Wall clock time and date at job start Mon Mar 30 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50710 * 109.50606 * 2 1 4 4 C 1.38215 * 120.01332 * 296.13961 * 3 2 1 5 5 C 1.38223 * 120.02526 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05174 * 0.02562 * 5 4 3 7 7 C 1.38183 * 120.02420 * 0.02562 * 6 5 4 8 8 C 1.38442 * 120.00761 * 115.86074 * 3 2 1 9 9 F 1.35095 * 120.02750 * 0.02562 * 8 3 2 10 10 O 1.43756 * 109.63268 * 239.68737 * 2 1 3 11 11 C 1.44785 * 104.81261 * 264.43296 * 10 2 1 12 12 C 1.54912 * 101.75488 * 323.87303 * 11 10 2 13 13 H 1.08993 * 110.70067 * 277.18279 * 12 11 10 14 14 C 1.50703 * 110.69364 * 153.97350 * 12 11 10 15 15 H 1.07999 * 120.00157 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00053 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00012 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 120.00063 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47090 * 90.00170 * 18 16 14 20 20 H 1.48496 * 109.47053 * 210.00109 * 18 16 14 21 21 H 1.48497 * 109.47192 * 330.00499 * 18 16 14 22 22 O 1.43361 * 109.63491 * 120.31829 * 2 1 3 23 23 H 1.09001 * 109.46778 * 179.61283 * 1 2 3 24 24 H 1.09000 * 109.46653 * 299.61324 * 1 2 3 25 25 H 1.08994 * 109.47151 * 59.61149 * 1 2 3 26 26 H 1.07997 * 119.99131 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.97637 * 180.02562 * 5 4 3 28 28 H 1.08000 * 119.99134 * 179.97438 * 6 5 4 29 29 H 1.07998 * 120.00901 * 179.97438 * 7 6 5 30 30 H 1.09002 * 110.97919 * 82.00435 * 11 10 2 31 31 H 1.08997 * 110.97766 * 205.74931 * 11 10 2 32 32 H 0.97004 * 120.00231 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0332 1.4206 0.0000 4 6 1.7671 2.2483 -1.0744 5 6 2.2280 3.5514 -1.0744 6 6 2.9563 4.0283 -0.0002 7 6 3.2245 3.2023 1.0746 8 6 2.7573 1.8986 1.0788 9 9 3.0137 1.0920 2.1317 10 8 2.0130 -0.6834 -1.1689 11 6 2.2653 -2.0390 -0.7273 12 6 2.7892 -1.8096 0.7124 13 1 3.8515 -1.5660 0.7015 14 6 2.5272 -3.0185 1.5733 15 1 2.0342 -3.8832 1.1543 16 6 2.9180 -3.0209 2.8956 17 7 3.5188 -1.9681 3.4056 18 14 2.5939 -4.5196 3.9625 19 1 3.7504 -5.4473 3.8772 20 1 2.4051 -4.0922 5.3721 21 1 1.3689 -5.2107 3.4864 22 8 2.0117 -0.6816 1.1656 23 1 -0.3633 -1.0277 -0.0069 24 1 -0.3632 0.5078 0.8935 25 1 -0.3633 0.5198 -0.8864 26 1 1.1987 1.8769 -1.9143 27 1 2.0192 4.1977 -1.9142 28 1 3.3163 5.0465 -0.0014 29 1 3.7937 3.5749 1.9134 30 1 1.3458 -2.6243 -0.7194 31 1 3.0241 -2.5165 -1.3472 32 1 3.7940 -1.9699 4.3358 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258567295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:48 Heat of formation + Delta-G solvation = -123.880004 kcal Electronic energy + Delta-G solvation = -19222.690212 eV Core-core repulsion = 16062.284823 eV Total energy + Delta-G solvation = -3160.405389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.47974 -41.31736 -39.47524 -35.79627 -34.82693 -33.54129 -31.38974 -30.54441 -29.64370 -26.75288 -24.61595 -23.68033 -22.80801 -21.69495 -18.84812 -18.60178 -17.96936 -17.36315 -16.71212 -16.62237 -16.31704 -16.07717 -15.57244 -15.18367 -14.90587 -14.52838 -14.14419 -13.86495 -13.73522 -13.41443 -13.22889 -13.05841 -12.91670 -12.80657 -12.57996 -12.37072 -12.28175 -11.93561 -11.29556 -10.85630 -10.70366 -10.16455 -9.88886 -9.52335 -8.17918 -6.43165 0.22573 0.31059 1.39883 1.41844 1.52630 2.37322 2.58808 2.84039 3.02310 3.42019 3.57038 3.82064 3.92544 4.14549 4.22268 4.27941 4.34983 4.46498 4.47222 4.57114 4.63921 4.78341 4.95324 5.02445 5.12397 5.22198 5.31472 5.38215 5.45740 5.50007 5.64709 6.03483 6.05110 6.53634 6.82776 7.33372 8.88693 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.007756 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.566585 B = 3609.463019 C = 4184.607687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.269 3.731 3 C -0.158 4.158 4 C -0.073 4.073 5 C -0.130 4.130 6 C -0.079 4.079 7 C -0.175 4.175 8 C 0.086 3.914 9 F -0.134 7.134 10 O -0.388 6.388 11 C 0.031 3.969 12 C 0.182 3.818 13 H -0.001 1.001 14 C -0.560 4.560 15 H 0.074 0.926 16 C 0.025 3.975 17 N -0.890 5.890 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.262 1.262 22 O -0.373 6.373 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 10.327 -8.678 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.191 3.809 3 C -0.160 4.160 4 C -0.091 4.091 5 C -0.148 4.148 6 C -0.096 4.096 7 C -0.194 4.194 8 C 0.067 3.933 9 F -0.113 7.113 10 O -0.310 6.310 11 C -0.045 4.045 12 C 0.126 3.874 13 H 0.017 0.983 14 C -0.597 4.597 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.526 5.526 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.211 1.211 21 H -0.186 1.186 22 O -0.295 6.295 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.164 0.836 27 H 0.188 0.812 28 H 0.189 0.811 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.587 10.525 -8.481 13.984 hybrid contribution 0.212 -1.213 1.222 1.735 sum -3.375 9.312 -7.258 12.280 Atomic orbital electron populations 1.22228 0.92397 1.02948 1.03150 1.22099 0.93675 0.87871 0.77230 1.20385 1.02726 0.96390 0.96456 1.21101 0.98356 0.93724 0.95959 1.21591 0.98278 0.94966 0.99974 1.21471 0.96082 1.00593 0.91465 1.21460 1.03702 0.91661 1.02577 1.18297 0.98991 0.90214 0.85840 1.91682 1.91827 1.73047 1.54718 1.89032 1.86430 1.23077 1.32420 1.24450 1.01129 0.83311 0.95624 1.21112 0.90384 0.85015 0.90840 0.98338 1.21315 1.42040 0.99444 0.96882 0.90756 1.26015 0.93372 0.98992 0.99505 1.70235 1.37891 1.30259 1.14223 0.85427 0.79157 0.78840 0.77376 1.19278 1.21108 1.18610 1.89300 1.69733 1.43270 1.27173 0.92155 0.91908 0.88735 0.83643 0.81195 0.81063 0.83940 0.90735 0.87204 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.05 71.98 0.65 -4.85 16 2 C 0.27 11.87 1.23 29.85 0.04 11.91 16 3 C -0.16 -6.27 5.01 -19.82 -0.10 -6.37 16 4 C -0.07 -2.14 9.09 22.26 0.20 -1.94 16 5 C -0.13 -2.86 10.04 22.27 0.22 -2.64 16 6 C -0.08 -1.77 10.04 22.26 0.22 -1.55 16 7 C -0.18 -5.51 10.03 22.31 0.22 -5.29 16 8 C 0.09 3.63 7.20 22.38 0.16 3.79 16 9 F -0.13 -7.15 14.57 44.97 0.66 -6.50 16 10 O -0.39 -16.71 10.83 -126.22 -1.37 -18.08 16 11 C 0.03 1.36 7.33 72.64 0.53 1.89 16 12 C 0.18 10.02 3.44 30.50 0.10 10.12 16 13 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C -0.56 -31.98 8.82 25.60 0.23 -31.75 16 15 H 0.07 3.98 7.76 -2.91 -0.02 3.96 16 16 C 0.02 1.43 5.45 84.66 0.46 1.89 16 17 N -0.89 -55.07 13.15 21.45 0.28 -54.78 16 18 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 O -0.37 -20.60 7.62 -126.22 -0.96 -21.57 16 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.09 2.76 7.61 -2.39 -0.02 2.74 16 26 H 0.15 3.65 7.81 -2.91 -0.02 3.63 16 27 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 28 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 30 H 0.07 3.09 8.02 -2.39 -0.02 3.07 16 31 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 32 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -72.92 280.00 4.70 -68.22 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.12 Total: 11.09 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 2.95 Total: -24.77 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.28 Total: -54.78 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -2.33 Total: -39.64 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.66 Total: -6.50 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.92 4.70 -68.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258567295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.663 kcal (2) G-P(sol) polarization free energy of solvation -72.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds