Wall clock time and date at job start Mon Mar 30 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47456 * 179.97438 * 15 14 12 17 17 C 1.38240 * 119.97523 * 269.72983 * 16 15 14 18 18 C 1.38200 * 120.02466 * 179.72684 * 17 16 15 19 19 C 1.38461 * 119.97381 * 0.56791 * 18 17 16 20 20 F 1.35096 * 120.02503 * 179.68667 * 19 18 17 21 21 C 1.38461 * 119.94609 * 359.70588 * 19 18 17 22 22 C 1.38198 * 119.97788 * 0.02562 * 21 19 18 23 23 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 24 24 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 26 26 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 27 27 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 28 28 H 1.09003 * 109.46754 * 60.00412 * 15 14 12 29 29 H 1.08004 * 119.99040 * 359.97438 * 17 16 15 30 30 H 1.08001 * 120.01381 * 180.25503 * 18 17 16 31 31 H 1.08004 * 120.00881 * 179.97438 * 21 19 18 32 32 H 1.07993 * 119.98987 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8640 17 6 0.5750 -0.7245 -5.4509 18 6 0.1447 -0.1194 -6.6165 19 6 0.9095 0.8749 -7.2028 20 9 0.4930 1.4627 -8.3456 21 6 2.1016 1.2659 -6.6170 22 6 2.5271 0.6632 -5.4484 23 1 -0.3634 0.4035 0.9451 24 1 -0.3633 0.6169 -0.8220 25 1 -0.3634 -1.0202 -0.1232 26 1 1.8988 -1.9133 3.4362 27 1 3.3171 -0.9847 -3.5565 28 1 1.8641 -2.0129 -3.5568 29 1 -0.0189 -1.5037 -4.9962 30 1 -0.7852 -0.4254 -7.0726 31 1 2.6991 2.0411 -7.0737 32 1 3.4571 0.9677 -4.9916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049818104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:31 Heat of formation + Delta-G solvation = -116.945985 kcal Electronic energy + Delta-G solvation = -17587.890920 eV Core-core repulsion = 14427.786212 eV Total energy + Delta-G solvation = -3160.104708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.11973 -39.96490 -39.03278 -35.89051 -33.95994 -31.94207 -31.38685 -31.10669 -26.41393 -24.91434 -23.29788 -23.06783 -21.54062 -19.70799 -17.91206 -17.50045 -16.74486 -16.67348 -16.31355 -15.80041 -15.52429 -15.00732 -14.23407 -13.82485 -13.71160 -13.61532 -13.05370 -12.89905 -12.51647 -12.40013 -11.88862 -11.67600 -11.41643 -11.28042 -11.13597 -10.56438 -10.31133 -10.21613 -9.89373 -9.42144 -9.34393 -9.03352 -8.82115 -8.25418 -6.57424 -4.14490 0.80532 1.00243 3.08174 3.11663 3.34858 3.39990 3.56395 3.73029 4.01281 4.44276 4.46368 4.58254 4.67655 4.97039 5.02828 5.13177 5.38193 5.42674 5.68111 5.72699 5.86460 5.89315 5.97721 6.19410 6.29842 6.42086 6.48875 6.62691 6.82492 7.04194 7.18955 7.79019 8.36940 8.68930 8.91501 9.51679 10.82880 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.004335 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.883094 B = 6457.033267 C = 6709.048220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 H 0.055 0.945 4 C -0.609 4.609 5 H 0.077 0.923 6 C 0.042 3.958 7 N -0.891 5.891 8 Si 1.032 2.968 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.471 3.529 13 O -0.507 6.507 14 O -0.362 6.362 15 C 0.102 3.898 16 C -0.096 4.096 17 C -0.067 4.067 18 C -0.156 4.156 19 C 0.100 3.900 20 F -0.141 7.141 21 C -0.157 4.157 22 C -0.067 4.067 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.272 0.728 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.384 4.113 -19.639 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.073 0.927 4 C -0.646 4.646 5 H 0.095 0.905 6 C -0.165 4.165 7 N -0.523 5.523 8 Si 0.859 3.141 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.393 6.393 14 O -0.281 6.281 15 C 0.028 3.972 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.175 4.175 19 C 0.081 3.919 20 F -0.120 7.120 21 C -0.175 4.175 22 C -0.086 4.086 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.439 4.985 -18.528 19.341 hybrid contribution 0.324 -1.253 -1.451 1.945 sum -2.115 3.732 -19.979 20.435 Atomic orbital electron populations 1.22078 0.96102 1.00682 1.00921 1.19049 0.94356 0.96994 0.88119 0.92721 1.21905 1.41599 1.11669 0.89396 0.90519 1.25699 0.93237 1.05818 0.91752 1.70831 1.43034 1.06635 1.31772 0.84222 0.77402 0.75897 0.76610 1.20706 1.20723 1.19981 1.24837 0.76825 0.83317 0.83539 1.90529 1.35760 1.26359 1.86605 1.86682 1.70484 1.55864 1.15070 1.21618 0.99053 0.94910 0.81630 1.19711 0.95856 0.98143 0.95930 1.20994 0.94779 0.98832 0.93935 1.21134 1.01125 0.97627 0.97633 1.17769 0.94908 0.95051 0.84159 1.91497 1.90123 1.82847 1.47513 1.21134 0.96217 1.02589 0.97588 1.20996 0.99827 0.93819 0.93914 0.91739 0.94401 0.93466 0.91767 0.90589 0.90634 0.84617 0.84515 0.84511 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.85 37.16 0.33 -2.65 16 2 C 0.03 0.82 2.34 -92.92 -0.22 0.61 16 3 H 0.06 1.25 6.72 -51.93 -0.35 0.90 16 4 C -0.61 -17.23 8.57 -34.44 -0.30 -17.52 16 5 H 0.08 2.43 7.02 -52.49 -0.37 2.06 16 6 C 0.04 1.18 5.19 -17.82 -0.09 1.09 16 7 N -0.89 -26.85 13.70 55.43 0.76 -26.09 16 8 Si 1.03 23.94 26.45 -169.99 -4.50 19.45 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -5.77 6.15 56.52 0.35 -5.42 16 12 C 0.47 10.60 7.24 36.01 0.26 10.86 16 13 O -0.51 -12.72 15.22 -18.75 -0.29 -13.00 16 14 O -0.36 -6.72 10.13 -39.25 -0.40 -7.12 16 15 C 0.10 1.50 5.59 36.01 0.20 1.70 16 16 C -0.10 -1.17 5.52 -104.62 -0.58 -1.75 16 17 C -0.07 -0.73 9.70 -39.59 -0.38 -1.12 16 18 C -0.16 -1.58 10.03 -39.51 -0.40 -1.97 16 19 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 20 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 21 C -0.16 -1.58 10.03 -39.51 -0.40 -1.97 16 22 C -0.07 -0.73 9.70 -39.59 -0.38 -1.12 16 23 H 0.06 1.40 5.48 -51.93 -0.28 1.11 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 26 H 0.27 8.24 8.73 -40.82 -0.36 7.89 16 27 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 29 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 285.79 15.07 4.31 4.31 Total: -1.00 -31.43 285.79 -5.90 -37.33 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.58 Total: -0.28 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.24 Total: -13.06 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.76 Total: -26.09 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.68 Total: -20.12 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.50 Total: 19.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.43 -5.90 -37.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049818104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.619 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds