Wall clock time and date at job start Mon Mar 30 2020 07:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 H 1.08998 * 109.46868 * 308.70403 * 3 2 1 5 5 C 1.50699 * 109.46803 * 188.70723 * 3 2 1 6 6 H 1.07998 * 120.00193 * 239.99655 * 5 3 2 7 7 C 1.37883 * 120.00322 * 60.00415 * 5 3 2 8 8 N 1.31514 * 119.99551 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46978 * 59.99742 * 9 7 5 11 11 H 1.48492 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47501 * 299.99935 * 9 7 5 13 13 N 1.46899 * 109.47263 * 68.70858 * 3 2 1 14 14 C 1.46903 * 110.99668 * 267.92081 * 13 3 2 15 15 H 1.08996 * 109.47210 * 33.05353 * 14 13 3 16 16 C 1.53003 * 109.46867 * 273.05344 * 14 13 3 17 17 C 1.52995 * 117.49760 * 54.21756 * 16 14 13 18 18 C 1.53001 * 60.03117 * 107.47737 * 17 16 14 19 19 C 1.52999 * 109.47074 * 153.05739 * 14 13 3 20 20 C 1.54271 * 110.03304 * 57.16002 * 19 14 13 21 21 C 1.54888 * 104.19586 * 217.10371 * 20 19 14 22 22 C 1.54888 * 102.74781 * 37.94772 * 21 20 19 23 23 C 1.53872 * 110.02989 * 299.99905 * 19 14 13 24 24 H 1.09005 * 109.47086 * 309.00761 * 1 2 3 25 25 H 1.09000 * 109.47192 * 69.00436 * 1 2 3 26 26 H 1.08998 * 109.47635 * 189.00865 * 1 2 3 27 27 H 1.09008 * 109.46673 * 240.00099 * 2 1 3 28 28 H 1.08997 * 109.47124 * 120.00554 * 2 1 3 29 29 H 0.97004 * 119.99936 * 180.02562 * 8 7 5 30 30 H 1.00895 * 111.00074 * 143.96708 * 13 3 2 31 31 H 1.09005 * 115.54990 * 268.55077 * 16 14 13 32 32 H 1.09004 * 117.50252 * 214.97603 * 17 16 14 33 33 H 1.09004 * 117.50367 * 359.97438 * 17 16 14 34 34 H 1.09004 * 117.49800 * 107.49921 * 18 17 16 35 35 H 1.08999 * 117.49805 * 252.52228 * 18 17 16 36 36 H 1.08996 * 110.01684 * 178.60316 * 19 14 13 37 37 H 1.08997 * 110.48518 * 335.78804 * 20 19 14 38 38 H 1.09005 * 110.48514 * 98.42619 * 20 19 14 39 39 H 1.08998 * 110.76007 * 279.63003 * 21 20 19 40 40 H 1.09003 * 110.90796 * 156.33027 * 21 20 19 41 41 H 1.09003 * 110.48774 * 203.37319 * 22 21 20 42 42 H 1.09001 * 110.60163 * 80.78911 * 22 21 20 43 43 H 1.09004 * 110.02924 * 238.56675 * 23 19 14 44 44 H 1.08995 * 110.03821 * 359.94757 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5553 1.9992 -0.8020 5 6 3.5316 1.4478 -0.2151 6 1 4.1834 1.8759 0.5320 7 6 4.0642 0.9062 -1.3658 8 7 3.2705 0.3845 -2.2755 9 14 5.9130 0.9134 -1.6327 10 1 6.5738 0.1553 -0.5402 11 1 6.2273 0.2767 -2.9369 12 1 6.4077 2.3136 -1.6330 13 7 1.7291 2.0718 1.2904 14 6 0.4351 2.7652 1.2397 15 1 -0.2388 2.2286 0.5719 16 6 0.6400 4.1898 0.7206 17 6 1.3640 4.3571 -0.6167 18 6 -0.1428 4.6067 -0.5270 19 6 -0.1716 2.8162 2.6434 20 6 0.8039 3.5111 3.6157 21 6 0.6407 2.7277 4.9419 22 6 0.4710 1.2665 4.4570 23 6 -0.3831 1.3891 3.1782 24 1 -0.3633 0.6469 0.7986 25 1 -0.3633 0.3682 -0.9594 26 1 -0.3634 -1.0149 0.1609 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.6451 0.0032 -3.0849 30 1 2.4657 2.7009 1.5727 31 1 0.8120 4.9483 1.4844 32 1 2.0121 5.2258 -0.7331 33 1 1.6949 3.4523 -1.1266 34 1 -0.4861 5.6397 -0.5842 35 1 -0.8033 3.8659 -0.9775 36 1 -1.1211 3.3510 2.6202 37 1 1.8277 3.4328 3.2498 38 1 0.5258 4.5561 3.7532 39 1 -0.2459 3.0612 5.4811 40 1 1.5299 2.8273 5.5645 41 1 -0.0500 0.6732 5.2085 42 1 1.4401 0.8236 4.2274 43 1 -1.4353 1.2315 3.4156 44 1 -0.0545 0.6601 2.4376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723857460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:11 Heat of formation + Delta-G solvation = -0.853652 kcal Electronic energy + Delta-G solvation = -20271.652554 eV Core-core repulsion = 17609.427144 eV Total energy + Delta-G solvation = -2662.225410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -40.53158 -37.79704 -36.64942 -34.08706 -32.43869 -30.69847 -29.33154 -27.94244 -25.37906 -24.25206 -23.15956 -22.18596 -21.19976 -20.83355 -19.98638 -18.32456 -16.99298 -16.90204 -16.27736 -15.99523 -15.83149 -14.87841 -14.64262 -14.27997 -14.08885 -13.86305 -13.48756 -13.37826 -12.99196 -12.82287 -12.71794 -12.63602 -12.26276 -12.11283 -11.91536 -11.77551 -11.70306 -11.60062 -11.42815 -11.29568 -11.21100 -11.08811 -10.82313 -10.61270 -10.50755 -10.40485 -8.67570 -8.05316 -6.16959 1.41366 1.42573 1.49227 2.44054 2.98489 3.22563 3.72052 3.78806 4.00207 4.07552 4.12382 4.25749 4.31020 4.48355 4.65062 4.70608 4.72998 4.74717 4.80411 4.82620 4.90067 4.95885 5.01321 5.04373 5.09731 5.13866 5.24780 5.27463 5.29698 5.33406 5.40417 5.50021 5.55218 5.59034 5.64013 5.72507 5.74067 5.81828 5.90481 6.06172 6.40215 6.65474 6.98463 7.18727 7.52397 8.97858 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.007557 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.949253 B = 3704.467120 C = 3995.265309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C 0.222 3.778 4 H -0.002 1.002 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.664 5.664 14 C 0.114 3.886 15 H 0.065 0.935 16 C -0.170 4.170 17 C -0.202 4.202 18 C -0.170 4.170 19 C -0.070 4.070 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 6.325 9.841 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.015 0.985 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.293 5.293 14 C 0.004 3.996 15 H 0.083 0.917 16 C -0.189 4.189 17 C -0.239 4.239 18 C -0.207 4.207 19 C -0.089 4.089 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.157 4.157 24 H 0.097 0.903 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.011 5.635 9.935 13.951 hybrid contribution 1.504 0.448 -1.331 2.058 sum -6.507 6.083 8.604 12.385 Atomic orbital electron populations 1.22084 0.97439 1.00689 1.00536 1.21390 0.93649 0.99632 0.99397 1.19024 0.92950 0.90967 0.85685 0.98511 1.21643 0.93523 1.38075 1.03337 0.93086 1.25564 1.01323 0.95273 0.96015 1.70010 1.35728 1.40333 1.09281 0.85779 0.81634 0.78175 0.76989 1.20116 1.21353 1.19938 1.60756 1.03077 1.34549 1.30908 1.21439 0.92555 0.89374 0.96267 0.91717 1.23202 1.04696 0.99986 0.91033 1.23143 0.95411 1.03196 1.02150 1.22976 0.93603 1.02424 1.01704 1.21698 0.97870 0.96135 0.93184 1.22322 0.99327 0.98473 0.94829 1.22425 1.01391 0.94856 0.96693 1.22220 0.99471 0.97063 0.96543 1.22195 0.98808 0.97111 0.97587 0.90259 0.95397 0.93892 0.92702 0.95743 0.93253 0.85461 0.87017 0.89296 0.89681 0.87309 0.89947 0.90726 0.92519 0.91502 0.90839 0.91888 0.91698 0.93327 0.92191 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 8.84 71.98 0.64 -5.44 16 2 C -0.10 -4.93 5.46 30.59 0.17 -4.76 16 3 C 0.22 10.65 1.39 44.17 0.06 10.71 16 4 H 0.00 -0.12 4.80 -2.39 -0.01 -0.14 16 5 C -0.53 -28.23 8.59 25.60 0.22 -28.01 16 6 H 0.05 2.72 7.51 -2.91 -0.02 2.70 16 7 C 0.02 0.94 5.27 84.66 0.45 1.39 16 8 N -0.91 -52.30 11.29 21.45 0.24 -52.05 16 9 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.66 -26.12 4.85 -473.32 -2.30 -28.41 16 14 C 0.11 3.76 1.27 44.92 0.06 3.82 16 15 H 0.06 2.36 4.83 -2.39 -0.01 2.35 16 16 C -0.17 -5.25 4.95 -10.77 -0.05 -5.31 16 17 C -0.20 -7.26 9.69 30.59 0.30 -6.96 16 18 C -0.17 -5.02 10.18 30.62 0.31 -4.71 16 19 C -0.07 -1.90 2.82 -10.07 -0.03 -1.93 16 20 C -0.11 -2.79 5.17 31.67 0.16 -2.63 16 21 C -0.12 -2.62 6.91 31.88 0.22 -2.40 16 22 C -0.12 -2.98 6.83 31.67 0.22 -2.77 16 23 C -0.12 -3.32 5.94 31.32 0.19 -3.14 16 24 H 0.08 2.90 2.73 -2.38 -0.01 2.90 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 3.03 5.89 -2.38 -0.01 3.02 16 28 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.33 13.28 6.50 -89.70 -0.58 12.69 16 31 H 0.11 3.08 7.20 -2.38 -0.02 3.07 16 32 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.08 3.86 4.84 -2.39 -0.01 3.85 16 34 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.63 6.26 -2.39 -0.01 1.62 16 38 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.06 2.10 4.97 -2.39 -0.01 2.09 16 Total: -1.00 -56.13 319.79 3.27 -52.86 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.39 Total: 33.88 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 2.90 Total: -52.12 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.05 Total: -80.47 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -56.13 3.27 -52.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723857460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.009 kcal (2) G-P(sol) polarization free energy of solvation -56.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds