Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48491 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46776 * 299.99633 * 3 2 1 6 6 H 1.48497 * 109.47395 * 59.99227 * 3 2 1 7 7 C 1.39719 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 186.19802 * 7 2 1 9 9 C 1.41161 * 119.99963 * 6.20715 * 7 2 1 10 10 C 1.37691 * 122.86215 * 174.08754 * 9 7 2 11 11 S 1.70992 * 108.83970 * 179.97438 * 10 9 7 12 12 C 1.75888 * 90.80806 * 359.97438 * 11 10 9 13 13 C 1.50701 * 124.99271 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.72866 * 195.59963 * 13 12 11 15 15 C 1.53981 * 109.69508 * 75.02601 * 13 12 11 16 16 C 1.45881 * 112.65891 * 158.89922 * 15 13 12 17 17 C 1.54515 * 111.67154 * 61.50814 * 16 15 13 18 18 C 1.50545 * 108.85968 * 282.74345 * 17 16 15 19 19 C 1.53917 * 112.93377 * 91.75639 * 18 17 16 20 20 N 1.44308 * 109.69245 * 316.16496 * 13 12 11 21 21 N 1.28795 * 110.01959 * 0.26955 * 12 11 10 22 22 H 0.97001 * 119.99785 * 0.02562 * 1 2 3 23 23 H 1.08001 * 125.58489 * 359.95692 * 10 9 7 24 24 H 1.08990 * 108.84607 * 279.72404 * 15 13 12 25 25 H 1.09004 * 108.84276 * 38.08810 * 15 13 12 26 26 H 1.09007 * 109.03444 * 182.06324 * 16 15 13 27 27 H 1.08991 * 109.04575 * 300.93863 * 16 15 13 28 28 H 1.08994 * 109.57891 * 42.55787 * 17 16 15 29 29 H 1.09001 * 109.57580 * 162.93853 * 17 16 15 30 30 H 1.08999 * 108.79037 * 212.64923 * 18 17 16 31 31 H 1.09005 * 108.78497 * 330.86698 * 18 17 16 32 32 H 1.09000 * 108.71356 * 78.75577 * 19 18 17 33 33 H 1.09008 * 108.71090 * 196.76368 * 19 18 17 34 34 H 1.00900 * 111.00015 * 341.05433 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3463 0.0006 5 1 1.8856 2.3963 -1.2126 6 1 1.8855 2.3965 1.2124 7 6 2.0088 -1.2100 0.0005 8 1 3.0841 -1.2127 0.1015 9 6 1.3092 -2.4290 -0.1311 10 6 1.9434 -3.6446 -0.2568 11 16 0.7613 -4.8729 -0.3907 12 6 -0.5266 -3.6812 -0.2692 13 6 -2.0002 -3.9944 -0.3069 14 1 -2.5660 -3.0808 -0.4900 15 6 -2.4337 -4.6132 1.0347 16 6 -3.8682 -4.4934 1.2715 17 6 -4.6885 -5.2340 0.1917 18 6 -4.7112 -4.3985 -1.0604 19 6 -3.5668 -4.7413 -2.0310 20 7 -2.2676 -4.9500 -1.3547 21 7 -0.0253 -2.5009 -0.1485 22 1 -0.4850 0.8401 -0.0004 23 1 3.0125 -3.7975 -0.2690 24 1 -2.1630 -5.6690 1.0393 25 1 -1.9005 -4.1116 1.8424 26 1 -4.1037 -4.9154 2.2486 27 1 -4.1428 -3.4387 1.2656 28 1 -4.2264 -6.1980 -0.0209 29 1 -5.7075 -5.3861 0.5476 30 1 -5.6622 -4.5548 -1.5696 31 1 -4.6329 -3.3474 -0.7825 32 1 -3.8286 -5.6498 -2.5734 33 1 -3.4610 -3.9273 -2.7482 34 1 -1.5120 -4.9748 -2.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259508516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = 26.415365 kcal Electronic energy + Delta-G solvation = -16600.058396 eV Core-core repulsion = 14044.676230 eV Total energy + Delta-G solvation = -2555.382166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87168 -37.44594 -33.56343 -33.05686 -32.23358 -29.04473 -25.78898 -25.34900 -25.19633 -21.94791 -20.13910 -19.63207 -18.93903 -17.44897 -16.19914 -15.18855 -15.14224 -14.77947 -14.29573 -13.83994 -13.66043 -13.43638 -12.76162 -12.58919 -12.37972 -11.76790 -11.60780 -11.53629 -11.23361 -10.92534 -10.71969 -10.56778 -10.47930 -10.38431 -10.22117 -10.13389 -9.63537 -9.26945 -8.02794 -8.01429 -7.94511 -7.33352 -6.54609 -4.35310 2.27573 2.93994 3.03340 3.09516 3.14849 3.69963 4.00756 4.25239 4.44433 4.90029 5.05419 5.18088 5.25483 5.40975 5.51149 5.53183 5.76272 5.83681 6.00909 6.05843 6.12947 6.16910 6.41820 6.45585 6.51794 6.57813 6.75996 6.80082 7.09650 7.22761 7.47537 7.54143 7.69972 8.20390 8.54745 8.88743 9.59770 10.33314 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.006688 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.674116 B = 4185.407369 C = 4748.404489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.433 4.433 8 H 0.084 0.916 9 C 0.223 3.777 10 C -0.458 4.458 11 S -0.016 6.016 12 C 0.043 3.957 13 C 0.187 3.813 14 H 0.069 0.931 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.122 4.122 19 C 0.067 3.933 20 N -0.691 5.691 21 N -0.394 5.394 22 H 0.272 0.728 23 H 0.137 0.863 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 -6.071 -1.096 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.150 4.150 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.597 4.597 11 S 0.231 5.769 12 C -0.241 4.241 13 C 0.073 3.927 14 H 0.087 0.913 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.160 4.160 19 C -0.062 4.062 20 N -0.325 5.325 21 N -0.108 5.108 22 H 0.083 0.917 23 H 0.154 0.846 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.163 -6.901 -0.739 11.495 hybrid contribution 1.321 2.451 -0.451 2.821 sum -7.842 -4.450 -1.190 9.095 Atomic orbital electron populations 1.70126 1.06988 1.27814 1.32666 1.25988 0.94949 1.01048 0.93033 0.86231 0.80776 0.81107 0.78432 1.18480 1.19924 1.19935 1.18983 0.94497 0.88489 1.44806 0.89801 1.18028 0.85289 0.93184 0.93375 1.25212 1.01266 0.94869 1.38332 1.82684 1.01210 1.16320 1.76645 1.27905 0.98309 0.91136 1.06791 1.19396 0.87582 0.93569 0.92172 0.91298 1.20458 0.95760 1.01839 0.96116 1.20560 0.95788 1.00332 0.98342 1.21298 0.99014 0.99866 0.94614 1.21407 0.97419 1.00547 0.96607 1.22166 0.89195 0.99771 0.95053 1.59419 1.04362 1.52479 1.16290 1.67380 1.12440 1.19489 1.11537 0.91718 0.84562 0.91119 0.92030 0.92407 0.92489 0.90822 0.92757 0.91943 0.92152 0.91270 0.95454 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.49 11.72 55.54 0.65 -19.84 16 2 C 0.07 1.89 5.49 -17.34 -0.10 1.80 16 3 Si 0.91 19.33 29.56 -169.99 -5.03 14.31 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.43 -12.12 9.23 -37.92 -0.35 -12.47 16 8 H 0.08 2.24 7.85 -52.49 -0.41 1.83 16 9 C 0.22 6.31 6.46 -86.16 -0.56 5.76 16 10 C -0.46 -11.87 10.98 30.53 0.34 -11.53 16 11 S -0.02 -0.36 22.57 -107.50 -2.43 -2.78 16 12 C 0.04 0.98 6.03 -13.55 -0.08 0.90 16 13 C 0.19 3.49 2.66 -69.74 -0.19 3.30 16 14 H 0.07 1.39 6.79 -51.93 -0.35 1.04 16 15 C -0.10 -1.70 4.80 -29.59 -0.14 -1.85 16 16 C -0.11 -1.54 5.34 -29.31 -0.16 -1.70 16 17 C -0.11 -1.32 5.63 -27.16 -0.15 -1.48 16 18 C -0.12 -1.48 5.28 -27.48 -0.14 -1.63 16 19 C 0.07 0.89 6.44 -2.77 -0.02 0.87 16 20 N -0.69 -11.06 5.98 -107.86 -0.65 -11.71 16 21 N -0.39 -10.73 8.49 -8.36 -0.07 -10.80 16 22 H 0.27 6.73 8.30 -40.82 -0.34 6.40 16 23 H 0.14 3.39 8.06 -52.49 -0.42 2.97 16 24 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 25 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 28 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.80 6.66 -51.93 -0.35 0.46 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.35 5.87 7.83 -39.29 -0.31 5.56 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -29.13 285.57 -9.48 -38.61 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.72 Total: 5.94 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.55 Total: -18.03 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.07 Total: -42.35 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.43 Total: -2.78 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.13 -9.48 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.023 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds