Wall clock time and date at job start Mon Mar 30 2020 07:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 H 1.09000 * 109.47169 * 56.84461 * 3 2 1 5 5 C 1.50710 * 109.46658 * 176.83716 * 3 2 1 6 6 H 1.08002 * 119.99473 * 120.00557 * 5 3 2 7 7 C 1.37874 * 120.00120 * 299.72282 * 5 3 2 8 8 N 1.31515 * 120.00196 * 0.27786 * 7 5 3 9 9 Si 1.86804 * 119.99915 * 180.27727 * 7 5 3 10 10 H 1.48495 * 109.47078 * 60.00092 * 9 7 5 11 11 H 1.48495 * 109.47056 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46674 * 300.00228 * 9 7 5 13 13 N 1.46896 * 109.47164 * 296.83669 * 3 2 1 14 14 C 1.46898 * 110.99964 * 299.27484 * 13 3 2 15 15 C 1.46900 * 111.00102 * 175.32248 * 13 3 2 16 16 C 1.52942 * 109.41140 * 302.71365 * 15 13 3 17 17 C 1.53181 * 109.45072 * 176.91011 * 16 15 13 18 18 C 1.53151 * 108.88313 * 56.56536 * 17 16 15 19 19 C 1.52845 * 117.67904 * 91.49854 * 18 17 16 20 20 C 1.52803 * 117.74889 * 160.37713 * 18 17 16 21 21 C 1.53147 * 115.00401 * 306.05765 * 18 17 16 22 22 C 1.52941 * 109.41443 * 182.34981 * 15 13 3 23 23 H 1.09000 * 109.47086 * 295.30442 * 1 2 3 24 24 H 1.09002 * 109.47116 * 55.30954 * 1 2 3 25 25 H 1.09006 * 109.46977 * 175.30668 * 1 2 3 26 26 H 1.09002 * 109.47251 * 239.99645 * 2 1 3 27 27 H 1.09005 * 109.47050 * 120.00381 * 2 1 3 28 28 H 0.96991 * 120.00239 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47274 * 60.00077 * 14 13 3 30 30 H 1.09003 * 109.47288 * 179.97438 * 14 13 3 31 31 H 1.08994 * 109.47532 * 299.99784 * 14 13 3 32 32 H 1.09007 * 109.40986 * 62.49135 * 15 13 3 33 33 H 1.08998 * 109.47087 * 296.90699 * 16 15 13 34 34 H 1.09001 * 109.47486 * 56.91699 * 16 15 13 35 35 H 1.08997 * 109.56942 * 296.74086 * 17 16 15 36 36 H 1.08998 * 109.56610 * 176.38433 * 17 16 15 37 37 H 1.08999 * 117.50186 * 215.21647 * 19 18 17 38 38 H 1.08993 * 117.50811 * 0.26624 * 19 18 17 39 39 H 1.09004 * 117.50484 * 359.85029 * 20 18 17 40 40 H 1.09004 * 117.50489 * 144.88677 * 20 18 17 41 41 H 1.08997 * 109.57500 * 294.11861 * 21 18 17 42 42 H 1.09001 * 109.56732 * 173.75842 * 21 18 17 43 43 H 1.09000 * 109.46821 * 303.08043 * 22 15 13 44 44 H 1.08991 * 109.47022 * 63.09468 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6311 1.9724 0.8603 5 6 3.5450 1.4431 0.0784 6 1 4.1266 1.8962 -0.7109 7 6 4.1792 0.8706 1.1605 8 7 3.4710 0.3191 2.1216 9 14 6.0445 0.8783 1.2614 10 1 6.5346 2.2801 1.2587 11 1 6.4753 0.2052 2.5129 12 1 6.6063 0.1553 0.0923 13 7 1.6137 2.1126 -1.2358 14 6 2.1614 1.4344 -2.4182 15 6 1.9903 3.5324 -1.2216 16 6 1.3768 4.2088 0.0053 17 6 1.8318 5.6703 0.0629 18 6 1.4420 6.3627 -1.2464 19 6 0.0847 7.0633 -1.3024 20 6 1.3720 7.8891 -1.2506 21 6 1.9372 5.6681 -2.5183 22 6 1.4790 4.2067 -2.4956 23 1 -0.3633 0.4393 0.9291 24 1 -0.3633 0.5849 -0.8450 25 1 -0.3633 -1.0243 -0.0841 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9172 -0.0840 2.8827 29 1 1.8099 0.4029 -2.4408 30 1 1.8300 1.9506 -3.3192 31 1 3.2503 1.4463 -2.3720 32 1 3.0760 3.6188 -1.1767 33 1 0.2897 4.1689 -0.0634 34 1 1.7033 3.6908 0.9071 35 1 2.9136 5.7112 0.1896 36 1 1.3452 6.1714 0.8997 37 1 -0.4576 7.0353 -2.2475 38 1 -0.5329 7.0368 -0.4048 39 1 1.6012 8.4061 -0.3187 40 1 1.6764 8.4045 -2.1616 41 1 3.0257 5.7089 -2.5565 42 1 1.5205 6.1677 -3.3929 43 1 1.8779 3.6871 -3.3668 44 1 0.3900 4.1669 -2.5157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723412963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:23 Heat of formation + Delta-G solvation = 11.116081 kcal Electronic energy + Delta-G solvation = -20050.166174 eV Core-core repulsion = 17388.459810 eV Total energy + Delta-G solvation = -2661.706364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32217 -37.17775 -33.93410 -32.01981 -30.84948 -30.47607 -26.82339 -26.54854 -24.22451 -22.64367 -22.21737 -22.03309 -20.13236 -18.69853 -18.28674 -16.13993 -15.60452 -15.13471 -14.82034 -14.22929 -13.83929 -13.32514 -13.16473 -12.95286 -12.73770 -12.27710 -12.10427 -11.97514 -11.55588 -11.49079 -11.40037 -11.08661 -11.00934 -10.83103 -10.69055 -10.60013 -10.44879 -10.25359 -9.95297 -9.64807 -9.62504 -9.40582 -9.37438 -9.25111 -8.89492 -8.28541 -7.00900 -5.94224 -4.07219 3.28983 3.34329 3.36977 3.94087 4.42169 4.80729 4.95780 5.00172 5.17392 5.27305 5.30765 5.52030 5.72752 5.72823 5.82418 5.95826 5.99047 6.02660 6.09594 6.21640 6.23713 6.25920 6.35006 6.41236 6.47466 6.49943 6.51362 6.63363 6.67097 6.71740 6.76911 6.86740 7.02341 7.10974 7.17010 7.26110 7.43067 7.69390 7.81402 8.06349 8.23974 8.41732 8.55380 9.03408 9.59628 11.04317 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.007245 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.906125 B = 3863.704872 C = 4435.052646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.210 3.790 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.536 5.536 14 C 0.029 3.971 15 C 0.097 3.903 16 C -0.105 4.105 17 C -0.079 4.079 18 C -0.112 4.112 19 C -0.174 4.174 20 C -0.184 4.184 21 C -0.078 4.078 22 C -0.111 4.111 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.023 0.977 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 9.282 -6.398 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.104 3.896 4 H 0.063 0.937 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.259 5.259 14 C -0.119 4.119 15 C -0.012 4.012 16 C -0.143 4.143 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.211 4.211 20 C -0.221 4.221 21 C -0.116 4.116 22 C -0.149 4.149 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.097 9.139 -6.234 12.180 hybrid contribution 2.031 0.017 0.174 2.038 sum -3.066 9.156 -6.060 11.400 Atomic orbital electron populations 1.21725 0.98948 0.98389 1.00604 1.21627 0.92153 0.99448 1.01895 1.19333 0.92540 0.90831 0.86902 0.93714 1.21692 0.92937 1.37374 1.05764 0.92811 1.24882 0.97632 0.95179 0.95663 1.69859 1.34892 1.38079 1.09686 0.86797 0.86598 0.78157 0.77287 1.20419 1.21287 1.20448 1.62496 1.58461 1.00880 1.04100 1.22245 0.98136 0.98754 0.92806 1.21277 0.97581 0.89044 0.93266 1.21536 1.00092 0.93318 0.99346 1.21150 1.00931 0.96034 0.93566 1.21543 0.99772 0.92413 0.97447 1.22953 0.90749 1.04793 1.02637 1.22971 1.02517 0.94133 1.02514 1.21122 1.00351 0.95791 0.94341 1.21651 1.01101 0.93760 0.98348 0.94371 0.93100 0.95759 0.94923 0.89169 0.92928 0.92348 0.93896 0.95367 0.94039 0.92396 0.90409 0.91720 0.92447 0.89300 0.89137 0.89228 0.89367 0.91899 0.92554 0.92277 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.84 37.16 0.37 -2.49 16 2 C -0.11 -2.67 4.99 -26.73 -0.13 -2.81 16 3 C 0.21 5.07 1.45 -68.86 -0.10 4.97 16 4 H 0.05 1.19 5.93 -51.93 -0.31 0.88 16 5 C -0.54 -14.21 7.08 -34.44 -0.24 -14.46 16 6 H 0.05 1.44 5.81 -52.49 -0.30 1.14 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 9 Si 0.88 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.54 -11.15 3.91 -228.37 -0.89 -12.04 16 14 C 0.03 0.57 8.60 60.06 0.52 1.09 16 15 C 0.10 1.84 1.57 -67.77 -0.11 1.74 16 16 C -0.11 -1.92 5.00 -26.67 -0.13 -2.05 16 17 C -0.08 -1.22 5.67 -26.56 -0.15 -1.37 16 18 C -0.11 -1.52 1.97 -154.54 -0.31 -1.83 16 19 C -0.17 -2.11 9.93 -26.80 -0.27 -2.37 16 20 C -0.18 -2.15 9.99 -26.82 -0.27 -2.42 16 21 C -0.08 -1.08 5.67 -26.56 -0.15 -1.23 16 22 C -0.11 -1.74 5.03 -26.67 -0.13 -1.88 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.03 0.76 6.26 -51.93 -0.32 0.44 16 27 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.06 1.15 6.25 -51.93 -0.32 0.83 16 30 H 0.04 0.73 5.99 -51.93 -0.31 0.42 16 31 H 0.03 0.60 6.42 -51.93 -0.33 0.26 16 32 H 0.04 0.89 6.83 -51.93 -0.35 0.54 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.64 6.08 -51.93 -0.32 1.33 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -26.60 323.35 -9.42 -36.03 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.80 Total: 2.52 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -1.20 Total: -23.35 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.27 Total: -36.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.60 -9.42 -36.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723412963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.142 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds