Wall clock time and date at job start Mon Mar 30 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46962 * 2 1 4 4 H 1.08992 * 109.47401 * 303.10415 * 3 2 1 5 5 C 1.50698 * 109.46993 * 183.10779 * 3 2 1 6 6 H 1.07998 * 120.00082 * 242.16615 * 5 3 2 7 7 C 1.37883 * 120.00108 * 62.15680 * 5 3 2 8 8 N 1.31509 * 120.00081 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99877 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46830 * 60.00874 * 9 7 5 11 11 H 1.48502 * 109.46698 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47191 * 300.00341 * 9 7 5 13 13 N 1.46895 * 109.46867 * 63.10837 * 3 2 1 14 14 C 1.46907 * 110.99844 * 168.10388 * 13 3 2 15 15 C 1.46899 * 111.00447 * 44.15169 * 13 3 2 16 16 H 1.09003 * 109.47026 * 311.02296 * 15 13 3 17 17 C 1.52936 * 109.47633 * 71.02561 * 15 13 3 18 18 C 1.52951 * 109.82575 * 182.98240 * 17 15 13 19 19 C 1.53182 * 109.44804 * 297.01855 * 18 17 15 20 20 C 1.53159 * 108.97864 * 56.50950 * 19 18 17 21 21 C 1.52812 * 117.74335 * 160.43322 * 20 19 18 22 22 C 1.52841 * 117.67521 * 91.55338 * 20 19 18 23 23 C 1.53179 * 114.98843 * 306.24934 * 20 19 18 24 24 H 1.09004 * 109.47010 * 185.22991 * 1 2 3 25 25 H 1.08999 * 109.46633 * 305.22295 * 1 2 3 26 26 H 1.08992 * 109.47421 * 65.22358 * 1 2 3 27 27 H 1.08999 * 109.46677 * 240.00584 * 2 1 3 28 28 H 1.08992 * 109.47268 * 120.00551 * 2 1 3 29 29 H 0.96991 * 120.00255 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46575 * 296.62404 * 14 13 3 31 31 H 1.08999 * 109.47302 * 56.62454 * 14 13 3 32 32 H 1.08999 * 109.47234 * 176.62544 * 14 13 3 33 33 H 1.09004 * 109.41119 * 62.87564 * 17 15 13 34 34 H 1.08997 * 109.41636 * 303.09308 * 17 15 13 35 35 H 1.08991 * 109.47529 * 177.01957 * 18 17 15 36 36 H 1.09000 * 109.47734 * 57.00848 * 18 17 15 37 37 H 1.08997 * 109.56760 * 176.38967 * 19 18 17 38 38 H 1.08999 * 109.56765 * 296.63315 * 19 18 17 39 39 H 1.08996 * 117.50449 * 359.84649 * 21 20 19 40 40 H 1.08995 * 117.49552 * 144.88755 * 21 20 19 41 41 H 1.09004 * 117.50042 * 215.21839 * 22 20 19 42 42 H 1.08998 * 117.50980 * 0.23491 * 22 20 19 43 43 H 1.08991 * 109.47155 * 293.92548 * 23 20 19 44 44 H 1.08997 * 109.67420 * 173.67950 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6320 1.9722 -0.8608 5 6 3.5450 1.4432 -0.0770 6 1 4.1268 1.8652 0.7291 7 6 4.1793 0.9050 -1.1766 8 7 3.4709 0.3915 -2.1585 9 14 6.0449 0.9066 -1.2724 10 1 6.5999 0.1406 -0.1276 11 1 6.4756 0.2758 -2.5459 12 1 6.5421 2.3049 -1.2201 13 7 1.6126 2.1129 1.2352 14 6 2.3096 3.3947 1.4068 15 6 1.8135 1.2440 2.4025 16 1 1.3947 0.2586 2.1984 17 6 3.3101 1.1125 2.6886 18 6 3.5324 0.1504 3.8567 19 6 2.8871 0.7258 5.1212 20 6 1.4027 0.9863 4.8486 21 6 0.4711 1.1198 6.0526 22 6 0.4139 -0.1326 5.1750 23 6 1.1130 1.8545 3.6203 24 1 -0.3633 -1.0234 0.0937 25 1 -0.3632 0.5927 0.8395 26 1 -0.3634 0.4306 -0.9330 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.9171 0.0133 -2.9321 30 1 3.3789 3.2146 1.5180 31 1 2.1358 4.0226 0.5330 32 1 1.9314 3.8977 2.2968 33 1 3.7178 2.0910 2.9427 34 1 3.8162 0.7295 1.8025 35 1 4.6018 0.0198 4.0215 36 1 3.0801 -0.8138 3.6245 37 1 2.9885 0.0129 5.9395 38 1 3.3788 1.6611 5.3888 39 1 0.9125 1.0199 7.0441 40 1 -0.3542 1.8275 5.9742 41 1 -0.4490 -0.2488 4.5192 42 1 0.8179 -1.0566 5.5887 43 1 1.4900 2.8628 3.7909 44 1 0.0383 1.8917 3.4425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723421964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:55 Heat of formation + Delta-G solvation = 11.754157 kcal Electronic energy + Delta-G solvation = -20470.318682 eV Core-core repulsion = 17808.639987 eV Total energy + Delta-G solvation = -2661.678695 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94787 -38.62285 -35.20119 -34.11940 -33.06945 -30.81549 -28.64590 -27.86532 -26.69935 -24.22773 -23.31330 -23.00323 -22.14841 -20.00084 -19.30131 -18.49421 -17.15576 -16.28354 -16.25469 -15.77256 -15.21610 -15.11641 -14.66218 -14.57072 -14.07789 -13.93813 -13.43752 -13.30697 -13.18082 -13.01704 -12.72762 -12.68369 -12.45312 -12.33796 -12.25134 -12.11006 -11.93778 -11.81584 -11.56919 -11.38256 -11.12609 -11.00872 -10.88521 -10.56295 -10.33372 -10.08705 -8.77776 -7.96528 -6.14876 1.38707 1.40182 1.45962 2.42794 2.95908 3.20696 3.50847 3.91833 3.93915 4.08743 4.18630 4.37172 4.39145 4.54781 4.59810 4.63290 4.71274 4.74454 4.77680 4.87451 4.89523 4.92488 4.99263 5.07403 5.11927 5.15025 5.20050 5.22601 5.26736 5.32681 5.37363 5.38353 5.42913 5.51122 5.59683 5.64485 5.70025 5.81584 5.87083 6.11170 6.30732 6.49213 6.80679 7.03773 7.52116 8.98172 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.007725 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.015296 B = 3623.523251 C = 4065.694975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C 0.220 3.780 4 H -0.002 1.002 5 C -0.542 4.542 6 H 0.075 0.925 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.538 5.538 14 C 0.037 3.963 15 C 0.097 3.903 16 H 0.071 0.929 17 C -0.164 4.164 18 C -0.110 4.110 19 C -0.072 4.072 20 C -0.130 4.130 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.064 4.064 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 0.236 14.460 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.016 0.984 5 C -0.581 4.581 6 H 0.092 0.908 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.764 3.236 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.260 5.260 14 C -0.111 4.111 15 C -0.012 4.012 16 H 0.089 0.911 17 C -0.203 4.203 18 C -0.148 4.148 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.199 4.199 22 C -0.213 4.213 23 C -0.101 4.101 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.099 0.263 14.216 14.797 hybrid contribution 1.993 -0.199 -0.827 2.167 sum -2.106 0.064 13.388 13.553 Atomic orbital electron populations 1.21635 0.96520 0.99990 1.00646 1.21553 0.94300 0.98541 1.00333 1.18993 0.91894 0.90838 0.86989 0.98443 1.22275 0.93931 1.37975 1.03911 0.90758 1.25599 1.01240 0.95539 0.95660 1.70020 1.36259 1.40605 1.08555 0.85942 0.82340 0.78176 0.77189 1.19762 1.21459 1.20119 1.62579 1.56014 1.04389 1.03011 1.22182 0.96943 0.91867 1.00111 1.21566 0.93525 0.96580 0.89492 0.91086 1.22613 0.98958 0.99090 0.99617 1.21448 0.99750 0.98523 0.95052 1.21087 0.92324 1.00681 0.96834 1.21444 0.92889 1.02020 0.96687 1.23019 1.01634 1.00203 0.95042 1.23034 1.01338 0.93388 1.03584 1.21091 0.99618 0.97749 0.91672 0.93472 0.92341 0.94923 0.92650 0.94125 0.93266 0.95666 0.94026 0.91436 0.93431 0.90416 0.92452 0.92959 0.90859 0.91823 0.87729 0.88579 0.89353 0.88433 0.92195 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.53 71.98 0.69 -4.53 16 2 C -0.11 -5.12 4.71 30.60 0.14 -4.98 16 3 C 0.22 10.85 2.01 44.17 0.09 10.93 16 4 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 5 C -0.54 -28.23 5.60 25.60 0.14 -28.09 16 6 H 0.07 3.78 4.04 -2.91 -0.01 3.77 16 7 C 0.02 1.03 5.30 84.66 0.45 1.47 16 8 N -0.91 -52.30 11.46 21.45 0.25 -52.06 16 9 Si 0.94 43.20 29.54 68.60 2.03 45.22 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.54 -22.26 4.23 -875.96 -3.70 -25.96 16 14 C 0.04 1.46 8.24 127.69 1.05 2.51 16 15 C 0.10 3.51 1.37 44.95 0.06 3.57 16 16 H 0.07 2.78 4.96 -2.39 -0.01 2.76 16 17 C -0.16 -6.04 3.52 30.56 0.11 -5.93 16 18 C -0.11 -3.30 5.93 30.64 0.18 -3.12 16 19 C -0.07 -1.77 5.67 30.71 0.17 -1.60 16 20 C -0.13 -3.23 1.98 -52.18 -0.10 -3.34 16 21 C -0.16 -3.24 10.00 30.54 0.31 -2.93 16 22 C -0.18 -3.94 9.93 30.55 0.30 -3.64 16 23 C -0.06 -1.89 4.97 30.71 0.15 -1.73 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 2.22 7.04 -2.39 -0.02 2.20 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 2.97 6.17 -2.39 -0.01 2.96 16 28 H 0.04 1.87 5.86 -2.39 -0.01 1.85 16 29 H 0.26 14.25 8.31 -92.72 -0.77 13.48 16 30 H 0.02 1.04 4.54 -2.39 -0.01 1.02 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.23 6.42 -2.39 -0.02 2.21 16 33 H 0.05 1.74 6.51 -2.39 -0.02 1.72 16 34 H 0.08 3.47 4.59 -2.39 -0.01 3.46 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.77 6.44 -2.39 -0.02 1.76 16 44 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -56.15 315.94 3.28 -52.87 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.96 Total: 21.33 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.75 Total: -41.41 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.46 Total: -78.02 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -56.15 3.28 -52.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.624 kcal (2) G-P(sol) polarization free energy of solvation -56.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds