Wall clock time and date at job start Mon Mar 30 2020 07:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 H 1.09008 * 109.46782 * 52.92838 * 3 2 1 5 5 C 1.50692 * 109.47190 * 172.92755 * 3 2 1 6 6 H 1.07999 * 119.99951 * 120.00212 * 5 3 2 7 7 C 1.37880 * 120.00208 * 299.99974 * 5 3 2 8 8 N 1.31510 * 120.00084 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00016 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47379 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47004 * 120.00544 * 9 7 5 12 12 H 1.48510 * 109.47056 * 240.00307 * 9 7 5 13 13 N 1.46892 * 109.47256 * 292.93128 * 3 2 1 14 14 C 1.46904 * 111.00096 * 90.23563 * 13 3 2 15 15 H 1.09002 * 109.47306 * 328.59111 * 14 13 3 16 16 C 1.53001 * 109.47129 * 88.58971 * 14 13 3 17 17 C 1.52996 * 117.51892 * 227.54142 * 16 14 13 18 18 C 1.52995 * 117.50056 * 296.17219 * 16 14 13 19 19 C 1.52999 * 109.47104 * 208.59161 * 14 13 3 20 20 C 1.54270 * 110.03308 * 170.85305 * 19 14 13 21 21 C 1.54966 * 104.15923 * 217.13534 * 20 19 14 22 22 C 1.54891 * 102.77706 * 37.88644 * 21 20 19 23 23 C 1.53867 * 110.03528 * 53.63507 * 19 14 13 24 24 H 1.09003 * 109.47390 * 305.58464 * 1 2 3 25 25 H 1.09006 * 109.47119 * 65.58562 * 1 2 3 26 26 H 1.08999 * 109.47426 * 185.58441 * 1 2 3 27 27 H 1.08994 * 109.47006 * 239.99611 * 2 1 3 28 28 H 1.09001 * 109.46808 * 119.99985 * 2 1 3 29 29 H 0.97001 * 120.00387 * 179.97438 * 8 7 5 30 30 H 1.00896 * 111.00313 * 214.18745 * 13 3 2 31 31 H 1.08998 * 115.54406 * 81.84132 * 16 14 13 32 32 H 1.09002 * 117.49882 * 214.96966 * 17 16 14 33 33 H 1.09003 * 117.49660 * 359.97438 * 17 16 14 34 34 H 1.09000 * 117.49473 * 359.97262 * 18 16 14 35 35 H 1.08999 * 117.50241 * 144.99224 * 18 16 14 36 36 H 1.08999 * 110.01881 * 292.24418 * 19 14 13 37 37 H 1.09002 * 110.48010 * 335.78327 * 20 19 14 38 38 H 1.08999 * 110.48322 * 98.42759 * 20 19 14 39 39 H 1.09003 * 110.71876 * 279.57291 * 21 20 19 40 40 H 1.08995 * 110.92043 * 156.29529 * 21 20 19 41 41 H 1.08999 * 110.48364 * 203.40199 * 22 21 20 42 42 H 1.09001 * 110.59847 * 80.81714 * 22 21 20 43 43 H 1.09003 * 110.03379 * 238.57313 * 23 19 14 44 44 H 1.09002 * 110.03396 * 359.94848 * 23 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5771 1.9915 0.8200 5 6 3.5368 1.4460 0.1749 6 1 4.1683 1.8813 -0.5854 7 6 4.1001 0.8935 1.3057 8 7 3.3312 0.3631 2.2313 9 14 5.9555 0.8973 1.5221 10 1 6.5896 1.5482 0.3477 11 1 6.3086 1.6477 2.7540 12 1 6.4433 -0.5007 1.6371 13 7 1.6946 2.0840 -1.2755 14 6 0.3824 2.7398 -1.1965 15 1 -0.2578 2.1898 -0.5067 16 6 0.5586 4.1745 -0.6949 17 6 -0.3669 4.6499 0.4267 18 6 1.1075 4.3657 0.7203 19 6 -0.2619 2.7601 -2.5841 20 6 -1.7262 3.2344 -2.4799 21 6 -2.4784 2.3751 -3.5273 22 6 -1.7867 0.9952 -3.3988 23 6 -0.3002 1.3372 -3.1684 24 1 -0.3634 0.5980 0.8358 25 1 -0.3634 0.4248 -0.9358 26 1 -0.3634 -1.0228 0.1000 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7274 -0.0260 3.0267 30 1 2.4094 2.7383 -1.5565 31 1 0.8497 4.9041 -1.4505 32 1 -0.6847 5.6924 0.4092 33 1 -1.1019 3.9406 0.8073 34 1 1.3426 3.4693 1.2942 35 1 1.7598 5.2211 0.8959 36 1 0.2983 3.4205 -3.2460 37 1 -2.1177 3.0465 -1.4802 38 1 -1.8027 4.2931 -2.7280 39 1 -2.3437 2.7828 -4.5292 40 1 -3.5376 2.3006 -3.2813 41 1 -1.9081 0.4206 -4.3170 42 1 -2.1873 0.4431 -2.5486 43 1 0.2408 1.3072 -4.1142 44 1 0.1411 0.6322 -2.4638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723857461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:17 Heat of formation + Delta-G solvation = -7.742741 kcal Electronic energy + Delta-G solvation = -20154.608929 eV Core-core repulsion = 17492.084785 eV Total energy + Delta-G solvation = -2662.524144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45188 -37.83186 -36.76514 -34.16334 -32.52492 -30.55711 -29.40760 -27.95818 -25.40761 -24.16444 -23.18261 -21.68282 -21.50286 -20.89858 -20.32264 -18.33955 -17.13874 -16.78755 -16.33304 -15.83056 -15.68022 -15.14756 -14.80550 -14.40013 -14.14205 -13.69257 -13.48767 -13.28442 -13.12672 -12.81864 -12.67659 -12.53542 -12.30223 -12.10318 -11.96251 -11.78291 -11.74013 -11.65442 -11.47699 -11.40445 -11.26235 -11.17418 -10.87354 -10.65367 -10.52891 -10.44463 -8.72841 -8.07135 -6.18925 1.38831 1.41843 1.52012 2.43186 2.97562 3.20610 3.68781 3.72453 3.95619 4.08360 4.11189 4.22524 4.32056 4.47947 4.61162 4.63666 4.69896 4.75870 4.79614 4.86612 4.89466 4.92628 4.96666 4.98963 5.02297 5.11007 5.22437 5.23701 5.27392 5.35216 5.37718 5.47137 5.48832 5.57255 5.61443 5.66537 5.71145 5.83001 5.87301 6.04192 6.38052 6.63319 6.95379 7.15503 7.50536 8.96717 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006897 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.202537 B = 4059.039098 C = 4542.594503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.529 4.529 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.673 5.673 14 C 0.118 3.882 15 H 0.065 0.935 16 C -0.170 4.170 17 C -0.160 4.160 18 C -0.199 4.199 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.024 0.976 28 H 0.055 0.945 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 6.049 -8.569 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.013 0.987 5 C -0.567 4.567 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.301 5.301 14 C 0.007 3.993 15 H 0.084 0.916 16 C -0.190 4.190 17 C -0.197 4.197 18 C -0.236 4.236 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.157 4.157 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.778 5.356 -8.681 14.839 hybrid contribution 1.657 0.486 1.231 2.121 sum -9.120 5.842 -7.450 13.146 Atomic orbital electron populations 1.22043 0.97272 0.99820 1.01197 1.21389 0.93735 0.99495 0.99508 1.19016 0.92906 0.90927 0.85689 0.98748 1.21713 0.93405 1.37640 1.03989 0.93027 1.25593 1.01701 0.95200 0.95803 1.70022 1.35890 1.39998 1.09555 0.85627 0.81343 0.77515 0.77822 1.19373 1.20938 1.20948 1.60775 1.03132 1.34009 1.32226 1.21472 0.91813 0.89536 0.96438 0.91647 1.23113 1.04784 0.99554 0.91520 1.22936 0.92141 1.02359 1.02290 1.22983 0.97605 1.02711 1.00269 1.21644 0.95761 0.96663 0.94742 1.22367 0.93805 0.99661 0.99134 1.22478 0.99091 0.94763 0.99180 1.22402 0.95201 0.97635 1.01145 1.22186 0.96207 0.97038 1.00284 0.95322 0.90345 0.94090 0.95668 0.92618 0.93205 0.85666 0.87519 0.87141 0.89561 0.90750 0.89155 0.91848 0.92405 0.91013 0.90987 0.90886 0.91336 0.92589 0.92849 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 8.37 71.98 0.60 -5.34 16 2 C -0.10 -5.00 5.46 30.59 0.17 -4.84 16 3 C 0.22 10.89 1.82 44.17 0.08 10.97 16 4 H 0.00 -0.26 4.72 -2.38 -0.01 -0.27 16 5 C -0.53 -28.76 8.59 25.60 0.22 -28.54 16 6 H 0.05 2.80 7.54 -2.91 -0.02 2.78 16 7 C 0.02 0.88 5.28 84.66 0.45 1.32 16 8 N -0.91 -52.70 11.29 21.45 0.24 -52.45 16 9 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.67 -27.34 5.01 -473.32 -2.37 -29.71 16 14 C 0.12 3.94 0.91 44.91 0.04 3.98 16 15 H 0.07 2.42 4.64 -2.39 -0.01 2.41 16 16 C -0.17 -5.28 4.64 -10.80 -0.05 -5.33 16 17 C -0.16 -4.51 10.18 30.59 0.31 -4.19 16 18 C -0.20 -7.02 9.77 30.59 0.30 -6.72 16 19 C -0.07 -1.92 2.67 -10.07 -0.03 -1.94 16 20 C -0.11 -2.54 5.99 31.70 0.19 -2.35 16 21 C -0.12 -2.35 6.91 31.91 0.22 -2.13 16 22 C -0.13 -2.96 6.83 31.67 0.22 -2.74 16 23 C -0.12 -3.44 5.64 31.31 0.18 -3.26 16 24 H 0.03 1.17 7.82 -2.39 -0.02 1.15 16 25 H 0.08 2.88 3.37 -2.38 -0.01 2.87 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 3.09 5.91 -2.39 -0.01 3.08 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.33 13.56 7.80 -89.70 -0.70 12.86 16 31 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 2.47 8.07 -2.39 -0.02 2.45 16 34 H 0.07 3.30 5.34 -2.39 -0.01 3.29 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.40 7.74 -2.39 -0.02 1.38 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.07 2.31 4.79 -2.39 -0.01 2.29 16 Total: -1.00 -57.32 323.95 3.06 -54.26 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.27 Total: 32.95 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 2.89 Total: -51.11 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -2.13 Total: -82.16 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -57.32 3.06 -54.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723857461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.513 kcal (2) G-P(sol) polarization free energy of solvation -57.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds