Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.08997 * 109.46994 * 53.79323 * 3 2 1 5 5 C 1.50704 * 109.46943 * 173.79443 * 3 2 1 6 6 H 1.07998 * 119.99711 * 114.36418 * 5 3 2 7 7 C 1.37875 * 120.00059 * 294.36402 * 5 3 2 8 8 N 1.31519 * 119.99941 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99995 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47499 * 89.99775 * 9 7 5 11 11 H 1.48503 * 109.47125 * 209.99643 * 9 7 5 12 12 H 1.48497 * 109.47136 * 329.99385 * 9 7 5 13 13 N 1.46903 * 109.47329 * 293.79339 * 3 2 1 14 14 C 1.46903 * 110.99756 * 80.09758 * 13 3 2 15 15 C 1.46894 * 111.00140 * 204.05667 * 13 3 2 16 16 H 1.09000 * 109.47786 * 61.65119 * 15 13 3 17 17 C 1.52951 * 109.47280 * 301.64532 * 15 13 3 18 18 C 1.52944 * 109.82319 * 177.02404 * 17 15 13 19 19 C 1.53177 * 109.45019 * 62.97891 * 18 17 15 20 20 C 1.53144 * 108.88769 * 303.43537 * 19 18 17 21 21 C 1.52848 * 117.68192 * 268.50696 * 20 19 18 22 22 C 1.52810 * 117.75245 * 199.62595 * 20 19 18 23 23 C 1.53154 * 115.00916 * 53.93578 * 20 19 18 24 24 H 1.09000 * 109.46786 * 322.82511 * 1 2 3 25 25 H 1.08993 * 109.46861 * 82.81971 * 1 2 3 26 26 H 1.08994 * 109.46952 * 202.81998 * 1 2 3 27 27 H 1.08999 * 109.46956 * 240.00215 * 2 1 3 28 28 H 1.09005 * 109.47088 * 120.00284 * 2 1 3 29 29 H 0.97001 * 119.99743 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46702 * 64.76264 * 14 13 3 31 31 H 1.08998 * 109.46972 * 184.75869 * 14 13 3 32 32 H 1.08994 * 109.47418 * 304.76258 * 14 13 3 33 33 H 1.09000 * 109.41350 * 297.13502 * 17 15 13 34 34 H 1.09001 * 109.40866 * 56.91781 * 17 15 13 35 35 H 1.09000 * 109.47496 * 182.97598 * 18 17 15 36 36 H 1.09000 * 109.47053 * 302.99321 * 18 17 15 37 37 H 1.09001 * 109.56353 * 63.26164 * 19 18 17 38 38 H 1.09004 * 109.56582 * 183.61126 * 19 18 17 39 39 H 1.08997 * 117.50214 * 359.72648 * 21 20 19 40 40 H 1.09004 * 117.50028 * 144.78295 * 21 20 19 41 41 H 1.09000 * 117.49747 * 215.11525 * 22 20 19 42 42 H 1.08998 * 117.50234 * 0.11832 * 22 20 19 43 43 H 1.09000 * 109.57410 * 186.24060 * 23 20 19 44 44 H 1.09010 * 109.56671 * 65.88140 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5889 1.9874 0.8292 5 6 3.5392 1.4452 0.1536 6 1 4.1639 1.8010 -0.6523 7 6 4.1133 0.9934 1.3229 8 7 3.3524 0.5605 2.3045 9 14 5.9715 0.9974 1.5135 10 1 6.4070 2.2937 2.0925 11 1 6.3789 -0.1095 2.4159 12 1 6.6059 0.8110 0.1839 13 7 1.6765 2.0905 -1.2673 14 6 0.2767 2.5357 -1.2483 15 6 2.5808 3.2091 -1.5650 16 1 3.5990 2.8349 -1.6713 17 6 2.5278 4.2254 -0.4232 18 6 3.5213 5.3572 -0.6896 19 6 3.1166 6.1013 -1.9659 20 6 3.0433 5.0993 -3.1218 21 6 4.3039 4.8888 -3.9601 22 6 3.1121 5.6494 -4.5458 23 6 2.1459 3.8842 -2.8694 24 1 -0.3633 0.8189 0.6210 25 1 -0.3633 0.1284 -1.0196 26 1 -0.3633 -0.9472 0.3985 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7563 0.2423 3.1270 30 1 0.1525 3.3114 -0.4927 31 1 0.0092 2.9352 -2.2265 32 1 -0.3701 1.6909 -1.0115 33 1 1.5209 4.6367 -0.3508 34 1 2.7843 3.7312 0.5138 35 1 3.5171 6.0501 0.1518 36 1 4.5213 4.9413 -0.8131 37 1 2.1413 6.5665 -1.8235 38 1 3.8586 6.8669 -2.1929 39 1 5.1883 5.4673 -3.6932 40 1 4.4951 3.8845 -4.3382 41 1 2.5193 5.1454 -5.3092 42 1 3.2120 6.7283 -4.6643 43 1 2.2441 3.1798 -3.6954 44 1 1.1084 4.2078 -2.7847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723421965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = 23.615146 kcal Electronic energy + Delta-G solvation = -20273.595808 eV Core-core repulsion = 17612.431444 eV Total energy + Delta-G solvation = -2661.164364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.45129 -37.10507 -33.88091 -32.54053 -31.35630 -28.58792 -28.05518 -26.62334 -24.21549 -22.91977 -22.29488 -21.38317 -20.35633 -18.81443 -18.12686 -16.21518 -15.51168 -14.97571 -14.70175 -14.21181 -13.75132 -13.61710 -13.21276 -13.03462 -12.72079 -12.36177 -12.31367 -11.82229 -11.69987 -11.44168 -11.28946 -11.11330 -10.91099 -10.78871 -10.67760 -10.52431 -10.33372 -10.27187 -10.02413 -9.83566 -9.57242 -9.54568 -9.38278 -8.84845 -8.56555 -8.38350 -6.96720 -6.00472 -4.03152 3.30265 3.37703 3.41099 3.99671 4.43026 4.81936 5.01812 5.09320 5.22469 5.32152 5.44212 5.61293 5.73039 5.78747 5.82303 5.92776 6.02954 6.08963 6.11184 6.20677 6.25951 6.28585 6.30046 6.31079 6.33609 6.41468 6.49095 6.50019 6.56250 6.71306 6.73736 6.86996 7.00157 7.05656 7.20368 7.30658 7.44515 7.63553 7.83611 7.90288 8.21295 8.39586 8.71148 9.05774 9.61530 11.07332 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018509 B = 0.008738 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.421274 B = 3203.693479 C = 4150.904970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.007 0.993 5 C -0.509 4.509 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.534 5.534 14 C -0.001 4.001 15 C 0.102 3.898 16 H 0.093 0.907 17 C -0.145 4.145 18 C -0.110 4.110 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.174 4.174 22 C -0.183 4.183 23 C -0.078 4.078 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 7.867 -8.193 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.548 4.548 6 H 0.085 0.915 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.150 4.150 15 C -0.006 4.006 16 H 0.111 0.889 17 C -0.184 4.184 18 C -0.148 4.148 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.211 4.211 22 C -0.220 4.220 23 C -0.116 4.116 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.155 7.409 -8.371 11.384 hybrid contribution 0.922 0.631 0.859 1.409 sum -1.234 8.040 -7.511 11.072 Atomic orbital electron populations 1.22086 0.99763 0.99254 0.99369 1.21507 0.91406 0.99835 1.01589 1.19272 0.95004 0.90432 0.84114 0.97488 1.21379 0.91255 1.41911 1.00215 0.91533 1.24923 0.97692 0.95378 0.95986 1.69937 1.34585 1.43036 1.05356 0.86661 0.86193 0.77553 0.78048 1.20814 1.21358 1.19852 1.62305 1.00391 1.25870 1.37146 1.22922 0.92952 1.00024 0.99065 1.21540 0.98721 0.89051 0.91312 0.88940 1.22145 0.97507 0.96466 1.02308 1.21426 1.00137 0.97457 0.95777 1.21146 1.00624 0.95848 0.93999 1.21497 0.99801 0.98675 0.91201 1.22978 0.92236 1.01490 1.04409 1.22955 1.02748 0.99451 0.96866 1.21347 0.97586 0.93790 0.98868 0.93879 0.93577 0.95141 0.94066 0.89982 0.93077 0.96871 0.93326 0.90267 0.93842 0.89325 0.92967 0.91993 0.92190 0.92744 0.89328 0.88856 0.89235 0.89469 0.91993 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.25 37.16 0.31 -2.62 16 2 C -0.10 -2.47 5.49 -26.73 -0.15 -2.62 16 3 C 0.22 5.28 0.93 -68.86 -0.06 5.22 16 4 H 0.01 0.20 7.28 -51.93 -0.38 -0.18 16 5 C -0.51 -13.31 6.53 -34.44 -0.22 -13.53 16 6 H 0.07 1.75 5.37 -52.49 -0.28 1.46 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -24.93 11.74 55.43 0.65 -24.28 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.53 -11.22 4.65 -228.22 -1.06 -12.28 16 14 C 0.00 -0.02 8.21 60.07 0.49 0.47 16 15 C 0.10 1.98 1.80 -67.65 -0.12 1.86 16 16 H 0.09 2.02 5.67 -51.93 -0.29 1.73 16 17 C -0.15 -2.77 4.35 -26.79 -0.12 -2.89 16 18 C -0.11 -1.79 5.93 -26.67 -0.16 -1.95 16 19 C -0.08 -1.11 5.67 -26.56 -0.15 -1.26 16 20 C -0.11 -1.60 1.97 -154.53 -0.31 -1.90 16 21 C -0.17 -2.33 9.93 -26.79 -0.27 -2.60 16 22 C -0.18 -2.25 9.99 -26.81 -0.27 -2.52 16 23 C -0.08 -1.27 4.64 -26.56 -0.12 -1.39 16 24 H 0.04 0.85 7.12 -51.93 -0.37 0.48 16 25 H 0.05 0.84 6.54 -51.93 -0.34 0.50 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 2.16 6.42 -51.93 -0.33 1.83 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.01 0.24 6.48 -51.93 -0.34 -0.09 16 31 H 0.05 0.80 6.19 -51.93 -0.32 0.48 16 32 H 0.08 1.43 3.56 -51.93 -0.19 1.24 16 33 H 0.04 0.81 6.66 -51.93 -0.35 0.46 16 34 H 0.09 2.02 5.88 -51.93 -0.31 1.72 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.06 0.97 6.17 -51.92 -0.32 0.65 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -26.57 317.34 -9.48 -36.05 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.59 Total: 3.90 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -1.24 Total: -24.17 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.41 Total: -36.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.57 -9.48 -36.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.669 kcal (2) G-P(sol) polarization free energy of solvation -26.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds