Wall clock time and date at job start Mon Mar 30 2020 07:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46513 * 2 1 4 4 H 1.09005 * 109.46338 * 177.40689 * 3 2 1 5 5 C 1.50700 * 109.47255 * 297.40601 * 3 2 1 6 6 H 1.07998 * 119.99403 * 120.00324 * 5 3 2 7 7 C 1.37872 * 120.00209 * 300.00479 * 5 3 2 8 8 N 1.31522 * 120.00150 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00296 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47028 * 59.99564 * 9 7 5 11 11 H 1.48493 * 109.47030 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46811 * 299.99837 * 9 7 5 13 13 N 1.46898 * 109.47068 * 57.41137 * 3 2 1 14 14 C 1.46897 * 110.99703 * 182.62997 * 13 3 2 15 15 C 1.46900 * 111.00248 * 58.67661 * 13 3 2 16 16 H 1.09001 * 109.47103 * 309.50240 * 15 13 3 17 17 C 1.52931 * 109.47413 * 69.51147 * 15 13 3 18 18 C 1.52948 * 109.82629 * 182.97665 * 17 15 13 19 19 C 1.53179 * 109.44498 * 297.01482 * 18 17 15 20 20 C 1.53151 * 108.98078 * 56.51026 * 19 18 17 21 21 C 1.52811 * 117.75034 * 160.43056 * 20 19 18 22 22 C 1.52856 * 117.68003 * 91.54775 * 20 19 18 23 23 C 1.53175 * 114.98877 * 306.25217 * 20 19 18 24 24 H 1.08999 * 109.46585 * 176.18377 * 1 2 3 25 25 H 1.08998 * 109.46961 * 296.17872 * 1 2 3 26 26 H 1.08994 * 109.47602 * 56.18303 * 1 2 3 27 27 H 1.08997 * 109.47206 * 240.00663 * 2 1 3 28 28 H 1.08997 * 109.47029 * 119.99796 * 2 1 3 29 29 H 0.96994 * 120.00078 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47362 * 296.04262 * 14 13 3 31 31 H 1.09000 * 109.47627 * 56.04673 * 14 13 3 32 32 H 1.09002 * 109.47517 * 176.04468 * 14 13 3 33 33 H 1.09002 * 109.41911 * 62.86990 * 17 15 13 34 34 H 1.09003 * 109.35722 * 303.04698 * 17 15 13 35 35 H 1.08994 * 109.48032 * 177.01927 * 18 17 15 36 36 H 1.08997 * 109.47565 * 57.00757 * 18 17 15 37 37 H 1.09000 * 109.57026 * 176.39029 * 19 18 17 38 38 H 1.08999 * 109.57370 * 296.63034 * 19 18 17 39 39 H 1.09005 * 117.49853 * 359.84778 * 21 20 19 40 40 H 1.09002 * 117.50368 * 144.88557 * 21 20 19 41 41 H 1.08996 * 117.50663 * 215.21940 * 22 20 19 42 42 H 1.09001 * 117.50180 * 0.24899 * 22 20 19 43 43 H 1.08998 * 109.46965 * 293.92286 * 23 20 19 44 44 H 1.09006 * 109.67682 * 173.68227 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1290 1.4430 0.0465 5 6 1.5907 2.1342 -1.2613 6 1 0.9664 3.0135 -1.2020 7 6 1.9767 1.6445 -2.4910 8 7 2.7374 0.5740 -2.5632 9 14 1.4205 2.5022 -4.0545 10 1 1.9159 3.9020 -4.0542 11 1 1.9659 1.7836 -5.2340 12 1 -0.0632 2.5022 -4.1180 13 7 1.4998 2.1529 1.1669 14 6 1.9185 3.5609 1.1664 15 6 1.8922 1.4874 2.4164 16 1 1.6588 0.4247 2.3508 17 6 3.3944 1.6667 2.6395 18 6 3.8251 0.9144 3.8996 19 6 3.1199 1.5163 5.1190 20 6 1.6059 1.4668 4.8935 21 6 0.7000 1.5780 6.1192 22 6 0.8527 0.2364 5.3988 23 6 1.1248 2.1075 3.5881 24 1 -0.3632 -1.0254 -0.0684 25 1 -0.3633 0.4534 0.9222 26 1 -0.3634 0.5719 -0.8537 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.0093 0.2297 -3.4283 30 1 3.0024 3.6177 1.2672 31 1 1.6156 4.0298 0.2302 32 1 1.4484 4.0802 2.0015 33 1 3.6195 2.7269 2.7559 34 1 3.9369 1.2735 1.7797 35 1 4.9044 1.0019 4.0241 36 1 3.5543 -0.1371 3.8055 37 1 3.3755 0.9416 6.0092 38 1 3.4359 2.5513 5.2496 39 1 1.1802 1.6845 7.0919 40 1 -0.2447 2.1085 6.0004 41 1 0.0084 -0.1156 4.8060 42 1 1.4334 -0.5398 5.8972 43 1 1.3118 3.1809 3.6197 44 1 0.0573 1.9265 3.4620 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723421966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:00 Heat of formation + Delta-G solvation = 0.130193 kcal Electronic energy + Delta-G solvation = -20127.118447 eV Core-core repulsion = 17464.935700 eV Total energy + Delta-G solvation = -2662.182747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83811 -38.53621 -35.62859 -34.10440 -32.86265 -30.80268 -28.36432 -28.06360 -26.79685 -24.54125 -23.34061 -22.98843 -22.17729 -20.06767 -19.39785 -18.06508 -17.09037 -16.40428 -16.19524 -15.78487 -15.61390 -15.11642 -14.75330 -14.52903 -14.11857 -14.00117 -13.84806 -13.46369 -13.17786 -12.87603 -12.78190 -12.60497 -12.52918 -12.27813 -12.20294 -12.09554 -11.95003 -11.80976 -11.62450 -11.51311 -11.25874 -11.15865 -10.76586 -10.67051 -10.40274 -10.29176 -8.70486 -8.05306 -6.14925 1.42604 1.43827 1.50893 2.44504 2.93004 3.22551 3.43124 3.86468 3.88116 3.97726 4.12408 4.26472 4.30035 4.44158 4.49758 4.59156 4.64465 4.71530 4.76300 4.77975 4.82931 4.87236 4.94953 5.01722 5.07010 5.11286 5.11997 5.14765 5.27716 5.29674 5.31685 5.33674 5.37206 5.48021 5.53046 5.56732 5.61360 5.76436 5.83843 5.92904 6.36213 6.51013 6.87411 7.00100 7.52716 8.99785 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.005931 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.112578 B = 4719.975291 C = 4790.579118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C 0.226 3.774 4 H -0.039 1.039 5 C -0.505 4.505 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.533 5.533 14 C 0.037 3.963 15 C 0.088 3.912 16 H 0.065 0.935 17 C -0.145 4.145 18 C -0.106 4.106 19 C -0.072 4.072 20 C -0.131 4.131 21 C -0.161 4.161 22 C -0.178 4.178 23 C -0.060 4.060 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.023 0.977 29 H 0.259 0.741 30 H 0.009 0.991 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 1.406 15.743 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C 0.119 3.881 4 H -0.021 1.021 5 C -0.543 4.543 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.256 5.256 14 C -0.112 4.112 15 C -0.021 4.021 16 H 0.083 0.917 17 C -0.184 4.184 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.198 4.198 22 C -0.215 4.215 23 C -0.098 4.098 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.897 1.287 15.550 15.718 hybrid contribution 0.910 0.216 -1.432 1.711 sum -0.987 1.503 14.118 14.232 Atomic orbital electron populations 1.21305 0.95826 0.98383 1.00882 1.21438 0.96289 0.97846 0.98919 1.18972 0.90225 0.91304 0.87574 1.02142 1.21318 1.30370 1.11673 0.90972 0.92604 1.25606 0.95433 0.95704 1.01738 1.70012 1.37249 1.23728 1.25093 0.85724 0.78664 0.78635 0.79285 1.19897 1.21278 1.19800 1.62251 1.59255 1.02136 1.01975 1.22232 0.96982 0.90448 1.01502 1.21678 0.92280 0.98457 0.89665 0.91702 1.22073 0.98073 1.00503 0.97750 1.21409 0.99839 0.99228 0.93964 1.21087 0.91327 1.01226 0.97243 1.21457 0.94109 1.02779 0.94780 1.23024 1.00985 0.99807 0.95976 1.23049 1.02787 0.91674 1.03965 1.21046 0.98721 0.99137 0.90920 0.94743 0.93024 0.94579 0.92173 0.95803 0.93222 0.97216 0.92765 0.90947 0.92134 0.95188 0.91461 0.92628 0.90348 0.91391 0.87470 0.88737 0.89625 0.88181 0.91777 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.52 71.98 0.69 -4.03 16 2 C -0.11 -5.22 5.05 30.60 0.15 -5.06 16 3 C 0.23 11.44 1.52 44.17 0.07 11.51 16 4 H -0.04 -2.23 6.59 -2.38 -0.02 -2.25 16 5 C -0.50 -27.57 6.68 25.60 0.17 -27.40 16 6 H 0.06 3.05 6.50 -2.91 -0.02 3.03 16 7 C 0.01 0.74 5.30 84.65 0.45 1.19 16 8 N -0.92 -53.49 11.30 21.45 0.24 -53.24 16 9 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.53 -22.47 3.77 -875.96 -3.31 -25.78 16 14 C 0.04 1.43 8.52 127.69 1.09 2.52 16 15 C 0.09 3.11 1.97 44.95 0.09 3.20 16 16 H 0.06 2.51 5.86 -2.39 -0.01 2.49 16 17 C -0.14 -4.91 4.32 30.55 0.13 -4.78 16 18 C -0.11 -2.81 5.93 30.64 0.18 -2.63 16 19 C -0.07 -1.55 5.67 30.70 0.17 -1.38 16 20 C -0.13 -3.04 1.98 -52.18 -0.10 -3.14 16 21 C -0.16 -3.03 9.99 30.54 0.31 -2.72 16 22 C -0.18 -3.78 9.93 30.56 0.30 -3.47 16 23 C -0.06 -1.74 4.93 30.71 0.15 -1.59 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 2.14 7.65 -2.39 -0.02 2.12 16 26 H 0.04 1.73 7.17 -2.39 -0.02 1.71 16 27 H 0.06 3.33 6.01 -2.39 -0.01 3.32 16 28 H 0.02 1.08 6.32 -2.39 -0.02 1.07 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.01 0.37 6.28 -2.39 -0.01 0.36 16 31 H 0.05 2.31 6.18 -2.39 -0.01 2.29 16 32 H 0.07 2.38 6.39 -2.39 -0.02 2.36 16 33 H 0.06 2.00 6.50 -2.39 -0.02 1.99 16 34 H 0.03 1.21 6.56 -2.39 -0.02 1.20 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 1.81 6.40 -2.39 -0.02 1.80 16 44 H 0.06 1.78 8.10 -2.38 -0.02 1.76 16 Total: -1.00 -58.93 321.31 3.76 -55.17 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.95 Total: 15.49 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 3.85 Total: -37.79 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -3.06 Total: -79.02 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.93 3.76 -55.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.300 kcal (2) G-P(sol) polarization free energy of solvation -58.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds