Wall clock time and date at job start Mon Mar 30 2020 06:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47456 * 179.97438 * 15 14 12 17 17 C 1.38240 * 119.97523 * 269.72983 * 16 15 14 18 18 C 1.38200 * 120.02466 * 179.72684 * 17 16 15 19 19 C 1.38461 * 119.97381 * 0.56791 * 18 17 16 20 20 F 1.35096 * 120.02503 * 179.68667 * 19 18 17 21 21 C 1.38461 * 119.94609 * 359.70588 * 19 18 17 22 22 C 1.38198 * 119.97788 * 0.02562 * 21 19 18 23 23 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 24 24 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 25 25 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 26 26 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 27 27 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 28 28 H 1.09003 * 109.46754 * 60.00412 * 15 14 12 29 29 H 1.08004 * 119.99040 * 359.97438 * 17 16 15 30 30 H 1.08001 * 120.01381 * 180.25503 * 18 17 16 31 31 H 1.08004 * 120.00881 * 179.97438 * 21 19 18 32 32 H 1.07993 * 119.98987 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8640 17 6 0.5750 -0.7245 -5.4509 18 6 0.1447 -0.1194 -6.6165 19 6 0.9095 0.8749 -7.2028 20 9 0.4930 1.4627 -8.3456 21 6 2.1016 1.2659 -6.6170 22 6 2.5271 0.6632 -5.4484 23 1 -0.3634 0.4035 0.9451 24 1 -0.3633 0.6169 -0.8220 25 1 -0.3634 -1.0202 -0.1232 26 1 1.8988 -1.9133 3.4362 27 1 3.3171 -0.9847 -3.5565 28 1 1.8641 -2.0129 -3.5568 29 1 -0.0189 -1.5037 -4.9962 30 1 -0.7852 -0.4254 -7.0726 31 1 2.6991 2.0411 -7.0737 32 1 3.4571 0.9677 -4.9916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049818104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:30 Heat of formation + Delta-G solvation = -135.121565 kcal Electronic energy + Delta-G solvation = -17588.679072 eV Core-core repulsion = 14427.786212 eV Total energy + Delta-G solvation = -3160.892860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.95123 -41.50745 -40.04625 -37.49575 -35.95457 -33.44970 -32.63250 -32.17815 -27.55659 -26.87571 -24.79420 -24.09502 -22.51204 -21.48798 -19.56739 -18.73146 -18.42077 -17.83475 -17.59680 -16.87905 -16.63134 -16.30846 -15.52110 -15.16900 -14.92923 -14.59551 -14.49320 -14.39056 -14.05189 -13.69885 -13.41858 -13.20095 -13.05151 -12.61482 -12.37194 -12.08422 -12.05709 -11.68503 -11.64257 -11.17038 -11.10151 -10.41590 -10.12791 -9.74088 -8.83366 -6.41018 -0.08212 0.21802 1.34665 1.52461 1.59220 1.76155 1.85087 2.52514 2.65424 2.99171 3.20361 3.56193 3.64373 3.90866 4.01732 4.09528 4.24822 4.40623 4.41625 4.48447 4.63062 4.86121 4.88770 4.91711 5.07806 5.08766 5.15322 5.35350 5.44008 5.48069 5.78233 5.82465 6.03757 6.55541 6.96578 7.35454 8.56073 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.039378 B = 0.004335 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.883094 B = 6457.033267 C = 6709.048220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.024 3.976 3 H 0.077 0.923 4 C -0.619 4.619 5 H 0.024 0.976 6 C -0.006 4.006 7 N -0.923 5.923 8 Si 1.075 2.925 9 H -0.287 1.287 10 H -0.262 1.262 11 H -0.231 1.231 12 C 0.477 3.523 13 O -0.545 6.545 14 O -0.353 6.353 15 C 0.099 3.901 16 C -0.112 4.112 17 C -0.070 4.070 18 C -0.155 4.155 19 C 0.093 3.907 20 F -0.144 7.144 21 C -0.155 4.155 22 C -0.070 4.070 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.254 0.746 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.147 0.853 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 6.511 -21.699 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.094 0.906 4 C -0.656 4.656 5 H 0.042 0.958 6 C -0.206 4.206 7 N -0.556 5.556 8 Si 0.894 3.106 9 H -0.212 1.212 10 H -0.186 1.186 11 H -0.155 1.155 12 C 0.322 3.678 13 O -0.434 6.434 14 O -0.270 6.270 15 C 0.026 3.974 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.173 4.173 19 C 0.074 3.926 20 F -0.122 7.122 21 C -0.173 4.173 22 C -0.088 4.088 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.176 0.824 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.553 7.380 -20.642 22.208 hybrid contribution 0.709 -2.083 -0.956 2.399 sum -2.844 5.297 -21.599 22.420 Atomic orbital electron populations 1.21965 0.93662 1.01102 1.02316 1.19027 0.96159 0.97342 0.86995 0.90587 1.21945 1.41295 1.10220 0.92174 0.95772 1.27306 0.92103 1.10025 0.91155 1.70972 1.45912 1.05775 1.32972 0.83720 0.79771 0.69988 0.77137 1.21237 1.18646 1.15475 1.24499 0.76067 0.82505 0.84701 1.90522 1.37489 1.27982 1.87401 1.86617 1.69982 1.55771 1.14640 1.21880 0.99353 0.95070 0.81124 1.19599 0.97114 0.99413 0.95137 1.21149 0.94417 0.99065 0.94195 1.21344 1.01768 0.97060 0.97164 1.17991 0.95294 0.95219 0.84134 1.91495 1.90173 1.82904 1.47668 1.21350 0.96143 1.02707 0.97110 1.21159 1.00142 0.93339 0.94155 0.91991 0.90583 0.94298 0.93753 0.90310 0.90493 0.83526 0.82462 0.82411 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.85 71.98 0.64 -4.66 16 2 C 0.02 1.13 2.34 -12.28 -0.03 1.10 16 3 H 0.08 3.23 6.72 -2.39 -0.02 3.22 16 4 C -0.62 -35.82 8.57 25.60 0.22 -35.60 16 5 H 0.02 1.61 7.02 -2.91 -0.02 1.59 16 6 C -0.01 -0.36 5.19 84.66 0.44 0.08 16 7 N -0.92 -57.36 13.70 21.45 0.29 -57.06 16 8 Si 1.08 46.52 26.45 68.60 1.81 48.33 16 9 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.23 -8.45 6.15 99.48 0.61 -7.83 16 12 C 0.48 21.23 7.24 71.24 0.52 21.75 16 13 O -0.54 -28.00 15.22 21.97 0.33 -27.66 16 14 O -0.35 -12.45 10.13 -51.39 -0.52 -12.97 16 15 C 0.10 2.78 5.59 71.24 0.40 3.18 16 16 C -0.11 -2.51 5.52 -19.86 -0.11 -2.62 16 17 C -0.07 -1.36 9.70 22.26 0.22 -1.15 16 18 C -0.15 -2.70 10.03 22.31 0.22 -2.47 16 19 C 0.09 1.74 7.30 22.38 0.16 1.91 16 20 F -0.14 -2.83 17.27 44.97 0.78 -2.05 16 21 C -0.15 -2.67 10.03 22.31 0.22 -2.45 16 22 C -0.07 -1.35 9.70 22.26 0.22 -1.13 16 23 H 0.06 2.49 5.48 -2.39 -0.01 2.48 16 24 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 25 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 26 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 27 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 28 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -70.06 285.79 6.81 -63.25 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 3.11 Total: -22.06 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.29 Total: -57.06 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.19 Total: -40.64 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.81 Total: 48.33 kcal Total: -70.06 6.81 -63.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049818104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.875 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds