Wall clock time and date at job start Mon Mar 30 2020 07:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47234 * 2 1 4 4 H 1.08997 * 109.46994 * 53.79323 * 3 2 1 5 5 C 1.50704 * 109.46943 * 173.79443 * 3 2 1 6 6 H 1.07998 * 119.99711 * 114.36418 * 5 3 2 7 7 C 1.37875 * 120.00059 * 294.36402 * 5 3 2 8 8 N 1.31519 * 119.99941 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99995 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47499 * 89.99775 * 9 7 5 11 11 H 1.48503 * 109.47125 * 209.99643 * 9 7 5 12 12 H 1.48497 * 109.47136 * 329.99385 * 9 7 5 13 13 N 1.46903 * 109.47329 * 293.79339 * 3 2 1 14 14 C 1.46903 * 110.99756 * 80.09758 * 13 3 2 15 15 C 1.46894 * 111.00140 * 204.05667 * 13 3 2 16 16 H 1.09000 * 109.47786 * 61.65119 * 15 13 3 17 17 C 1.52951 * 109.47280 * 301.64532 * 15 13 3 18 18 C 1.52944 * 109.82319 * 177.02404 * 17 15 13 19 19 C 1.53177 * 109.45019 * 62.97891 * 18 17 15 20 20 C 1.53144 * 108.88769 * 303.43537 * 19 18 17 21 21 C 1.52848 * 117.68192 * 268.50696 * 20 19 18 22 22 C 1.52810 * 117.75245 * 199.62595 * 20 19 18 23 23 C 1.53154 * 115.00916 * 53.93578 * 20 19 18 24 24 H 1.09000 * 109.46786 * 322.82511 * 1 2 3 25 25 H 1.08993 * 109.46861 * 82.81971 * 1 2 3 26 26 H 1.08994 * 109.46952 * 202.81998 * 1 2 3 27 27 H 1.08999 * 109.46956 * 240.00215 * 2 1 3 28 28 H 1.09005 * 109.47088 * 120.00284 * 2 1 3 29 29 H 0.97001 * 119.99743 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46702 * 64.76264 * 14 13 3 31 31 H 1.08998 * 109.46972 * 184.75869 * 14 13 3 32 32 H 1.08994 * 109.47418 * 304.76258 * 14 13 3 33 33 H 1.09000 * 109.41350 * 297.13502 * 17 15 13 34 34 H 1.09001 * 109.40866 * 56.91781 * 17 15 13 35 35 H 1.09000 * 109.47496 * 182.97598 * 18 17 15 36 36 H 1.09000 * 109.47053 * 302.99321 * 18 17 15 37 37 H 1.09001 * 109.56353 * 63.26164 * 19 18 17 38 38 H 1.09004 * 109.56582 * 183.61126 * 19 18 17 39 39 H 1.08997 * 117.50214 * 359.72648 * 21 20 19 40 40 H 1.09004 * 117.50028 * 144.78295 * 21 20 19 41 41 H 1.09000 * 117.49747 * 215.11525 * 22 20 19 42 42 H 1.08998 * 117.50234 * 0.11832 * 22 20 19 43 43 H 1.09000 * 109.57410 * 186.24060 * 23 20 19 44 44 H 1.09010 * 109.56671 * 65.88140 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5889 1.9874 0.8292 5 6 3.5392 1.4452 0.1536 6 1 4.1639 1.8010 -0.6523 7 6 4.1133 0.9934 1.3229 8 7 3.3524 0.5605 2.3045 9 14 5.9715 0.9974 1.5135 10 1 6.4070 2.2937 2.0925 11 1 6.3789 -0.1095 2.4159 12 1 6.6059 0.8110 0.1839 13 7 1.6765 2.0905 -1.2673 14 6 0.2767 2.5357 -1.2483 15 6 2.5808 3.2091 -1.5650 16 1 3.5990 2.8349 -1.6713 17 6 2.5278 4.2254 -0.4232 18 6 3.5213 5.3572 -0.6896 19 6 3.1166 6.1013 -1.9659 20 6 3.0433 5.0993 -3.1218 21 6 4.3039 4.8888 -3.9601 22 6 3.1121 5.6494 -4.5458 23 6 2.1459 3.8842 -2.8694 24 1 -0.3633 0.8189 0.6210 25 1 -0.3633 0.1284 -1.0196 26 1 -0.3633 -0.9472 0.3985 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.7563 0.2423 3.1270 30 1 0.1525 3.3114 -0.4927 31 1 0.0092 2.9352 -2.2265 32 1 -0.3701 1.6909 -1.0115 33 1 1.5209 4.6367 -0.3508 34 1 2.7843 3.7312 0.5138 35 1 3.5171 6.0501 0.1518 36 1 4.5213 4.9413 -0.8131 37 1 2.1413 6.5665 -1.8235 38 1 3.8586 6.8669 -2.1929 39 1 5.1883 5.4673 -3.6932 40 1 4.4951 3.8845 -4.3382 41 1 2.5193 5.1454 -5.3092 42 1 3.2120 6.7283 -4.6643 43 1 2.2441 3.1798 -3.6954 44 1 1.1084 4.2078 -2.7847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723421965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:58 Heat of formation + Delta-G solvation = 9.875612 kcal Electronic energy + Delta-G solvation = -20274.191599 eV Core-core repulsion = 17612.431444 eV Total energy + Delta-G solvation = -2661.760154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83857 -38.58234 -35.43436 -34.34620 -33.02427 -30.07292 -29.80378 -27.99575 -26.03750 -24.61438 -23.33995 -22.71510 -22.02284 -20.52963 -19.45038 -18.13633 -17.18287 -16.30714 -16.17130 -15.87744 -15.27848 -15.20273 -14.77259 -14.50432 -14.15545 -13.88177 -13.78366 -13.55645 -13.20959 -12.96650 -12.82336 -12.72921 -12.58255 -12.28831 -12.24586 -12.07068 -11.89665 -11.72078 -11.62030 -11.45467 -11.28704 -10.99175 -10.72906 -10.48767 -10.42605 -10.19228 -8.69866 -8.08783 -6.16025 1.38324 1.40417 1.49388 2.43035 2.93415 3.21848 3.46212 3.88897 3.90095 4.04562 4.16078 4.32223 4.35536 4.51856 4.54233 4.57467 4.62967 4.68861 4.70683 4.79790 4.83322 4.86070 4.87551 5.02855 5.08665 5.10128 5.12280 5.14332 5.17961 5.31937 5.35119 5.36023 5.37337 5.50568 5.53249 5.58874 5.68152 5.78668 5.80867 5.94038 6.30434 6.50665 6.91022 7.02776 7.51897 8.98692 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018509 B = 0.008738 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.421274 B = 3203.693479 C = 4150.904970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C 0.228 3.772 4 H -0.030 1.030 5 C -0.512 4.512 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.943 3.057 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.541 5.541 14 C 0.001 3.999 15 C 0.104 3.896 16 H 0.062 0.938 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.070 4.070 20 C -0.131 4.131 21 C -0.181 4.181 22 C -0.157 4.157 23 C -0.067 4.067 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.258 0.742 30 H 0.006 0.994 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 9.399 -10.201 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.141 4.141 3 C 0.121 3.879 4 H -0.012 1.012 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.264 5.264 14 C -0.147 4.147 15 C -0.004 4.004 16 H 0.080 0.920 17 C -0.175 4.175 18 C -0.146 4.146 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.218 4.218 22 C -0.194 4.194 23 C -0.105 4.105 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.430 8.950 -10.397 13.932 hybrid contribution 0.992 0.154 1.470 1.780 sum -1.438 9.104 -8.926 12.831 Atomic orbital electron populations 1.21939 0.96603 0.99969 1.00735 1.21367 0.94285 0.98843 0.99603 1.19001 0.93736 0.90691 0.84469 1.01199 1.21629 0.92546 1.40948 0.99949 0.92054 1.25596 1.01452 0.95422 0.95907 1.70059 1.36019 1.44157 1.05706 0.85778 0.81765 0.77497 0.78009 1.20448 1.21189 1.19364 1.62263 1.02151 1.27096 1.34844 1.22958 0.91267 1.00129 1.00329 1.21472 0.96967 0.88675 0.93284 0.91976 1.21970 0.98458 0.97117 0.99950 1.21393 0.98500 0.96787 0.97886 1.21086 1.01678 0.95810 0.92185 1.21458 1.00494 0.98406 0.92843 1.23034 0.92691 1.01669 1.04453 1.23024 1.00980 1.00527 0.94836 1.21197 0.98400 0.94409 0.96448 0.94318 0.91450 0.93615 0.94703 0.93172 0.93283 0.97518 0.90714 0.89778 0.93422 0.94000 0.92131 0.93323 0.91300 0.90620 0.88519 0.89683 0.88414 0.87472 0.92141 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.25 71.98 0.59 -4.69 16 2 C -0.10 -4.94 5.49 30.59 0.17 -4.77 16 3 C 0.23 11.43 0.93 44.17 0.04 11.47 16 4 H -0.03 -1.68 7.28 -2.39 -0.02 -1.70 16 5 C -0.51 -27.78 6.53 25.60 0.17 -27.61 16 6 H 0.06 3.34 5.37 -2.91 -0.02 3.33 16 7 C 0.01 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.43 11.74 21.45 0.25 -53.18 16 9 Si 0.94 44.20 29.54 68.60 2.03 46.22 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.54 -22.84 4.65 -875.95 -4.07 -26.92 16 14 C 0.00 0.04 8.21 127.69 1.05 1.08 16 15 C 0.10 4.07 1.80 44.96 0.08 4.15 16 16 H 0.06 2.79 5.67 -2.39 -0.01 2.78 16 17 C -0.14 -5.28 4.35 30.56 0.13 -5.14 16 18 C -0.11 -3.44 5.93 30.63 0.18 -3.26 16 19 C -0.07 -1.79 5.67 30.70 0.17 -1.62 16 20 C -0.13 -3.43 1.97 -52.20 -0.10 -3.54 16 21 C -0.18 -4.42 9.93 30.55 0.30 -4.11 16 22 C -0.16 -3.23 9.99 30.54 0.31 -2.93 16 23 C -0.07 -2.06 4.64 30.70 0.14 -1.91 16 24 H 0.04 1.52 7.12 -2.39 -0.02 1.51 16 25 H 0.07 2.33 6.54 -2.39 -0.02 2.32 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 2.73 6.42 -2.38 -0.02 2.72 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.01 0.24 6.48 -2.39 -0.02 0.22 16 31 H 0.07 2.28 6.19 -2.39 -0.01 2.27 16 32 H 0.08 2.91 3.56 -2.39 -0.01 2.90 16 33 H 0.05 1.77 6.66 -2.39 -0.02 1.75 16 34 H 0.04 2.00 5.88 -2.39 -0.01 1.99 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.87 8.09 -2.39 -0.02 1.85 16 44 H 0.07 1.98 6.17 -2.38 -0.01 1.97 16 Total: -1.00 -59.10 317.34 2.85 -56.25 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.96 Total: 19.24 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.68 Total: -41.61 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.82 Total: -80.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -59.10 2.85 -56.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.121 kcal (2) G-P(sol) polarization free energy of solvation -59.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds