Wall clock time and date at job start Mon Mar 30 2020 07:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 H 1.09000 * 109.47169 * 56.84461 * 3 2 1 5 5 C 1.50710 * 109.46658 * 176.83716 * 3 2 1 6 6 H 1.08002 * 119.99473 * 120.00557 * 5 3 2 7 7 C 1.37874 * 120.00120 * 299.72282 * 5 3 2 8 8 N 1.31515 * 120.00196 * 0.27786 * 7 5 3 9 9 Si 1.86804 * 119.99915 * 180.27727 * 7 5 3 10 10 H 1.48495 * 109.47078 * 60.00092 * 9 7 5 11 11 H 1.48495 * 109.47056 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46674 * 300.00228 * 9 7 5 13 13 N 1.46896 * 109.47164 * 296.83669 * 3 2 1 14 14 C 1.46898 * 110.99964 * 299.27484 * 13 3 2 15 15 C 1.46900 * 111.00102 * 175.32248 * 13 3 2 16 16 C 1.52942 * 109.41140 * 302.71365 * 15 13 3 17 17 C 1.53181 * 109.45072 * 176.91011 * 16 15 13 18 18 C 1.53151 * 108.88313 * 56.56536 * 17 16 15 19 19 C 1.52845 * 117.67904 * 91.49854 * 18 17 16 20 20 C 1.52803 * 117.74889 * 160.37713 * 18 17 16 21 21 C 1.53147 * 115.00401 * 306.05765 * 18 17 16 22 22 C 1.52941 * 109.41443 * 182.34981 * 15 13 3 23 23 H 1.09000 * 109.47086 * 295.30442 * 1 2 3 24 24 H 1.09002 * 109.47116 * 55.30954 * 1 2 3 25 25 H 1.09006 * 109.46977 * 175.30668 * 1 2 3 26 26 H 1.09002 * 109.47251 * 239.99645 * 2 1 3 27 27 H 1.09005 * 109.47050 * 120.00381 * 2 1 3 28 28 H 0.96991 * 120.00239 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47274 * 60.00077 * 14 13 3 30 30 H 1.09003 * 109.47288 * 179.97438 * 14 13 3 31 31 H 1.08994 * 109.47532 * 299.99784 * 14 13 3 32 32 H 1.09007 * 109.40986 * 62.49135 * 15 13 3 33 33 H 1.08998 * 109.47087 * 296.90699 * 16 15 13 34 34 H 1.09001 * 109.47486 * 56.91699 * 16 15 13 35 35 H 1.08997 * 109.56942 * 296.74086 * 17 16 15 36 36 H 1.08998 * 109.56610 * 176.38433 * 17 16 15 37 37 H 1.08999 * 117.50186 * 215.21647 * 19 18 17 38 38 H 1.08993 * 117.50811 * 0.26624 * 19 18 17 39 39 H 1.09004 * 117.50484 * 359.85029 * 20 18 17 40 40 H 1.09004 * 117.50489 * 144.88677 * 20 18 17 41 41 H 1.08997 * 109.57500 * 294.11861 * 21 18 17 42 42 H 1.09001 * 109.56732 * 173.75842 * 21 18 17 43 43 H 1.09000 * 109.46821 * 303.08043 * 22 15 13 44 44 H 1.08991 * 109.47022 * 63.09468 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6311 1.9724 0.8603 5 6 3.5450 1.4431 0.0784 6 1 4.1266 1.8962 -0.7109 7 6 4.1792 0.8706 1.1605 8 7 3.4710 0.3191 2.1216 9 14 6.0445 0.8783 1.2614 10 1 6.5346 2.2801 1.2587 11 1 6.4753 0.2052 2.5129 12 1 6.6063 0.1553 0.0923 13 7 1.6137 2.1126 -1.2358 14 6 2.1614 1.4344 -2.4182 15 6 1.9903 3.5324 -1.2216 16 6 1.3768 4.2088 0.0053 17 6 1.8318 5.6703 0.0629 18 6 1.4420 6.3627 -1.2464 19 6 0.0847 7.0633 -1.3024 20 6 1.3720 7.8891 -1.2506 21 6 1.9372 5.6681 -2.5183 22 6 1.4790 4.2067 -2.4956 23 1 -0.3633 0.4393 0.9291 24 1 -0.3633 0.5849 -0.8450 25 1 -0.3633 -1.0243 -0.0841 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9172 -0.0840 2.8827 29 1 1.8099 0.4029 -2.4408 30 1 1.8300 1.9506 -3.3192 31 1 3.2503 1.4463 -2.3720 32 1 3.0760 3.6188 -1.1767 33 1 0.2897 4.1689 -0.0634 34 1 1.7033 3.6908 0.9071 35 1 2.9136 5.7112 0.1896 36 1 1.3452 6.1714 0.8997 37 1 -0.4576 7.0353 -2.2475 38 1 -0.5329 7.0368 -0.4048 39 1 1.6012 8.4061 -0.3187 40 1 1.6764 8.4045 -2.1616 41 1 3.0257 5.7089 -2.5565 42 1 1.5205 6.1677 -3.3929 43 1 1.8779 3.6871 -3.3668 44 1 0.3900 4.1669 -2.5157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723412963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:23 Heat of formation + Delta-G solvation = -1.746153 kcal Electronic energy + Delta-G solvation = -20050.723922 eV Core-core repulsion = 17388.459810 eV Total energy + Delta-G solvation = -2662.264112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.63513 -38.68364 -35.53426 -33.88762 -32.47017 -31.83498 -28.72316 -27.94441 -25.96286 -24.28462 -23.46061 -23.15326 -21.64350 -20.52736 -19.53033 -18.12621 -17.25004 -16.55766 -16.14124 -15.76663 -15.41789 -15.01430 -14.60687 -14.47022 -14.30962 -13.70253 -13.65380 -13.36269 -13.22349 -12.99999 -12.91274 -12.60219 -12.57119 -12.43820 -12.27586 -12.12767 -11.92400 -11.82573 -11.60118 -11.50569 -11.16456 -11.07077 -10.74535 -10.64997 -10.38394 -10.30665 -8.83839 -7.99547 -6.21710 1.35424 1.36430 1.43282 2.39941 2.94584 3.17274 3.50076 3.73862 3.89414 4.04463 4.17344 4.26676 4.44458 4.50411 4.55216 4.65777 4.69983 4.70192 4.78744 4.86200 4.90730 4.92605 4.96036 5.00477 5.10681 5.11471 5.15307 5.16407 5.24822 5.32880 5.36658 5.36992 5.45395 5.46597 5.51130 5.59105 5.62760 5.70170 5.86085 6.11850 6.27937 6.45655 6.78438 7.01108 7.48162 8.93921 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.007245 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.906125 B = 3863.704872 C = 4435.052646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.218 3.782 4 H 0.016 0.984 5 C -0.544 4.544 6 H 0.044 0.956 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.533 5.533 14 C 0.033 3.967 15 C 0.098 3.902 16 C -0.098 4.098 17 C -0.073 4.073 18 C -0.134 4.134 19 C -0.167 4.167 20 C -0.169 4.169 21 C -0.073 4.073 22 C -0.101 4.101 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.006 0.994 32 H 0.010 0.990 33 H 0.060 0.940 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 10.772 -8.079 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.111 3.889 4 H 0.034 0.966 5 C -0.584 4.584 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.256 5.256 14 C -0.115 4.115 15 C -0.011 4.011 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.203 4.203 20 C -0.205 4.205 21 C -0.111 4.111 22 C -0.139 4.139 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.810 10.636 -7.926 14.481 hybrid contribution 2.240 -0.433 0.704 2.387 sum -3.570 10.203 -7.222 13.001 Atomic orbital electron populations 1.21577 0.96295 0.99868 1.00630 1.21489 0.94492 0.98601 1.00201 1.19082 0.91155 0.91117 0.87588 0.96616 1.21920 0.94340 1.36737 1.05362 0.93799 1.25540 1.01407 0.95191 0.95571 1.69984 1.36198 1.38806 1.10060 0.85918 0.82154 0.78071 0.77339 1.20252 1.20826 1.20080 1.62478 1.58117 1.01828 1.03190 1.22258 0.96723 0.99090 0.93443 1.21342 0.95820 0.88285 0.95616 1.21412 0.99998 0.94903 0.97234 1.21048 0.99984 0.94400 0.95699 1.21435 1.02007 0.93991 0.95952 1.23033 0.90315 1.03560 1.03430 1.23047 1.01582 0.92333 1.03587 1.21086 1.00069 0.94410 0.95496 1.21560 1.01179 0.94987 0.96148 0.94954 0.92224 0.93652 0.95118 0.92225 0.93051 0.92518 0.90724 0.97508 0.97239 0.92094 0.94469 0.93264 0.91425 0.87939 0.89059 0.88757 0.87741 0.92615 0.89926 0.91769 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.84 71.98 0.71 -4.40 16 2 C -0.11 -5.28 4.99 30.59 0.15 -5.12 16 3 C 0.22 10.85 1.45 44.17 0.06 10.92 16 4 H 0.02 0.89 5.93 -2.39 -0.01 0.88 16 5 C -0.54 -29.71 7.08 25.60 0.18 -29.53 16 6 H 0.04 2.44 5.81 -2.91 -0.02 2.42 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -52.50 11.31 21.45 0.24 -52.25 16 9 Si 0.94 44.24 29.54 68.60 2.03 46.27 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.53 -22.33 3.91 -876.42 -3.43 -25.77 16 14 C 0.03 1.29 8.60 127.69 1.10 2.39 16 15 C 0.10 3.75 1.57 44.88 0.07 3.82 16 16 C -0.10 -3.64 5.00 30.64 0.15 -3.49 16 17 C -0.07 -2.26 5.67 30.71 0.17 -2.08 16 18 C -0.13 -3.36 1.97 -52.20 -0.10 -3.46 16 19 C -0.17 -3.47 9.93 30.55 0.30 -3.17 16 20 C -0.17 -3.37 9.99 30.54 0.31 -3.07 16 21 C -0.07 -1.83 5.67 30.70 0.17 -1.65 16 22 C -0.10 -2.99 5.03 30.63 0.15 -2.84 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 2.29 7.56 -2.39 -0.02 2.27 16 25 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.03 1.45 6.26 -2.39 -0.01 1.44 16 27 H 0.06 3.26 6.00 -2.38 -0.01 3.24 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 2.20 6.25 -2.39 -0.01 2.18 16 30 H 0.07 2.40 5.99 -2.39 -0.01 2.39 16 31 H 0.01 0.27 6.42 -2.39 -0.02 0.26 16 32 H 0.01 0.43 6.83 -2.38 -0.02 0.41 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.04 1.66 6.08 -2.39 -0.01 1.65 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 43 H 0.06 1.83 6.12 -2.39 -0.01 1.81 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -58.49 323.35 3.67 -54.82 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.95 Total: 16.93 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.88 Total: -39.99 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -3.19 Total: -78.02 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -58.49 3.67 -54.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723412963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.069 kcal (2) G-P(sol) polarization free energy of solvation -58.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds