Wall clock time and date at job start Mon Mar 30 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35709 * 117.00156 * 2 1 4 4 C 1.39015 * 119.89249 * 359.97438 * 3 2 1 5 5 C 1.37620 * 120.14264 * 179.97438 * 4 3 2 6 6 C 1.40030 * 119.92714 * 0.02562 * 5 4 3 7 7 C 1.46853 * 120.10768 * 179.97438 * 6 5 4 8 8 O 1.21300 * 120.00042 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99889 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48498 * 109.46942 * 239.99938 * 15 13 11 19 19 C 1.40041 * 119.78328 * 0.24765 * 6 5 4 20 20 C 1.37792 * 119.85431 * 359.46986 * 19 6 5 21 21 F 1.35103 * 119.96167 * 180.27601 * 20 19 6 22 22 H 1.09002 * 109.46865 * 60.00061 * 1 2 3 23 23 H 1.09002 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47005 * 300.00164 * 1 2 3 25 25 H 1.07999 * 119.92288 * 0.02972 * 4 3 2 26 26 H 1.08001 * 120.03488 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47152 * 59.99857 * 9 7 6 28 28 H 1.09001 * 109.46980 * 299.99958 * 9 7 6 29 29 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 32 32 H 1.08001 * 120.07516 * 179.75080 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2859 2.3736 -0.0005 5 6 1.9054 3.6025 0.0000 6 6 3.3035 3.6801 0.0005 7 6 3.9687 4.9894 0.0005 8 8 3.3068 6.0059 -0.0004 9 6 5.4735 5.0700 0.0017 10 6 5.9056 6.5377 0.0021 11 6 7.4105 6.6183 0.0026 12 1 7.9997 5.7133 0.0031 13 6 8.0350 7.8476 0.0025 14 7 7.3174 8.9497 0.0014 15 14 9.9003 7.9475 0.0039 16 1 10.4695 6.5759 0.0044 17 1 10.3581 8.6725 -1.2086 18 1 10.3562 8.6736 1.2164 19 6 4.0654 2.5051 -0.0047 20 6 3.4359 1.2794 0.0007 21 9 4.1688 0.1444 0.0013 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2076 2.3137 -0.0005 26 1 1.3138 4.5061 -0.0008 27 1 5.8646 4.5760 -0.8878 28 1 5.8631 4.5767 0.8922 29 1 5.5160 7.0314 -0.8882 30 1 5.5146 7.0314 0.8917 31 1 7.7567 9.8145 0.0010 32 1 5.1440 2.5594 -0.0084 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041234559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:33 Heat of formation + Delta-G solvation = -125.314054 kcal Electronic energy + Delta-G solvation = -17447.851829 eV Core-core repulsion = 14287.384254 eV Total energy + Delta-G solvation = -3160.467574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88911 -41.37037 -40.33502 -38.11009 -35.60477 -33.31465 -31.86774 -31.55208 -28.54180 -27.78173 -25.02655 -23.86139 -22.89593 -20.70004 -19.49551 -18.71730 -17.92967 -17.86373 -17.25986 -16.75010 -16.41246 -16.30466 -16.07345 -15.82240 -15.50900 -15.29827 -14.33695 -14.22529 -13.97803 -13.64377 -13.27872 -13.13332 -12.93564 -12.84812 -12.45065 -12.24171 -12.11966 -11.92164 -11.65064 -11.29185 -10.57199 -10.56349 -10.12980 -9.38131 -8.18225 -6.31496 -0.48788 0.01607 1.32794 1.42696 1.43449 1.56965 2.05015 2.41985 2.52627 2.96768 3.15023 3.15539 3.55773 3.77366 4.03905 4.28881 4.32975 4.38667 4.39500 4.53922 4.56300 4.67480 4.74467 4.83729 4.97286 5.07716 5.31976 5.42309 5.49908 5.63117 5.84676 6.13990 6.17996 6.60823 6.88153 7.38628 8.94455 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.004094 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.594061 B = 6837.477319 C = 7478.321404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.128 3.872 4 C -0.184 4.184 5 C -0.032 4.032 6 C -0.188 4.188 7 C 0.399 3.601 8 O -0.493 6.493 9 C -0.152 4.152 10 C 0.034 3.966 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.254 1.254 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.060 4.060 20 C 0.038 3.962 21 F -0.138 7.138 22 H 0.075 0.925 23 H 0.124 0.876 24 H 0.075 0.925 25 H 0.179 0.821 26 H 0.146 0.854 27 H 0.109 0.891 28 H 0.109 0.891 29 H -0.015 1.015 30 H -0.015 1.015 31 H 0.263 0.737 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.826 -19.655 -0.008 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.080 3.920 4 C -0.203 4.203 5 C -0.050 4.050 6 C -0.190 4.190 7 C 0.280 3.720 8 O -0.371 6.371 9 C -0.189 4.189 10 C -0.003 4.003 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.796 3.204 16 H -0.178 1.178 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.078 4.078 20 C 0.018 3.982 21 F -0.117 7.117 22 H 0.093 0.907 23 H 0.142 0.858 24 H 0.093 0.907 25 H 0.196 0.804 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.071 0.929 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.065 -19.213 -0.009 23.811 hybrid contribution 0.820 0.573 0.000 1.000 sum -13.245 -18.641 -0.009 22.867 Atomic orbital electron populations 1.23572 0.75060 1.06391 1.03228 1.86094 1.24676 1.25384 1.87411 1.19437 0.90620 0.86517 0.95432 1.21348 1.02071 0.89554 1.07279 1.21454 0.93023 0.98898 0.91671 1.20242 0.94885 0.93589 1.10243 1.22888 0.92247 0.87357 0.69510 1.90498 1.68927 1.39360 1.38284 1.22059 0.91890 1.00028 1.04920 1.18775 0.95251 0.91394 0.94853 1.21760 0.92623 0.93103 1.50523 0.90750 1.26107 1.04128 0.95446 0.94704 1.70163 1.37667 0.98253 1.51632 0.85304 0.78687 0.78893 0.77561 1.17770 1.20626 1.20616 1.21423 1.02262 0.88834 0.95321 1.16930 0.86656 0.82710 1.11930 1.91494 1.76843 1.48677 1.94645 0.90681 0.85810 0.90690 0.80393 0.83660 0.87312 0.87324 0.99645 0.99641 0.92851 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -6.04 10.34 -90.30 -0.93 -6.98 16 3 C 0.13 2.70 6.70 22.70 0.15 2.85 16 4 C -0.18 -3.31 9.01 22.31 0.20 -3.11 16 5 C -0.03 -0.76 9.59 22.56 0.22 -0.55 16 6 C -0.19 -5.38 5.87 -20.15 -0.12 -5.49 16 7 C 0.40 15.00 7.11 27.94 0.20 15.20 16 8 O -0.49 -22.36 15.96 -3.09 -0.05 -22.41 16 9 C -0.15 -6.06 4.24 29.85 0.13 -5.93 16 10 C 0.03 1.89 4.26 29.85 0.13 2.02 16 11 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 12 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 13 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 14 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 15 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 16 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.06 -1.49 9.43 22.60 0.21 -1.28 16 20 C 0.04 0.92 7.30 22.41 0.16 1.08 16 21 F -0.14 -3.63 17.10 44.97 0.77 -2.86 16 22 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 23 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 25 H 0.18 1.83 6.27 -2.91 -0.02 1.81 16 26 H 0.15 3.39 7.64 -2.91 -0.02 3.37 16 27 H 0.11 3.84 8.08 -2.39 -0.02 3.82 16 28 H 0.11 3.84 8.09 -2.39 -0.02 3.82 16 29 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 30 H -0.01 -0.91 8.10 -2.39 -0.02 -0.93 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.17 3.70 7.04 -2.91 -0.02 3.68 16 Total: -1.00 -74.71 288.24 6.32 -68.39 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.13 Total: 0.76 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.09 Total: -24.53 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.28 Total: -58.82 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.98 Total: -29.39 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.77 Total: -2.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -74.71 6.32 -68.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041234559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.922 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds