Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46699 * 2 1 4 4 S 1.81400 * 109.47059 * 179.97438 * 3 2 1 5 5 O 1.42102 * 109.46880 * 296.38696 * 4 3 2 6 6 C 1.81398 * 103.00029 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47116 * 64.99498 * 6 4 3 8 8 C 1.50706 * 109.47099 * 305.00273 * 6 4 3 9 9 H 1.07999 * 120.00184 * 125.66626 * 8 6 4 10 10 C 1.37880 * 119.99790 * 305.67022 * 8 6 4 11 11 N 1.31514 * 120.00055 * 6.14119 * 10 8 6 12 12 Si 1.86798 * 120.00136 * 186.14282 * 10 8 6 13 13 H 1.48500 * 109.47204 * 89.99592 * 12 10 8 14 14 H 1.48497 * 109.47264 * 210.00048 * 12 10 8 15 15 H 1.48505 * 109.47121 * 329.99969 * 12 10 8 16 16 C 1.50700 * 109.47339 * 185.00246 * 6 4 3 17 17 C 1.38229 * 119.99867 * 215.91703 * 16 6 4 18 18 C 1.38235 * 119.99698 * 180.02562 * 17 16 6 19 19 C 1.38237 * 120.00337 * 0.06579 * 18 17 16 20 20 C 1.38238 * 119.99453 * 0.02562 * 19 18 17 21 21 C 1.38230 * 120.00431 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46625 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47451 * 299.99545 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00663 * 1 2 3 25 25 H 1.08994 * 109.47521 * 239.99903 * 2 1 3 26 26 H 1.09000 * 109.47118 * 119.99337 * 2 1 3 27 27 H 1.09001 * 109.47018 * 59.99437 * 3 2 1 28 28 H 1.09000 * 109.46750 * 300.00090 * 3 2 1 29 29 H 0.97002 * 120.00186 * 180.02562 * 11 10 8 30 30 H 1.08002 * 120.00123 * 0.10670 * 17 16 6 31 31 H 1.08001 * 119.99968 * 180.34353 * 18 17 16 32 32 H 1.07995 * 119.99820 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.99421 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.00154 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4427 0.0008 5 8 4.3271 0.8475 1.2012 6 6 4.2619 3.2102 -0.0001 7 1 3.9200 3.6625 0.9308 8 6 3.5812 3.8823 -1.1647 9 1 2.9478 4.7410 -0.9977 10 6 3.7671 3.4009 -2.4432 11 7 4.4382 2.2863 -2.6351 12 14 3.0656 4.3317 -3.9030 13 1 4.0678 5.3117 -4.3931 14 1 2.7372 3.3740 -4.9893 15 1 1.8339 5.0495 -3.4868 16 6 5.7541 3.3814 -0.1235 17 6 6.3896 4.4096 0.5471 18 6 7.7582 4.5668 0.4335 19 6 8.4912 3.6967 -0.3518 20 6 7.8553 2.6697 -1.0239 21 6 6.4867 2.5124 -0.9103 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6765 1.9564 -0.8900 29 1 4.5693 1.9478 -3.5347 30 1 5.8170 5.0892 1.1608 31 1 8.2556 5.3668 0.9618 32 1 9.5604 3.8199 -0.4408 33 1 8.4279 1.9901 -1.6377 34 1 5.9899 1.7102 -1.4357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084262081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -29.106834 kcal Electronic energy + Delta-G solvation = -16718.617797 eV Core-core repulsion = 14128.535256 eV Total energy + Delta-G solvation = -2590.082540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.24667 -34.45325 -34.04531 -33.71560 -30.98812 -29.87321 -27.58956 -26.41916 -23.48002 -21.60994 -21.18569 -20.24907 -16.98946 -16.24037 -15.62339 -15.18057 -14.64072 -14.42552 -14.23914 -13.84326 -13.32313 -12.85166 -12.51367 -12.37477 -12.21685 -12.09180 -11.72046 -11.42152 -11.14143 -11.03929 -10.84696 -10.72120 -10.48163 -10.26944 -10.12980 -9.91023 -9.66210 -9.05059 -8.53615 -7.94423 -7.62971 -6.79327 -6.25833 -4.39205 2.31526 2.41088 2.93204 3.17425 3.24258 3.26035 4.07522 4.16409 4.84473 4.94379 5.22259 5.46001 5.55361 5.71204 5.76108 5.79052 5.89416 6.07872 6.19229 6.24642 6.31871 6.42831 6.50671 6.51450 6.65740 6.67850 6.92260 6.94235 7.11243 7.35811 7.44644 7.62442 7.74325 7.84199 8.04543 8.49819 9.17260 10.62733 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.010351 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.203585 B = 2704.342723 C = 3712.828114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.436 4.436 4 S 1.245 4.755 5 O -0.916 6.916 6 C -0.206 4.206 7 H 0.049 0.951 8 C -0.489 4.489 9 H 0.070 0.930 10 C 0.072 3.928 11 N -0.877 5.877 12 Si 0.904 3.096 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.273 1.273 16 C -0.015 4.015 17 C -0.129 4.129 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.133 4.133 21 C -0.100 4.100 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.278 0.722 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -1.250 -1.617 2.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.572 4.572 4 S 1.451 4.549 5 O -0.911 6.911 6 C -0.325 4.325 7 H 0.068 0.932 8 C -0.529 4.529 9 H 0.088 0.912 10 C -0.133 4.133 11 N -0.515 5.515 12 Si 0.731 3.269 13 H -0.203 1.203 14 H -0.204 1.204 15 H -0.197 1.197 16 C -0.017 4.017 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.168 4.168 20 C -0.151 4.151 21 C -0.119 4.119 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.102 -2.231 -1.696 2.805 hybrid contribution -1.071 2.017 0.931 2.466 sum -0.969 -0.215 -0.765 1.253 Atomic orbital electron populations 1.21770 0.96284 1.00659 1.01595 1.21063 0.95565 0.95383 1.01934 1.27516 1.23170 1.00131 1.06355 1.72217 0.84175 0.91194 1.07323 1.92746 1.73922 1.69644 1.54817 1.23920 0.94150 1.13570 1.00870 0.93215 1.20575 1.27915 1.14954 0.89455 0.91224 1.24958 0.94394 0.94942 0.99030 1.69429 1.39205 1.19526 1.23368 0.86358 0.79392 0.79814 0.81379 1.20328 1.20434 1.19739 1.19693 0.94174 0.93786 0.94088 1.20927 0.94137 0.98668 1.01038 1.20837 0.94230 0.99718 1.00677 1.20864 0.98613 0.97203 1.00117 1.21096 0.95277 0.98384 1.00327 1.21922 0.92839 1.00982 0.96173 0.93307 0.93404 0.92572 0.91129 0.92614 0.91953 0.86293 0.91065 0.87641 0.87666 0.87729 0.87224 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.10 -1.76 5.94 -26.73 -0.16 -1.92 16 3 C -0.44 -8.74 5.53 37.16 0.21 -8.54 16 4 S 1.25 28.57 9.20 -107.50 -0.99 27.58 16 5 O -0.92 -25.01 18.14 -35.23 -0.64 -25.64 16 6 C -0.21 -4.94 2.82 -29.03 -0.08 -5.02 16 7 H 0.05 1.20 8.05 -51.93 -0.42 0.78 16 8 C -0.49 -11.65 7.77 -34.44 -0.27 -11.92 16 9 H 0.07 1.67 7.82 -52.49 -0.41 1.26 16 10 C 0.07 1.63 5.12 -17.82 -0.09 1.54 16 11 N -0.88 -19.43 8.17 55.43 0.45 -18.98 16 12 Si 0.90 18.40 29.54 -169.99 -5.02 13.38 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 C -0.02 -0.36 4.76 -104.63 -0.50 -0.86 16 17 C -0.13 -2.81 9.68 -39.59 -0.38 -3.19 16 18 C -0.14 -2.64 10.05 -39.58 -0.40 -3.04 16 19 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 20 C -0.13 -2.65 10.05 -39.58 -0.40 -3.04 16 21 C -0.10 -2.27 7.81 -39.58 -0.31 -2.57 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.12 2.34 7.65 -51.92 -0.40 1.94 16 29 H 0.28 5.76 8.31 -40.82 -0.34 5.42 16 30 H 0.11 2.15 8.06 -52.49 -0.42 1.73 16 31 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 34 H 0.16 3.63 4.91 -52.49 -0.26 3.37 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -28.12 293.67 -9.03 -37.14 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.85 Total: 5.58 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: -2.41 Total: -43.49 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.45 Total: -18.98 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.64 Total: -25.64 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.38 kcal Atomic # 16 Polarization: 28.57 SS G_CDS: -0.99 Total: 27.58 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -9.03 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084262081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.037 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds