Wall clock time and date at job start Mon Mar 30 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 H 1.09008 * 109.46782 * 52.92838 * 3 2 1 5 5 C 1.50692 * 109.47190 * 172.92755 * 3 2 1 6 6 H 1.07999 * 119.99951 * 120.00212 * 5 3 2 7 7 C 1.37880 * 120.00208 * 299.99974 * 5 3 2 8 8 N 1.31510 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47379 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47004 * 120.00544 * 9 7 5 12 12 H 1.48510 * 109.47056 * 240.00307 * 9 7 5 13 13 N 1.46892 * 109.47256 * 292.93128 * 3 2 1 14 14 C 1.46904 * 111.00096 * 90.23563 * 13 3 2 15 15 H 1.09002 * 109.47306 * 328.59111 * 14 13 3 16 16 C 1.53001 * 109.47129 * 88.58971 * 14 13 3 17 17 C 1.52996 * 117.51892 * 227.54142 * 16 14 13 18 18 C 1.52995 * 117.50056 * 296.17219 * 16 14 13 19 19 C 1.52999 * 109.47104 * 208.59161 * 14 13 3 20 20 C 1.54270 * 110.03308 * 170.85305 * 19 14 13 21 21 C 1.54966 * 104.15923 * 217.13534 * 20 19 14 22 22 C 1.54891 * 102.77706 * 37.88644 * 21 20 19 23 23 C 1.53867 * 110.03528 * 53.63507 * 19 14 13 24 24 H 1.09003 * 109.47390 * 305.58464 * 1 2 3 25 25 H 1.09006 * 109.47119 * 65.58562 * 1 2 3 26 26 H 1.08999 * 109.47426 * 185.58441 * 1 2 3 27 27 H 1.08994 * 109.47006 * 239.99611 * 2 1 3 28 28 H 1.09001 * 109.46808 * 119.99985 * 2 1 3 29 29 H 0.97001 * 120.00387 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00313 * 214.18745 * 13 3 2 31 31 H 1.08998 * 115.54406 * 81.84132 * 16 14 13 32 32 H 1.09002 * 117.49882 * 214.96966 * 17 16 14 33 33 H 1.09003 * 117.49660 * 359.97438 * 17 16 14 34 34 H 1.09000 * 117.49473 * 359.97262 * 18 16 14 35 35 H 1.08999 * 117.50241 * 144.99224 * 18 16 14 36 36 H 1.08999 * 110.01881 * 292.24418 * 19 14 13 37 37 H 1.09002 * 110.48010 * 335.78327 * 20 19 14 38 38 H 1.08999 * 110.48322 * 98.42759 * 20 19 14 39 39 H 1.09003 * 110.71876 * 279.57291 * 21 20 19 40 40 H 1.08995 * 110.92043 * 156.29529 * 21 20 19 41 41 H 1.08999 * 110.48364 * 203.40199 * 22 21 20 42 42 H 1.09001 * 110.59847 * 80.81714 * 22 21 20 43 43 H 1.09003 * 110.03379 * 238.57313 * 23 19 14 44 44 H 1.09002 * 110.03396 * 359.94848 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5771 1.9915 0.8200 5 6 3.5368 1.4460 0.1749 6 1 4.1683 1.8813 -0.5854 7 6 4.1001 0.8935 1.3057 8 7 3.3312 0.3631 2.2313 9 14 5.9555 0.8973 1.5221 10 1 6.5896 1.5482 0.3477 11 1 6.3086 1.6477 2.7540 12 1 6.4433 -0.5007 1.6371 13 7 1.6946 2.0840 -1.2755 14 6 0.3824 2.7398 -1.1965 15 1 -0.2578 2.1898 -0.5067 16 6 0.5586 4.1745 -0.6949 17 6 -0.3669 4.6499 0.4267 18 6 1.1075 4.3657 0.7203 19 6 -0.2619 2.7601 -2.5841 20 6 -1.7262 3.2344 -2.4799 21 6 -2.4784 2.3751 -3.5273 22 6 -1.7867 0.9952 -3.3988 23 6 -0.3002 1.3372 -3.1684 24 1 -0.3634 0.5980 0.8358 25 1 -0.3634 0.4248 -0.9358 26 1 -0.3634 -1.0228 0.1000 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7274 -0.0260 3.0267 30 1 2.4094 2.7383 -1.5565 31 1 0.8497 4.9041 -1.4505 32 1 -0.6847 5.6924 0.4092 33 1 -1.1019 3.9406 0.8073 34 1 1.3426 3.4693 1.2942 35 1 1.7598 5.2211 0.8959 36 1 0.2983 3.4205 -3.2460 37 1 -2.1177 3.0465 -1.4802 38 1 -1.8027 4.2931 -2.7280 39 1 -2.3437 2.7828 -4.5292 40 1 -3.5376 2.3006 -3.2813 41 1 -1.9081 0.4206 -4.3170 42 1 -2.1873 0.4431 -2.5486 43 1 0.2408 1.3072 -4.1142 44 1 0.1411 0.6322 -2.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723857461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:18 Heat of formation + Delta-G solvation = 4.770870 kcal Electronic energy + Delta-G solvation = -20154.066298 eV Core-core repulsion = 17492.084785 eV Total energy + Delta-G solvation = -2661.981513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.10334 -36.60028 -35.07117 -32.29905 -30.85195 -29.07573 -28.30828 -26.24923 -23.83043 -22.44138 -21.86023 -20.45621 -20.10743 -19.42435 -18.91964 -16.39074 -15.78506 -15.26712 -14.83868 -14.40389 -14.17238 -13.73322 -13.29791 -13.01768 -12.52466 -12.14006 -12.08089 -11.71847 -11.39908 -11.03381 -10.98665 -10.87431 -10.81985 -10.75772 -10.66732 -10.54333 -10.48241 -10.32297 -10.13963 -10.03124 -9.74584 -9.57696 -9.46468 -9.03860 -8.70462 -8.40170 -7.05759 -5.99749 -4.05407 3.29205 3.37717 3.41550 4.30353 4.43181 4.91121 4.96094 5.02251 5.24818 5.30766 5.40744 5.47838 5.63510 5.79550 5.82669 5.86299 5.94118 6.01246 6.05208 6.08691 6.10839 6.16925 6.29981 6.35865 6.38494 6.43940 6.46318 6.54891 6.58731 6.60341 6.65997 6.81131 6.89782 6.98351 7.20181 7.30082 7.47496 7.65301 7.82407 8.00166 8.35628 8.49688 8.77028 9.07965 9.60145 11.05314 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006897 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.202537 B = 4059.039098 C = 4542.594503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C 0.214 3.786 4 H 0.016 0.984 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.115 3.885 15 H 0.081 0.919 16 C -0.173 4.173 17 C -0.186 4.186 18 C -0.177 4.177 19 C -0.073 4.073 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.118 4.118 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 4.824 -7.124 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C 0.106 3.894 4 H 0.033 0.967 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.306 5.306 14 C 0.004 3.996 15 H 0.099 0.901 16 C -0.193 4.193 17 C -0.224 4.224 18 C -0.213 4.213 19 C -0.092 4.092 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.166 4.166 23 C -0.155 4.155 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.515 4.125 -7.224 12.639 hybrid contribution 1.267 0.870 0.786 1.726 sum -8.249 4.995 -6.438 11.595 Atomic orbital electron populations 1.22176 1.00022 0.98902 1.00478 1.21556 0.91257 0.99995 1.01820 1.19270 0.94475 0.90874 0.84755 0.96714 1.21378 0.91778 1.38011 1.04157 0.92432 1.24890 0.97802 0.95315 0.95901 1.69892 1.34388 1.39282 1.09213 0.86558 0.85986 0.77641 0.77894 1.19864 1.21228 1.21097 1.60830 1.01892 1.33481 1.34384 1.21463 0.93753 0.89336 0.95034 0.90070 1.23134 1.04515 0.99874 0.91780 1.22876 0.94019 1.00845 1.04665 1.23164 0.94977 1.03982 0.99207 1.21678 0.94407 0.96531 0.96620 1.22395 0.95517 0.98572 0.98878 1.22498 0.98559 0.96185 0.98987 1.22417 0.96884 0.96550 1.00708 1.22223 0.94621 0.97583 1.01074 0.94629 0.92225 0.95423 0.94555 0.89336 0.93092 0.85249 0.89048 0.89985 0.89445 0.86668 0.89832 0.92156 0.91826 0.92470 0.92153 0.92442 0.92598 0.92078 0.92892 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.37 37.16 0.31 -2.88 16 2 C -0.11 -2.54 5.46 -26.73 -0.15 -2.69 16 3 C 0.21 5.05 1.82 -68.87 -0.13 4.92 16 4 H 0.02 0.39 4.72 -51.92 -0.24 0.15 16 5 C -0.51 -13.61 8.59 -34.44 -0.30 -13.90 16 6 H 0.06 1.53 7.54 -52.49 -0.40 1.13 16 7 C 0.06 1.68 5.28 -17.82 -0.09 1.59 16 8 N -0.89 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -13.57 5.01 -100.96 -0.51 -14.08 16 14 C 0.11 1.96 0.91 -67.71 -0.06 1.90 16 15 H 0.08 1.51 4.64 -51.93 -0.24 1.27 16 16 C -0.17 -2.81 4.64 -90.62 -0.42 -3.23 16 17 C -0.19 -2.81 10.18 -26.73 -0.27 -3.08 16 18 C -0.18 -3.11 9.77 -26.73 -0.26 -3.38 16 19 C -0.07 -1.09 2.67 -89.50 -0.24 -1.33 16 20 C -0.12 -1.50 5.99 -25.03 -0.15 -1.65 16 21 C -0.12 -1.47 6.91 -24.70 -0.17 -1.64 16 22 C -0.13 -1.66 6.83 -25.07 -0.17 -1.83 16 23 C -0.12 -1.78 5.64 -25.62 -0.14 -1.92 16 24 H 0.03 0.72 7.82 -51.93 -0.41 0.31 16 25 H 0.06 1.10 3.37 -51.93 -0.18 0.92 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 2.36 5.91 -51.93 -0.31 2.05 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.33 6.78 7.80 -39.29 -0.31 6.48 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.12 2.44 5.34 -51.93 -0.28 2.16 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.86 7.74 -51.93 -0.40 0.46 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.66 4.79 -51.93 -0.25 1.41 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -26.09 323.95 -9.89 -35.98 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.63 Total: 10.42 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -2.24 Total: -29.10 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.12 Total: -38.25 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.09 -9.89 -35.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723857461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.747 kcal (2) G-P(sol) polarization free energy of solvation -26.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds