Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86799 * 120.00288 * 2 1 4 4 H 1.48491 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46776 * 299.99633 * 3 2 1 6 6 H 1.48497 * 109.47395 * 59.99227 * 3 2 1 7 7 C 1.39719 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 186.19802 * 7 2 1 9 9 C 1.41161 * 119.99963 * 6.20715 * 7 2 1 10 10 C 1.37691 * 122.86215 * 174.08754 * 9 7 2 11 11 S 1.70992 * 108.83970 * 179.97438 * 10 9 7 12 12 C 1.75888 * 90.80806 * 359.97438 * 11 10 9 13 13 C 1.50701 * 124.99271 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.72866 * 195.59963 * 13 12 11 15 15 C 1.53981 * 109.69508 * 75.02601 * 13 12 11 16 16 C 1.45881 * 112.65891 * 158.89922 * 15 13 12 17 17 C 1.54515 * 111.67154 * 61.50814 * 16 15 13 18 18 C 1.50545 * 108.85968 * 282.74345 * 17 16 15 19 19 C 1.53917 * 112.93377 * 91.75639 * 18 17 16 20 20 N 1.44308 * 109.69245 * 316.16496 * 13 12 11 21 21 N 1.28795 * 110.01959 * 0.26955 * 12 11 10 22 22 H 0.97001 * 119.99785 * 0.02562 * 1 2 3 23 23 H 1.08001 * 125.58489 * 359.95692 * 10 9 7 24 24 H 1.08990 * 108.84607 * 279.72404 * 15 13 12 25 25 H 1.09004 * 108.84276 * 38.08810 * 15 13 12 26 26 H 1.09007 * 109.03444 * 182.06324 * 16 15 13 27 27 H 1.08991 * 109.04575 * 300.93863 * 16 15 13 28 28 H 1.08994 * 109.57891 * 42.55787 * 17 16 15 29 29 H 1.09001 * 109.57580 * 162.93853 * 17 16 15 30 30 H 1.08999 * 108.79037 * 212.64923 * 18 17 16 31 31 H 1.09005 * 108.78497 * 330.86698 * 18 17 16 32 32 H 1.09000 * 108.71356 * 78.75577 * 19 18 17 33 33 H 1.09008 * 108.71090 * 196.76368 * 19 18 17 34 34 H 1.00900 * 111.00015 * 341.05433 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3463 0.0006 5 1 1.8856 2.3963 -1.2126 6 1 1.8855 2.3965 1.2124 7 6 2.0088 -1.2100 0.0005 8 1 3.0841 -1.2127 0.1015 9 6 1.3092 -2.4290 -0.1311 10 6 1.9434 -3.6446 -0.2568 11 16 0.7613 -4.8729 -0.3907 12 6 -0.5266 -3.6812 -0.2692 13 6 -2.0002 -3.9944 -0.3069 14 1 -2.5660 -3.0808 -0.4900 15 6 -2.4337 -4.6132 1.0347 16 6 -3.8682 -4.4934 1.2715 17 6 -4.6885 -5.2340 0.1917 18 6 -4.7112 -4.3985 -1.0604 19 6 -3.5668 -4.7413 -2.0310 20 7 -2.2676 -4.9500 -1.3547 21 7 -0.0253 -2.5009 -0.1485 22 1 -0.4850 0.8401 -0.0004 23 1 3.0125 -3.7975 -0.2690 24 1 -2.1630 -5.6690 1.0393 25 1 -1.9005 -4.1116 1.8424 26 1 -4.1037 -4.9154 2.2486 27 1 -4.1428 -3.4387 1.2656 28 1 -4.2264 -6.1980 -0.0209 29 1 -5.7075 -5.3861 0.5476 30 1 -5.6622 -4.5548 -1.5696 31 1 -4.6329 -3.3474 -0.7825 32 1 -3.8286 -5.6498 -2.5734 33 1 -3.4610 -3.9273 -2.7482 34 1 -1.5120 -4.9748 -2.0229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259508516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = 7.684761 kcal Electronic energy + Delta-G solvation = -16600.870616 eV Core-core repulsion = 14044.676230 eV Total energy + Delta-G solvation = -2556.194386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35368 -39.16982 -35.30388 -34.44798 -33.58236 -30.90728 -27.70294 -26.87939 -26.37623 -23.65180 -21.40964 -21.02492 -20.65216 -19.34973 -17.76262 -17.01777 -16.53362 -16.47560 -15.50149 -15.15978 -15.09593 -14.94916 -14.31620 -14.28293 -13.70309 -13.46932 -13.28172 -13.00867 -12.78923 -12.66637 -12.28126 -12.21957 -11.77534 -11.55637 -11.50349 -11.40868 -11.23804 -11.16418 -9.93769 -9.89488 -9.35222 -9.27773 -8.50287 -6.42363 0.35325 1.08206 1.34652 1.36027 1.50928 1.75141 2.20695 2.31504 3.07252 3.38445 3.57229 3.85068 4.05843 4.15242 4.25527 4.33541 4.59012 4.68645 4.79676 4.83386 4.86351 5.06989 5.10407 5.12173 5.25738 5.29931 5.35503 5.40826 5.43305 5.48391 5.59767 6.08171 6.20647 6.33197 6.51315 6.84559 7.64296 8.39589 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.006688 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.674116 B = 4185.407369 C = 4748.404489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.027 3.973 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.473 4.473 8 H 0.082 0.918 9 C 0.193 3.807 10 C -0.489 4.489 11 S 0.051 5.949 12 C 0.045 3.955 13 C 0.193 3.807 14 H 0.051 0.949 15 C -0.093 4.093 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.122 4.122 19 C 0.063 3.937 20 N -0.685 5.685 21 N -0.440 5.440 22 H 0.280 0.720 23 H 0.137 0.863 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -6.734 -1.351 11.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.192 4.192 3 Si 0.811 3.189 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.507 4.507 8 H 0.100 0.900 9 C 0.070 3.930 10 C -0.628 4.628 11 S 0.300 5.700 12 C -0.239 4.239 13 C 0.079 3.921 14 H 0.069 0.931 15 C -0.132 4.132 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.159 4.159 19 C -0.065 4.065 20 N -0.319 5.319 21 N -0.155 5.155 22 H 0.090 0.910 23 H 0.155 0.845 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.511 -7.606 -0.998 13.013 hybrid contribution 1.693 2.526 -0.395 3.066 sum -8.818 -5.080 -1.392 10.271 Atomic orbital electron populations 1.70215 1.08603 1.29256 1.32857 1.26927 0.95844 1.04517 0.91906 0.85034 0.79172 0.75769 0.78941 1.18066 1.18942 1.18807 1.19327 0.94761 0.89878 1.46772 0.89988 1.18461 0.86331 0.94196 0.93997 1.25508 1.02463 0.96172 1.38684 1.82221 0.98711 1.13646 1.75470 1.28735 1.00509 0.90787 1.03873 1.19450 0.84543 0.93729 0.94410 0.93131 1.20409 0.97646 1.01365 0.93785 1.20561 0.93884 1.00406 1.00246 1.21265 0.99985 0.99183 0.93652 1.21440 0.98138 0.99539 0.96830 1.22357 0.88082 1.00866 0.95243 1.59527 1.05511 1.50929 1.15934 1.67396 1.12221 1.21617 1.14279 0.90998 0.84485 0.90509 0.94586 0.90534 0.93396 0.90840 0.90234 0.89136 0.93868 0.88688 0.96092 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.88 11.72 21.79 0.26 -43.63 16 2 C 0.03 1.45 5.49 85.17 0.47 1.91 16 3 Si 0.99 40.13 29.56 68.60 2.03 42.15 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.47 -27.44 9.23 23.35 0.22 -27.23 16 8 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.19 11.29 6.46 39.45 0.25 11.55 16 10 C -0.49 -26.03 10.98 67.69 0.74 -25.29 16 11 S 0.05 2.24 22.57 -56.49 -1.28 0.96 16 12 C 0.04 2.09 6.03 88.55 0.53 2.63 16 13 C 0.19 7.20 2.66 44.99 0.12 7.32 16 14 H 0.05 2.09 6.79 -2.39 -0.02 2.07 16 15 C -0.09 -3.02 4.80 28.74 0.14 -2.88 16 16 C -0.11 -2.92 5.34 28.93 0.15 -2.76 16 17 C -0.10 -2.16 5.63 30.31 0.17 -1.99 16 18 C -0.12 -2.64 5.28 30.11 0.16 -2.49 16 19 C 0.06 1.53 6.44 86.41 0.56 2.09 16 20 N -0.69 -21.05 5.98 -495.16 -2.96 -24.01 16 21 N -0.44 -24.77 8.49 -180.35 -1.53 -26.30 16 22 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 23 H 0.14 7.03 8.06 -2.91 -0.02 7.01 16 24 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 25 H 0.04 1.34 7.94 -2.38 -0.02 1.32 16 26 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.05 1.32 7.59 -2.39 -0.02 1.30 16 28 H 0.07 1.58 7.78 -2.39 -0.02 1.56 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.09 6.66 -2.38 -0.02 1.08 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.34 11.18 7.83 -89.69 -0.70 10.48 16 Total: -1.00 -64.88 285.57 0.43 -64.46 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.40 Total: 23.50 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.51 Total: -37.14 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.24 Total: -93.94 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.28 Total: 0.96 kcal Total: -64.88 0.43 -64.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.142 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds