Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46699 * 2 1 4 4 S 1.81400 * 109.47059 * 179.97438 * 3 2 1 5 5 O 1.42102 * 109.46880 * 296.38696 * 4 3 2 6 6 C 1.81398 * 103.00029 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.47116 * 64.99498 * 6 4 3 8 8 C 1.50706 * 109.47099 * 305.00273 * 6 4 3 9 9 H 1.07999 * 120.00184 * 125.66626 * 8 6 4 10 10 C 1.37880 * 119.99790 * 305.67022 * 8 6 4 11 11 N 1.31514 * 120.00055 * 6.14119 * 10 8 6 12 12 Si 1.86798 * 120.00136 * 186.14282 * 10 8 6 13 13 H 1.48500 * 109.47204 * 89.99592 * 12 10 8 14 14 H 1.48497 * 109.47264 * 210.00048 * 12 10 8 15 15 H 1.48505 * 109.47121 * 329.99969 * 12 10 8 16 16 C 1.50700 * 109.47339 * 185.00246 * 6 4 3 17 17 C 1.38229 * 119.99867 * 215.91703 * 16 6 4 18 18 C 1.38235 * 119.99698 * 180.02562 * 17 16 6 19 19 C 1.38237 * 120.00337 * 0.06579 * 18 17 16 20 20 C 1.38238 * 119.99453 * 0.02562 * 19 18 17 21 21 C 1.38230 * 120.00431 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46625 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47451 * 299.99545 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00663 * 1 2 3 25 25 H 1.08994 * 109.47521 * 239.99903 * 2 1 3 26 26 H 1.09000 * 109.47118 * 119.99337 * 2 1 3 27 27 H 1.09001 * 109.47018 * 59.99437 * 3 2 1 28 28 H 1.09000 * 109.46750 * 300.00090 * 3 2 1 29 29 H 0.97002 * 120.00186 * 180.02562 * 11 10 8 30 30 H 1.08002 * 120.00123 * 0.10670 * 17 16 6 31 31 H 1.08001 * 119.99968 * 180.34353 * 18 17 16 32 32 H 1.07995 * 119.99820 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.99421 * 179.97438 * 20 19 18 34 34 H 1.07993 * 120.00154 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4427 0.0008 5 8 4.3271 0.8475 1.2012 6 6 4.2619 3.2102 -0.0001 7 1 3.9200 3.6625 0.9308 8 6 3.5812 3.8823 -1.1647 9 1 2.9478 4.7410 -0.9977 10 6 3.7671 3.4009 -2.4432 11 7 4.4382 2.2863 -2.6351 12 14 3.0656 4.3317 -3.9030 13 1 4.0678 5.3117 -4.3931 14 1 2.7372 3.3740 -4.9893 15 1 1.8339 5.0495 -3.4868 16 6 5.7541 3.3814 -0.1235 17 6 6.3896 4.4096 0.5471 18 6 7.7582 4.5668 0.4335 19 6 8.4912 3.6967 -0.3518 20 6 7.8553 2.6697 -1.0239 21 6 6.4867 2.5124 -0.9103 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 1.6765 1.9564 0.8899 28 1 1.6765 1.9564 -0.8900 29 1 4.5693 1.9478 -3.5347 30 1 5.8170 5.0892 1.1608 31 1 8.2556 5.3668 0.9618 32 1 9.5604 3.8199 -0.4408 33 1 8.4279 1.9901 -1.6377 34 1 5.9899 1.7102 -1.4357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084262081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = -44.371301 kcal Electronic energy + Delta-G solvation = -16719.279714 eV Core-core repulsion = 14128.535256 eV Total energy + Delta-G solvation = -2590.744457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85117 -36.40262 -35.63863 -35.32716 -32.69267 -31.46389 -29.28379 -27.87381 -25.24419 -23.20631 -22.65115 -21.84366 -18.80940 -17.95652 -17.32218 -16.90151 -16.18436 -16.05285 -15.87492 -15.48271 -14.99512 -14.47676 -14.05173 -13.91588 -13.81768 -13.75814 -13.30988 -12.95226 -12.79589 -12.70618 -12.52691 -12.18108 -12.03248 -11.88220 -11.63558 -11.57550 -11.37634 -10.83633 -10.33593 -9.55362 -9.28763 -8.63013 -8.02117 -6.21207 0.68685 0.80865 1.16586 1.54643 1.58935 1.64979 2.29654 2.46979 3.15308 3.21345 3.41469 4.04285 4.14605 4.18271 4.28964 4.39260 4.46212 4.54032 4.62872 4.68625 4.92740 4.93294 5.00128 5.06000 5.20336 5.27811 5.32590 5.41582 5.51190 5.72548 5.77363 5.89417 6.00849 6.14038 6.43087 6.68748 7.36778 8.89407 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.010351 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.203585 B = 2704.342723 C = 3712.828114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.424 4.424 4 S 1.249 4.751 5 O -0.967 6.967 6 C -0.204 4.204 7 H 0.027 0.973 8 C -0.514 4.514 9 H 0.059 0.941 10 C 0.051 3.949 11 N -0.876 5.876 12 Si 0.954 3.046 13 H -0.287 1.287 14 H -0.264 1.264 15 H -0.275 1.275 16 C -0.050 4.050 17 C -0.155 4.155 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.125 4.125 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.287 0.713 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -1.305 -3.085 3.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.563 4.563 4 S 1.458 4.542 5 O -0.963 6.963 6 C -0.324 4.324 7 H 0.045 0.955 8 C -0.554 4.554 9 H 0.077 0.923 10 C -0.155 4.155 11 N -0.514 5.514 12 Si 0.779 3.221 13 H -0.213 1.213 14 H -0.188 1.188 15 H -0.200 1.200 16 C -0.052 4.052 17 C -0.174 4.174 18 C -0.152 4.152 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.144 4.144 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.630 -2.307 -3.157 3.961 hybrid contribution -1.201 2.067 1.376 2.759 sum -0.571 -0.240 -1.781 1.885 Atomic orbital electron populations 1.21747 0.93581 1.02535 1.02039 1.21174 0.97951 0.93126 1.02133 1.27395 1.20248 1.02386 1.06242 1.71459 0.85951 0.90728 1.06109 1.92665 1.76203 1.71059 1.56324 1.23896 0.95256 1.13263 0.99956 0.95474 1.20550 1.29220 1.15459 0.90200 0.92291 1.25396 0.94445 0.95488 1.00125 1.69461 1.38195 1.19372 1.24345 0.85607 0.78347 0.78844 0.79300 1.21304 1.18821 1.20039 1.19881 0.94094 0.95363 0.95870 1.21153 0.95791 0.98770 1.01673 1.21250 0.93159 1.00491 1.00316 1.21350 1.00640 0.95831 0.98433 1.21496 0.94424 0.99197 1.00416 1.22009 0.94341 1.01091 0.96912 0.90757 0.93565 0.91573 0.89510 0.93955 0.92837 0.85583 0.90155 0.87683 0.84265 0.83600 0.84272 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.11 -3.58 5.94 30.60 0.18 -3.40 16 3 C -0.42 -17.19 5.53 71.98 0.40 -16.79 16 4 S 1.25 59.08 9.20 -56.49 -0.52 58.56 16 5 O -0.97 -54.91 18.14 -148.98 -2.70 -57.61 16 6 C -0.20 -10.19 2.82 29.10 0.08 -10.11 16 7 H 0.03 1.39 8.05 -2.39 -0.02 1.37 16 8 C -0.51 -25.08 7.77 25.60 0.20 -24.88 16 9 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 10 C 0.05 2.29 5.12 84.66 0.43 2.72 16 11 N -0.88 -38.38 8.17 21.45 0.18 -38.21 16 12 Si 0.95 36.90 29.54 68.60 2.03 38.93 16 13 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 15 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 16 C -0.05 -2.42 4.76 -19.87 -0.09 -2.52 16 17 C -0.15 -6.83 9.68 22.27 0.22 -6.61 16 18 C -0.13 -4.93 10.05 22.27 0.22 -4.70 16 19 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 20 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 21 C -0.12 -5.64 7.81 22.27 0.17 -5.47 16 22 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.13 4.93 7.65 -2.39 -0.02 4.91 16 29 H 0.29 11.51 8.31 -92.71 -0.77 10.74 16 30 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 34 H 0.16 7.08 4.91 -2.91 -0.01 7.07 16 Total: -1.00 -61.23 293.67 3.02 -58.21 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 1.07 Total: 24.69 kcal Atomic # 6 Polarization: -87.55 SS G_CDS: 2.97 Total: -84.57 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.18 Total: -38.21 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -2.70 Total: -57.61 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 16 Polarization: 59.08 SS G_CDS: -0.52 Total: 58.56 kcal Total: -61.23 3.02 -58.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084262081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds