007 0.8628 1.7610 13 6 9.8299 1.4037 1.8343 14 6 10.0779 1.9840 3.2028 15 1 9.2942 1.9689 3.9459 16 6 11.3051 2.5342 3.5063 17 7 12.2595 2.5522 2.6017 18 14 11.6122 3.2542 5.2024 19 1 10.3877 3.1108 6.0303 20 1 12.7352 2.5309 5.8513 21 1 11.9581 4.6927 5.0744 22 6 7.4078 2.0217 1.8873 23 6 5.9820 1.4824 1.7523 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.7222 2.9432 -1.5344 30 1 3.0113 1.1867 -2.0162 31 1 4.3675 -0.1617 -0.6955 32 1 4.0980 -0.1988 1.0635 33 1 6.5792 -0.8097 -0.6382 34 1 6.5415 -1.0331 1.1271 35 1 8.8620 -0.6901 0.3387 36 1 8.3887 0.8620 -0.3947 37 1 8.2369 0.1528 2.5717 38 1 10.5351 0.5932 1.6502 39 1 9.9638 2.1799 1.0808 40 1 13.1229 2.9397 2.8151 41 1 7.5973 2.7507 1.0994 42 1 7.5262 2.4979 2.8606 43 1 5.2732 2.3072 1.8275 44 1 5.7886 0.7638 2.5487 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723125088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:57 Heat of formation + Delta-G solvation = -22.070147 kcal Electronic energy + Delta-G solvation = -18680.023647 eV Core-core repulsion = 16016.878221 eV Total energy + Delta-G solvation = -2663.145426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.36008 -38.80213 -35.97521 -34.19509 -32.77370 -31.72219 -30.09511 -27.25196 -25.05312 -24.74962 -24.12299 -22.44801 -21.90574 -20.43230 -20.07678 -18.42976 -17.27806 -16.52895 -16.19082 -15.90541 -15.45334 -15.19934 -14.86783 -14.82240 -14.53298 -14.19838 -13.81002 -13.49987 -13.29150 -13.11902 -12.94484 -12.75748 -12.59134 -12.46716 -12.27856 -12.19337 -12.03122 -11.99766 -11.76729 -11.56758 -11.27351 -10.86783 -10.74016 -10.66376 -10.56823 -10.51904 -9.16696 -8.17431 -6.27057 1.39169 1.39342 1.52477 2.41630 2.76759 3.13023 3.16023 3.71562 3.90573 4.00586 4.06132 4.09026 4.14494 4.32690 4.37420 4.48980 4.49758 4.57129 4.62374 4.67356 4.70449 4.80547 4.82245 4.89560 4.90770 4.96206 5.02864 5.11279 5.17273 5.20110 5.26136 5.32109 5.37578 5.38673 5.41976 5.46042 5.53328 5.58021 5.81372 5.89680 6.19834 6.27255 6.32187 6.89309 7.41319 8.94804 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.040280 B = 0.003744 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.965249 B = 7476.049519 C = 7785.193555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.141 4.141 4 H 0.107 0.893 5 C -0.169 4.169 6 C -0.157 4.157 7 H 0.096 0.904 8 C 0.094 3.906 9 N -0.545 5.545 10 C 0.067 3.933 11 C -0.107 4.107 12 C -0.075 4.075 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.961 3.039 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.094 4.094 23 C 0.066 3.934 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.047 0.953 38 H -0.014 1.014 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.300 -5.066 -5.674 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.160 4.160 4 H 0.125 0.875 5 C -0.205 4.205 6 C -0.175 4.175 7 H 0.115 0.885 8 C -0.034 4.034 9 N -0.270 5.270 10 C -0.061 4.061 11 C -0.145 4.145 12 C -0.093 4.093 13 C -0.003 4.003 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.577 5.577 18 Si 0.786 3.214 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.132 4.132 23 C -0.062 4.062 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -22.013 -4.691 -6.064 23.310 hybrid contribution 0.786 0.053 1.362 1.573 sum -21.227 -4.638 -4.702 22.231 Atomic orbital electron populations 1.21730 0.94747 1.01979 1.01981 1.21106 0.96514 0.93659 1.01881 1.22549 0.92514 0.98662 1.02277 0.87527 1.23172 1.03636 1.02442 0.91294 1.22330 0.93384 0.99665 1.02124 0.88547 1.21589 0.86090 0.94992 1.00689 1.61865 1.05678 1.27926 1.31576 1.22012 0.91750 0.91152 1.01167 1.21600 0.95961 0.99731 0.97197 1.21088 0.95483 0.96516 0.96258 1.19009 0.91998 0.94030 0.95291 1.21682 0.97950 1.37749 0.99253 0.92196 1.25971 0.96137 0.96755 1.01193 1.70114 1.04586 1.46968 1.36035 0.85454 0.78397 0.77970 0.79575 1.18518 1.20511 1.20502 1.21419 0.93495 0.97456 1.00815 1.22058 0.96774 0.98266 0.89077 0.92165 0.92644 0.92467 0.91693 0.92033 0.88798 0.88479 0.90115 0.94588 0.89389 0.94966 0.91939 0.92727 0.93468 0.99585 0.99447 0.92940 0.93385 0.92616 0.89960 0.95356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.87 71.98 0.71 -1.05 16 2 C -0.09 -1.35 5.30 30.59 0.16 -1.19 16 3 C -0.14 -2.32 5.74 -10.77 -0.06 -2.38 16 4 H 0.11 1.65 8.07 -2.39 -0.02 1.63 16 5 C -0.17 -2.97 9.83 30.62 0.30 -2.67 16 6 C -0.16 -3.21 5.66 -10.79 -0.06 -3.27 16 7 H 0.10 2.22 6.33 -2.39 -0.02 2.21 16 8 C 0.09 2.07 4.32 86.30 0.37 2.44 16 9 N -0.55 -15.40 4.66 -896.38 -4.17 -19.58 16 10 C 0.07 1.89 5.46 86.33 0.47 2.36 16 11 C -0.11 -3.81 5.38 30.65 0.16 -3.64 16 12 C -0.07 -3.17 2.20 -10.71 -0.02 -3.20 16 13 C 0.03 1.83 4.45 29.85 0.13 1.97 16 14 C -0.53 -30.47 8.45 25.60 0.22 -30.25 16 15 H 0.06 3.32 7.08 -2.91 -0.02 3.30 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 17 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 C -0.09 -3.65 5.15 30.65 0.16 -3.49 16 23 C 0.07 2.02 5.30 86.33 0.46 2.48 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.91 7.88 -2.39 -0.02 0.89 16 28 H 0.06 0.93 7.60 -2.39 -0.02 0.91 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.62 7.92 -2.39 -0.02 1.60 16 31 H 0.08 1.62 7.72 -2.39 -0.02 1.60 16 32 H 0.04 0.78 7.58 -2.39 -0.02 0.77 16 33 H 0.09 2.11 8.02 -2.39 -0.02 2.09 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.06 2.30 7.05 -2.39 -0.02 2.29 16 43 H 0.08 2.28 6.16 -2.38 -0.01 2.27 16 44 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -64.01 338.80 2.52 -61.49 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.92 Total: 10.60 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.46 Total: -41.64 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -3.89 Total: -77.58 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.01 2.52 -61.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723125088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.418 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds