Wall clock time and date at job start Mon Mar 30 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35709 * 117.00156 * 2 1 4 4 C 1.39015 * 119.89249 * 359.97438 * 3 2 1 5 5 C 1.37620 * 120.14264 * 179.97438 * 4 3 2 6 6 C 1.40030 * 119.92714 * 0.02562 * 5 4 3 7 7 C 1.46853 * 120.10768 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99889 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.40041 * 119.78328 * 0.24765 * 6 5 4 20 20 C 1.37792 * 119.85431 * 359.46986 * 19 6 5 21 21 F 1.35103 * 119.96167 * 180.27601 * 20 19 6 22 22 H 1.09002 * 109.46865 * 60.00061 * 1 2 3 23 23 H 1.09002 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47005 * 300.00164 * 1 2 3 25 25 H 1.07999 * 119.92288 * 0.02972 * 4 3 2 26 26 H 1.08001 * 120.03488 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47152 * 59.99857 * 9 7 6 28 28 H 1.09001 * 109.46980 * 299.99958 * 9 7 6 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.07516 * 179.75080 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2859 2.3736 -0.0005 5 6 1.9054 3.6025 0.0000 6 6 3.3035 3.6801 0.0005 7 6 3.9687 4.9894 0.0005 8 8 3.3068 6.0059 -0.0004 9 6 5.4735 5.0700 0.0017 10 6 5.9056 6.5377 0.0021 11 6 7.4105 6.6183 0.0026 12 1 7.9997 5.7133 0.0031 13 6 8.0350 7.8476 0.0025 14 7 7.3174 8.9497 0.0014 15 14 9.9003 7.9475 0.0039 16 1 10.4695 6.5759 0.0044 17 1 10.3581 8.6725 -1.2086 18 1 10.3562 8.6736 1.2164 19 6 4.0654 2.5051 -0.0047 20 6 3.4359 1.2794 0.0007 21 9 4.1688 0.1444 0.0013 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2076 2.3137 -0.0005 26 1 1.3138 4.5061 -0.0008 27 1 5.8646 4.5760 -0.8878 28 1 5.8631 4.5767 0.8922 29 1 5.5160 7.0314 -0.8882 30 1 5.5146 7.0314 0.8917 31 1 7.7567 9.8145 0.0010 32 1 5.1440 2.5594 -0.0084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041234559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:33 Heat of formation + Delta-G solvation = -104.496794 kcal Electronic energy + Delta-G solvation = -17446.949125 eV Core-core repulsion = 14287.384254 eV Total energy + Delta-G solvation = -3159.564870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.87041 -40.37330 -39.07915 -37.04210 -33.54485 -31.66688 -30.75666 -30.30911 -27.81820 -26.00263 -23.60550 -22.85055 -21.30733 -19.29849 -18.59886 -17.12764 -16.91545 -16.42396 -16.31017 -15.35584 -15.26335 -14.92634 -14.65722 -14.53659 -14.42054 -13.96556 -13.16174 -12.67646 -12.57248 -12.21251 -12.20615 -12.15048 -11.45217 -11.29550 -11.12020 -10.95152 -10.58562 -9.99339 -9.75955 -9.18333 -9.17657 -8.94501 -8.41397 -8.33539 -5.97837 -4.01969 0.59913 0.97046 2.58354 2.78581 3.32420 3.39766 3.43262 3.62051 3.97763 4.32773 4.43270 4.49527 4.63846 4.77789 4.88024 5.03882 5.10128 5.27458 5.37540 5.50939 5.76563 5.79617 5.95459 6.14260 6.19900 6.35159 6.36922 6.92506 6.96783 7.70976 7.80920 8.01671 8.03005 8.40608 9.05985 9.62054 11.13206 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.004094 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.594061 B = 6837.477319 C = 7478.321404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.116 3.884 4 C -0.197 4.197 5 C -0.035 4.035 6 C -0.168 4.168 7 C 0.392 3.608 8 O -0.446 6.446 9 C -0.158 4.158 10 C 0.030 3.970 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.068 4.068 20 C 0.056 3.944 21 F -0.131 7.131 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 -17.226 -0.008 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.069 3.931 4 C -0.216 4.216 5 C -0.054 4.054 6 C -0.169 4.169 7 C 0.269 3.731 8 O -0.321 6.321 9 C -0.195 4.195 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.087 4.087 20 C 0.036 3.964 21 F -0.110 7.110 22 H 0.078 0.922 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.821 -16.738 -0.009 21.707 hybrid contribution 0.884 -0.069 0.001 0.887 sum -12.937 -16.807 -0.008 21.209 Atomic orbital electron populations 1.23165 0.77698 1.04373 1.01782 1.86087 1.21960 1.25946 1.88077 1.19296 0.90883 0.85585 0.97338 1.21089 1.00397 0.91193 1.08932 1.21334 0.93842 0.97734 0.92465 1.20711 0.93976 0.95574 1.06679 1.22867 0.93001 0.86170 0.71076 1.90510 1.68467 1.37546 1.35539 1.22189 0.90100 1.04427 1.02833 1.18958 0.95726 0.87545 0.98443 1.21262 0.91655 0.92332 1.51167 0.92451 1.25032 0.98260 0.95860 0.95276 1.69997 1.35116 0.97469 1.50376 0.86536 0.85766 0.78100 0.77582 1.19689 1.21022 1.21016 1.21432 1.01824 0.89239 0.96155 1.16807 0.85860 0.83023 1.10699 1.91514 1.76548 1.48458 1.94459 0.92189 0.87861 0.92196 0.84087 0.83876 0.89482 0.89484 0.95899 0.95899 0.92999 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.36 10.34 -18.83 -0.19 -3.55 16 3 C 0.12 1.38 6.70 -38.92 -0.26 1.12 16 4 C -0.20 -2.08 9.01 -39.52 -0.36 -2.44 16 5 C -0.04 -0.45 9.59 -39.14 -0.38 -0.82 16 6 C -0.17 -2.46 5.87 -105.07 -0.62 -3.08 16 7 C 0.39 7.21 7.11 -30.82 -0.22 6.99 16 8 O -0.45 -9.66 15.96 5.54 0.09 -9.57 16 9 C -0.16 -3.13 4.24 -27.88 -0.12 -3.24 16 10 C 0.03 0.80 4.26 -27.88 -0.12 0.68 16 11 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.07 -0.89 9.43 -39.07 -0.37 -1.26 16 20 C 0.06 0.74 7.30 -39.37 -0.29 0.45 16 21 F -0.13 -1.82 17.10 2.25 0.04 -1.79 16 22 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 23 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 25 H 0.14 1.04 6.27 -52.49 -0.33 0.71 16 26 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 27 H 0.09 1.57 8.08 -51.93 -0.42 1.15 16 28 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 29 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.16 1.87 7.04 -52.49 -0.37 1.50 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -33.25 288.24 -5.69 -38.94 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -3.54 Total: -4.45 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.14 Total: -14.01 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.11 Total: -13.12 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.25 -5.69 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041234559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.557 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds