Wall clock time and date at job start Mon Mar 30 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 H 1.08998 * 109.46868 * 308.70403 * 3 2 1 5 5 C 1.50699 * 109.46803 * 188.70723 * 3 2 1 6 6 H 1.07998 * 120.00193 * 239.99655 * 5 3 2 7 7 C 1.37883 * 120.00322 * 60.00415 * 5 3 2 8 8 N 1.31514 * 119.99551 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46978 * 59.99742 * 9 7 5 11 11 H 1.48492 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47501 * 299.99935 * 9 7 5 13 13 N 1.46899 * 109.47263 * 68.70858 * 3 2 1 14 14 C 1.46903 * 110.99668 * 267.92081 * 13 3 2 15 15 H 1.08996 * 109.47210 * 33.05353 * 14 13 3 16 16 C 1.53003 * 109.46867 * 273.05344 * 14 13 3 17 17 C 1.52995 * 117.49760 * 54.21756 * 16 14 13 18 18 C 1.53001 * 60.03117 * 107.47737 * 17 16 14 19 19 C 1.52999 * 109.47074 * 153.05739 * 14 13 3 20 20 C 1.54271 * 110.03304 * 57.16002 * 19 14 13 21 21 C 1.54888 * 104.19586 * 217.10371 * 20 19 14 22 22 C 1.54888 * 102.74781 * 37.94772 * 21 20 19 23 23 C 1.53872 * 110.02989 * 299.99905 * 19 14 13 24 24 H 1.09005 * 109.47086 * 309.00761 * 1 2 3 25 25 H 1.09000 * 109.47192 * 69.00436 * 1 2 3 26 26 H 1.08998 * 109.47635 * 189.00865 * 1 2 3 27 27 H 1.09008 * 109.46673 * 240.00099 * 2 1 3 28 28 H 1.08997 * 109.47124 * 120.00554 * 2 1 3 29 29 H 0.97004 * 119.99936 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00074 * 143.96708 * 13 3 2 31 31 H 1.09005 * 115.54990 * 268.55077 * 16 14 13 32 32 H 1.09004 * 117.50252 * 214.97603 * 17 16 14 33 33 H 1.09004 * 117.50367 * 359.97438 * 17 16 14 34 34 H 1.09004 * 117.49800 * 107.49921 * 18 17 16 35 35 H 1.08999 * 117.49805 * 252.52228 * 18 17 16 36 36 H 1.08996 * 110.01684 * 178.60316 * 19 14 13 37 37 H 1.08997 * 110.48518 * 335.78804 * 20 19 14 38 38 H 1.09005 * 110.48514 * 98.42619 * 20 19 14 39 39 H 1.08998 * 110.76007 * 279.63003 * 21 20 19 40 40 H 1.09003 * 110.90796 * 156.33027 * 21 20 19 41 41 H 1.09003 * 110.48774 * 203.37319 * 22 21 20 42 42 H 1.09001 * 110.60163 * 80.78911 * 22 21 20 43 43 H 1.09004 * 110.02924 * 238.56675 * 23 19 14 44 44 H 1.08995 * 110.03821 * 359.94757 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5553 1.9992 -0.8020 5 6 3.5316 1.4478 -0.2151 6 1 4.1834 1.8759 0.5320 7 6 4.0642 0.9062 -1.3658 8 7 3.2705 0.3845 -2.2755 9 14 5.9130 0.9134 -1.6327 10 1 6.5738 0.1553 -0.5402 11 1 6.2273 0.2767 -2.9369 12 1 6.4077 2.3136 -1.6330 13 7 1.7291 2.0718 1.2904 14 6 0.4351 2.7652 1.2397 15 1 -0.2388 2.2286 0.5719 16 6 0.6400 4.1898 0.7206 17 6 1.3640 4.3571 -0.6167 18 6 -0.1428 4.6067 -0.5270 19 6 -0.1716 2.8162 2.6434 20 6 0.8039 3.5111 3.6157 21 6 0.6407 2.7277 4.9419 22 6 0.4710 1.2665 4.4570 23 6 -0.3831 1.3891 3.1782 24 1 -0.3633 0.6469 0.7986 25 1 -0.3633 0.3682 -0.9594 26 1 -0.3634 -1.0149 0.1609 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.6451 0.0032 -3.0849 30 1 2.4657 2.7009 1.5727 31 1 0.8120 4.9483 1.4844 32 1 2.0121 5.2258 -0.7331 33 1 1.6949 3.4523 -1.1266 34 1 -0.4861 5.6397 -0.5842 35 1 -0.8033 3.8659 -0.9775 36 1 -1.1211 3.3510 2.6202 37 1 1.8277 3.4328 3.2498 38 1 0.5258 4.5561 3.7532 39 1 -0.2459 3.0612 5.4811 40 1 1.5299 2.8273 5.5645 41 1 -0.0500 0.6732 5.2085 42 1 1.4401 0.8236 4.2274 43 1 -1.4353 1.2315 3.4156 44 1 -0.0545 0.6601 2.4376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723857460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:16 Heat of formation + Delta-G solvation = 11.065974 kcal Electronic energy + Delta-G solvation = -20271.135680 eV Core-core repulsion = 17609.427144 eV Total energy + Delta-G solvation = -2661.708536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.16473 -36.53620 -34.94883 -32.23552 -30.79773 -29.21537 -28.18930 -26.20748 -23.84210 -22.51239 -21.81143 -20.91637 -19.70493 -19.34319 -18.66465 -16.42785 -15.64211 -15.21735 -14.98137 -14.47343 -14.27533 -13.38334 -13.01226 -12.92088 -12.65471 -12.44165 -11.87652 -11.76010 -11.50008 -11.07498 -10.89857 -10.86327 -10.72280 -10.66335 -10.61054 -10.52642 -10.37478 -10.20437 -10.07032 -9.97420 -9.72691 -9.54726 -9.40725 -8.99226 -8.71734 -8.38421 -7.03260 -5.99778 -4.05898 3.31403 3.36378 3.39175 4.33613 4.43173 4.96303 5.04280 5.15166 5.29853 5.33086 5.44289 5.52465 5.67840 5.82925 5.88242 5.92324 5.96706 6.03836 6.09073 6.16157 6.21080 6.27267 6.35979 6.39692 6.42368 6.48297 6.54230 6.58284 6.62110 6.67046 6.77899 6.82498 6.89107 6.99508 7.17658 7.33850 7.49644 7.65416 7.81806 8.00261 8.36199 8.49902 8.77608 9.07617 9.59701 11.04932 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.007557 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.949253 B = 3704.467120 C = 3995.265309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C 0.212 3.788 4 H 0.017 0.983 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.672 5.672 14 C 0.113 3.887 15 H 0.081 0.919 16 C -0.178 4.178 17 C -0.181 4.181 18 C -0.189 4.189 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 4.950 8.127 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C 0.105 3.895 4 H 0.035 0.965 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.302 5.302 14 C 0.002 3.998 15 H 0.099 0.901 16 C -0.198 4.198 17 C -0.218 4.218 18 C -0.226 4.226 19 C -0.094 4.094 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.155 4.155 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.010 4.255 8.208 11.602 hybrid contribution 1.214 0.878 -0.802 1.699 sum -5.796 5.133 7.406 10.714 Atomic orbital electron populations 1.22203 1.00110 0.99285 1.00255 1.21551 0.91231 1.00020 1.01730 1.19277 0.94586 0.91026 0.84604 0.96529 1.21306 0.91919 1.38685 1.03568 0.92573 1.24884 0.97634 0.95295 0.96021 1.69876 1.34321 1.39487 1.09006 0.86680 0.86023 0.78140 0.77250 1.20344 1.21440 1.20462 1.60826 1.02031 1.34046 1.33260 1.21422 0.94308 0.89298 0.94736 0.90116 1.23206 1.05372 1.00117 0.91075 1.23352 0.93340 1.04566 1.00503 1.22912 0.95579 1.01020 1.03131 1.21715 0.97120 0.95703 0.94817 1.22348 1.00741 0.97371 0.94609 1.22447 1.00226 0.96233 0.97134 1.22247 1.00670 0.95888 0.96497 1.22207 0.97697 0.97822 0.97802 0.92088 0.94625 0.95390 0.89375 0.94625 0.92972 0.85101 0.88891 0.90075 0.85533 0.90100 0.89404 0.92437 0.90681 0.93235 0.92695 0.92472 0.93259 0.91045 0.93868 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.84 37.16 0.33 -2.91 16 2 C -0.11 -2.50 5.46 -26.73 -0.15 -2.65 16 3 C 0.21 4.94 1.39 -68.87 -0.10 4.84 16 4 H 0.02 0.43 4.80 -51.93 -0.25 0.19 16 5 C -0.52 -13.43 8.59 -34.44 -0.30 -13.73 16 6 H 0.06 1.46 7.51 -52.49 -0.39 1.07 16 7 C 0.06 1.69 5.27 -17.82 -0.09 1.60 16 8 N -0.89 -24.58 11.29 55.43 0.63 -23.95 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.67 -13.10 4.85 -100.96 -0.49 -13.59 16 14 C 0.11 1.92 1.27 -67.71 -0.09 1.84 16 15 H 0.08 1.50 4.83 -51.93 -0.25 1.25 16 16 C -0.18 -2.90 4.95 -90.58 -0.45 -3.35 16 17 C -0.18 -3.26 9.69 -26.73 -0.26 -3.52 16 18 C -0.19 -2.97 10.18 -26.69 -0.27 -3.24 16 19 C -0.07 -1.10 2.82 -89.50 -0.25 -1.36 16 20 C -0.11 -1.57 5.17 -25.07 -0.13 -1.70 16 21 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 22 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 23 C -0.12 -1.76 5.94 -25.61 -0.15 -1.91 16 24 H 0.06 1.13 2.73 -51.93 -0.14 0.98 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 2.34 5.89 -51.92 -0.31 2.03 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.33 6.64 6.50 -39.29 -0.26 6.39 16 31 H 0.09 1.43 7.20 -51.93 -0.37 1.05 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.13 2.75 4.84 -51.93 -0.25 2.50 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.15 6.26 -51.93 -0.33 0.82 16 38 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.52 4.97 -51.93 -0.26 1.26 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -25.55 319.79 -9.74 -35.28 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.43 Total: 11.09 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -2.24 Total: -29.60 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.14 Total: -37.55 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.55 -9.74 -35.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723857460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.349 kcal (2) G-P(sol) polarization free energy of solvation -25.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds