Wall clock time and date at job start Mon Mar 30 2020 07:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.08992 * 109.47401 * 303.10415 * 3 2 1 5 5 C 1.50698 * 109.46993 * 183.10779 * 3 2 1 6 6 H 1.07998 * 120.00082 * 242.16615 * 5 3 2 7 7 C 1.37883 * 120.00108 * 62.15680 * 5 3 2 8 8 N 1.31509 * 120.00081 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99877 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46830 * 60.00874 * 9 7 5 11 11 H 1.48502 * 109.46698 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47191 * 300.00341 * 9 7 5 13 13 N 1.46895 * 109.46867 * 63.10837 * 3 2 1 14 14 C 1.46907 * 110.99844 * 168.10388 * 13 3 2 15 15 C 1.46899 * 111.00447 * 44.15169 * 13 3 2 16 16 H 1.09003 * 109.47026 * 311.02296 * 15 13 3 17 17 C 1.52936 * 109.47633 * 71.02561 * 15 13 3 18 18 C 1.52951 * 109.82575 * 182.98240 * 17 15 13 19 19 C 1.53182 * 109.44804 * 297.01855 * 18 17 15 20 20 C 1.53159 * 108.97864 * 56.50950 * 19 18 17 21 21 C 1.52812 * 117.74335 * 160.43322 * 20 19 18 22 22 C 1.52841 * 117.67521 * 91.55338 * 20 19 18 23 23 C 1.53179 * 114.98843 * 306.24934 * 20 19 18 24 24 H 1.09004 * 109.47010 * 185.22991 * 1 2 3 25 25 H 1.08999 * 109.46633 * 305.22295 * 1 2 3 26 26 H 1.08992 * 109.47421 * 65.22358 * 1 2 3 27 27 H 1.08999 * 109.46677 * 240.00584 * 2 1 3 28 28 H 1.08992 * 109.47268 * 120.00551 * 2 1 3 29 29 H 0.96991 * 120.00255 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46575 * 296.62404 * 14 13 3 31 31 H 1.08999 * 109.47302 * 56.62454 * 14 13 3 32 32 H 1.08999 * 109.47234 * 176.62544 * 14 13 3 33 33 H 1.09004 * 109.41119 * 62.87564 * 17 15 13 34 34 H 1.08997 * 109.41636 * 303.09308 * 17 15 13 35 35 H 1.08991 * 109.47529 * 177.01957 * 18 17 15 36 36 H 1.09000 * 109.47734 * 57.00848 * 18 17 15 37 37 H 1.08997 * 109.56760 * 176.38967 * 19 18 17 38 38 H 1.08999 * 109.56765 * 296.63315 * 19 18 17 39 39 H 1.08996 * 117.50449 * 359.84649 * 21 20 19 40 40 H 1.08995 * 117.49552 * 144.88755 * 21 20 19 41 41 H 1.09004 * 117.50042 * 215.21839 * 22 20 19 42 42 H 1.08998 * 117.50980 * 0.23491 * 22 20 19 43 43 H 1.08991 * 109.47155 * 293.92548 * 23 20 19 44 44 H 1.08997 * 109.67420 * 173.67950 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6320 1.9722 -0.8608 5 6 3.5450 1.4432 -0.0770 6 1 4.1268 1.8652 0.7291 7 6 4.1793 0.9050 -1.1766 8 7 3.4709 0.3915 -2.1585 9 14 6.0449 0.9066 -1.2724 10 1 6.5999 0.1406 -0.1276 11 1 6.4756 0.2758 -2.5459 12 1 6.5421 2.3049 -1.2201 13 7 1.6126 2.1129 1.2352 14 6 2.3096 3.3947 1.4068 15 6 1.8135 1.2440 2.4025 16 1 1.3947 0.2586 2.1984 17 6 3.3101 1.1125 2.6886 18 6 3.5324 0.1504 3.8567 19 6 2.8871 0.7258 5.1212 20 6 1.4027 0.9863 4.8486 21 6 0.4711 1.1198 6.0526 22 6 0.4139 -0.1326 5.1750 23 6 1.1130 1.8545 3.6203 24 1 -0.3633 -1.0234 0.0937 25 1 -0.3632 0.5927 0.8395 26 1 -0.3634 0.4306 -0.9330 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9171 0.0133 -2.9321 30 1 3.3789 3.2146 1.5180 31 1 2.1358 4.0226 0.5330 32 1 1.9314 3.8977 2.2968 33 1 3.7178 2.0910 2.9427 34 1 3.8162 0.7295 1.8025 35 1 4.6018 0.0198 4.0215 36 1 3.0801 -0.8138 3.6245 37 1 2.9885 0.0129 5.9395 38 1 3.3788 1.6611 5.3888 39 1 0.9125 1.0199 7.0441 40 1 -0.3542 1.8275 5.9742 41 1 -0.4490 -0.2488 4.5192 42 1 0.8179 -1.0566 5.5887 43 1 1.4900 2.8628 3.7909 44 1 0.0383 1.8917 3.4425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723421964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:56 Heat of formation + Delta-G solvation = 24.190566 kcal Electronic energy + Delta-G solvation = -20469.779399 eV Core-core repulsion = 17808.639987 eV Total energy + Delta-G solvation = -2661.139411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55484 -37.20895 -33.64564 -32.44596 -31.28245 -29.35808 -27.11831 -26.28610 -24.98478 -22.52144 -22.31055 -21.59048 -20.58028 -18.52378 -17.88841 -16.56257 -15.50910 -14.93168 -14.82526 -14.17021 -13.75016 -13.60648 -13.14675 -12.96901 -12.63188 -12.50802 -11.98065 -11.71124 -11.50577 -11.38277 -11.29617 -11.14796 -10.89604 -10.85382 -10.64110 -10.52784 -10.41477 -10.26598 -10.10285 -9.81224 -9.62572 -9.47139 -9.36302 -9.01042 -8.63674 -8.28833 -7.00783 -5.96777 -4.07432 3.27598 3.33255 3.35699 3.97795 4.39917 4.81481 5.00220 5.08318 5.22306 5.27681 5.45232 5.61845 5.73127 5.76746 5.82107 5.93381 6.05037 6.07598 6.20251 6.21147 6.27781 6.32822 6.36275 6.40174 6.44933 6.48522 6.57278 6.63443 6.65329 6.69215 6.89236 6.91252 7.03217 7.10287 7.21821 7.34443 7.42311 7.69706 7.78345 8.04091 8.20426 8.42334 8.52405 9.01130 9.56940 11.02368 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.007725 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.015296 B = 3623.523251 C = 4065.694975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.536 5.536 14 C 0.033 3.967 15 C 0.093 3.907 16 H 0.085 0.915 17 C -0.171 4.171 18 C -0.113 4.113 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.183 4.183 22 C -0.175 4.175 23 C -0.073 4.073 24 H 0.025 0.975 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 0.207 11.765 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.107 3.893 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.016 4.016 16 H 0.103 0.897 17 C -0.209 4.209 18 C -0.151 4.151 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.220 4.220 22 C -0.212 4.212 23 C -0.111 4.111 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.883 0.227 11.500 12.140 hybrid contribution 1.957 -0.212 -0.012 1.969 sum -1.925 0.015 11.488 11.648 Atomic orbital electron populations 1.21770 0.98895 0.98533 1.00776 1.21740 0.92245 0.99629 1.01960 1.19251 0.92753 0.90559 0.86715 0.94296 1.21991 0.92961 1.39212 1.04257 0.91004 1.24936 0.97607 0.95286 0.95643 1.69882 1.34993 1.39309 1.08054 0.86828 0.86611 0.78265 0.77353 1.20295 1.21323 1.20375 1.62649 1.56071 1.03857 1.03273 1.22202 0.97684 0.92362 0.99325 1.21577 0.93253 0.97443 0.89335 0.89732 1.22827 0.99441 0.98718 0.99939 1.21499 0.99048 0.99512 0.95022 1.21149 0.92670 1.00158 0.97682 1.21517 0.92341 1.00958 0.96310 1.22952 1.02706 1.01097 0.95225 1.22970 1.02030 0.92824 1.03397 1.21226 1.00160 0.97549 0.92125 0.95599 0.93152 0.94123 0.89467 0.94229 0.92917 0.94438 0.92950 0.94256 0.93220 0.86644 0.93008 0.92449 0.92913 0.92165 0.89469 0.89211 0.88955 0.89389 0.92177 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.53 37.16 0.35 -2.51 16 2 C -0.12 -2.70 4.71 -26.73 -0.13 -2.83 16 3 C 0.21 5.11 2.01 -68.87 -0.14 4.97 16 4 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.55 -13.85 5.60 -34.44 -0.19 -14.05 16 6 H 0.07 1.80 4.04 -52.49 -0.21 1.59 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -24.44 11.46 55.43 0.64 -23.80 16 9 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.54 -11.08 4.23 -228.22 -0.96 -12.04 16 14 C 0.03 0.65 8.24 60.07 0.50 1.14 16 15 C 0.09 1.72 1.37 -67.65 -0.09 1.62 16 16 H 0.08 1.68 4.96 -51.93 -0.26 1.42 16 17 C -0.17 -3.19 3.52 -26.79 -0.09 -3.29 16 18 C -0.11 -1.79 5.93 -26.66 -0.16 -1.95 16 19 C -0.08 -1.10 5.67 -26.56 -0.15 -1.25 16 20 C -0.11 -1.55 1.98 -154.51 -0.31 -1.86 16 21 C -0.18 -2.20 10.00 -26.81 -0.27 -2.46 16 22 C -0.18 -2.25 9.93 -26.79 -0.27 -2.51 16 23 C -0.07 -1.16 4.97 -26.55 -0.13 -1.29 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 7.04 -51.93 -0.37 0.61 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 2.26 6.17 -51.93 -0.32 1.94 16 28 H 0.04 0.89 5.86 -51.93 -0.30 0.59 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.04 0.77 4.54 -51.93 -0.24 0.54 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.68 6.42 -51.93 -0.33 0.35 16 33 H 0.05 0.93 6.51 -51.93 -0.34 0.59 16 34 H 0.12 2.55 4.59 -51.93 -0.24 2.32 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.97 6.44 -51.93 -0.33 0.63 16 44 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -25.71 315.94 -9.33 -35.04 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.57 Total: 4.95 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.17 Total: -24.56 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.33 Total: -35.85 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.71 -9.33 -35.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.227 kcal (2) G-P(sol) polarization free energy of solvation -25.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds