Wall clock time and date at job start Mon Mar 30 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.53002 * 109.47106 * 60.00162 * 4 2 1 6 6 N 1.46899 * 109.47394 * 180.02562 * 5 4 2 7 7 C 1.48538 * 111.00082 * 57.60398 * 6 5 4 8 8 C 1.54934 * 103.22814 * 159.71977 * 7 6 5 9 9 C 1.54590 * 102.92292 * 322.58335 * 8 7 6 10 10 H 1.08999 * 110.30920 * 263.04284 * 9 8 7 11 11 C 1.50704 * 110.39168 * 140.91485 * 9 8 7 12 12 H 1.08000 * 119.99992 * 244.23296 * 11 9 8 13 13 C 1.37875 * 119.99948 * 64.23527 * 11 9 8 14 14 N 1.31520 * 119.99999 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00081 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47276 * 60.00176 * 15 13 11 17 17 H 1.48504 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47019 * 300.00020 * 15 13 11 19 19 C 1.47902 * 111.00154 * 174.99558 * 6 5 4 20 20 C 1.52996 * 109.47346 * 59.99981 * 5 4 2 21 21 C 1.53000 * 109.47328 * 300.00400 * 20 5 4 22 22 H 1.09004 * 109.46724 * 300.00183 * 21 20 5 23 23 C 1.52996 * 109.47518 * 179.97438 * 21 20 5 24 24 C 1.53002 * 109.47233 * 59.99531 * 21 20 5 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 30 30 H 1.09000 * 109.46986 * 300.00235 * 5 4 2 31 31 H 1.09007 * 110.66598 * 278.15720 * 7 6 5 32 32 H 1.09000 * 110.66866 * 41.28406 * 7 6 5 33 33 H 1.09005 * 110.72394 * 204.22453 * 8 7 6 34 34 H 1.09004 * 110.87172 * 81.01628 * 8 7 6 35 35 H 0.96998 * 120.00396 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.91966 * 333.51411 * 19 6 5 37 37 H 1.09004 * 109.91550 * 94.60597 * 19 6 5 38 38 H 1.09000 * 109.46870 * 60.00183 * 20 5 4 39 39 H 1.09001 * 109.47372 * 180.02562 * 20 5 4 40 40 H 1.09001 * 109.46993 * 60.00304 * 23 21 20 41 41 H 1.09000 * 109.47380 * 179.97438 * 23 21 20 42 42 H 1.08996 * 109.47134 * 300.00498 * 23 21 20 43 43 H 1.08993 * 109.47662 * 180.02562 * 24 21 20 44 44 H 1.09000 * 109.46986 * 60.00203 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.5301 -2.1638 1.2491 6 7 2.0193 -2.8562 2.4488 7 6 1.5905 -2.1499 3.6831 8 6 1.7128 -3.2408 4.7765 9 6 1.2514 -4.5202 4.0415 10 1 0.2005 -4.7190 4.2516 11 6 2.0981 -5.6968 4.4536 12 1 2.7240 -6.1927 3.7264 13 6 2.0736 -6.1402 5.7588 14 7 1.3110 -5.5367 6.6442 15 14 3.1226 -7.5991 6.2695 16 1 4.5539 -7.2903 6.0224 17 1 2.9184 -7.8739 7.7145 18 1 2.7298 -8.7924 5.4778 19 6 1.4492 -4.2175 2.5446 20 6 2.0401 -2.8850 -0.0002 21 6 1.5301 -2.1637 -1.2494 22 1 0.4400 -2.1637 -1.2493 23 6 2.0405 -2.8845 -2.4987 24 6 2.0400 -0.7212 -1.2494 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.1300 -0.7217 1.2489 29 1 1.6767 -0.2074 2.1392 30 1 0.4401 -2.1638 1.2491 31 1 2.2552 -1.3132 3.8983 32 1 0.5589 -1.8096 3.5929 33 1 1.0546 -3.0201 5.6169 34 1 2.7450 -3.3399 5.1124 35 1 1.2940 -5.8483 7.5626 36 1 0.4901 -4.2557 2.0281 37 1 2.1368 -4.9398 2.1044 38 1 3.1301 -2.8849 -0.0002 39 1 1.6764 -3.9125 -0.0004 40 1 1.6775 -3.9123 -2.4989 41 1 1.6768 -2.3709 -3.3886 42 1 3.1305 -2.8842 -2.4984 43 1 1.6764 -0.2072 -2.1390 44 1 3.1300 -0.7211 -1.2494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397648607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:40 Heat of formation + Delta-G solvation = -29.684864 kcal Electronic energy + Delta-G solvation = -19662.750902 eV Core-core repulsion = 16999.275277 eV Total energy + Delta-G solvation = -2663.475625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71091 -37.24437 -33.32203 -33.02018 -31.24633 -28.42429 -27.74632 -26.71659 -26.21359 -24.23468 -21.71851 -21.27889 -19.67210 -19.10431 -18.55045 -16.43044 -15.82966 -14.98286 -14.66434 -14.46948 -14.04388 -13.83525 -13.68413 -13.35391 -12.70819 -12.61944 -12.27703 -12.05359 -11.75881 -11.70425 -11.55474 -11.44008 -10.99337 -10.90304 -10.82626 -10.72929 -10.63173 -10.55793 -10.35098 -10.12038 -9.82895 -9.63788 -9.58508 -9.19617 -8.73664 -8.34712 -7.59528 -5.96221 -3.97746 3.36249 3.40345 3.43558 4.48124 4.51700 4.71787 4.77290 5.07361 5.14230 5.26211 5.35071 5.38653 5.50622 5.52052 5.63937 5.69188 5.75183 5.79512 5.84140 5.91951 5.96019 5.99126 6.05936 6.13479 6.16503 6.27534 6.30352 6.31872 6.34130 6.39162 6.47142 6.50531 6.67476 6.71669 6.95386 7.19742 7.28281 7.54769 7.71098 7.92742 7.96831 8.09750 8.50372 9.03499 9.65281 11.13946 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034454 B = 0.005141 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.483541 B = 5444.586402 C = 5968.130927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.106 4.106 5 C 0.077 3.923 6 N -0.513 5.513 7 C 0.032 3.968 8 C -0.092 4.092 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.506 4.506 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.048 3.952 20 C -0.103 4.103 21 C -0.093 4.093 22 H 0.069 0.931 23 C -0.145 4.145 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.259 0.741 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 10.115 -14.074 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.144 4.144 5 C -0.032 4.032 6 N -0.237 5.237 7 C -0.096 4.096 8 C -0.130 4.130 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.544 4.544 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.079 4.079 20 C -0.141 4.141 21 C -0.112 4.112 22 H 0.087 0.913 23 C -0.203 4.203 24 C -0.144 4.144 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.012 10.079 -13.924 17.190 hybrid contribution -0.379 -0.754 0.447 0.955 sum -0.391 9.325 -13.477 16.393 Atomic orbital electron populations 1.21947 0.95649 1.02151 1.01065 1.21094 0.95723 0.98837 0.95255 0.91551 1.21608 1.01172 0.94791 0.96818 1.21790 0.96476 0.93453 0.91463 1.64758 1.55464 1.02814 1.00641 1.23299 0.96640 0.97848 0.91802 1.22395 1.01412 0.93838 0.95396 1.19484 0.96811 0.93772 0.87854 0.95412 1.21144 1.25105 1.13518 0.94644 0.92599 1.24974 0.95538 0.96776 0.96761 1.69961 1.39093 1.40924 1.03140 0.86689 0.81033 0.83149 0.77302 1.20268 1.21425 1.20367 1.23039 0.95567 0.89244 1.00067 1.21587 1.01393 0.98716 0.92411 1.21170 1.00322 0.94776 0.94918 0.91308 1.21812 1.01177 1.00212 0.97079 1.21612 1.00546 0.95210 0.97074 0.92969 0.92028 0.93187 0.91392 0.92126 0.94641 0.91961 0.95534 0.92486 0.92077 0.93107 0.96510 0.91336 0.91375 0.92024 0.92759 0.93118 0.92747 0.92500 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.50 37.16 0.32 -1.31 16 2 C -0.09 -1.00 3.19 -90.62 -0.29 -1.29 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -1.45 4.53 -26.73 -0.12 -1.57 16 5 C 0.08 1.21 1.38 -67.71 -0.09 1.12 16 6 N -0.51 -9.97 5.11 -222.49 -1.14 -11.11 16 7 C 0.03 0.63 5.31 -1.90 -0.01 0.62 16 8 C -0.09 -2.19 5.75 -24.87 -0.14 -2.33 16 9 C 0.04 1.01 2.87 -90.42 -0.26 0.75 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.51 -14.09 8.38 -34.44 -0.29 -14.38 16 12 H 0.06 1.55 7.35 -52.49 -0.39 1.16 16 13 C 0.06 1.71 5.34 -17.82 -0.10 1.61 16 14 N -0.89 -25.95 12.63 55.43 0.70 -25.25 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.05 1.04 5.20 -2.75 -0.01 1.03 16 20 C -0.10 -1.47 4.47 -26.73 -0.12 -1.59 16 21 C -0.09 -1.06 2.45 -90.62 -0.22 -1.29 16 22 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 23 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 24 C -0.11 -1.13 4.73 -26.73 -0.13 -1.25 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.85 6.88 -51.93 -0.36 0.49 16 30 H 0.04 0.59 6.24 -51.93 -0.32 0.26 16 31 H 0.06 1.14 7.65 -51.92 -0.40 0.74 16 32 H 0.03 0.50 8.02 -51.93 -0.42 0.09 16 33 H 0.06 1.42 8.12 -51.93 -0.42 0.99 16 34 H 0.06 1.57 7.86 -51.93 -0.41 1.16 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.02 0.34 7.65 -51.93 -0.40 -0.05 16 37 H 0.07 1.53 7.40 -51.93 -0.38 1.15 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.94 7.35 -51.93 -0.38 0.56 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -28.13 323.52 -9.95 -38.08 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.24 Total: -2.16 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -1.12 Total: -21.03 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.44 Total: -36.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.13 -9.95 -38.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397648607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.396 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds