Wall clock time and date at job start Mon Mar 30 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00291 * 2 1 4 4 H 1.48501 * 109.46697 * 274.97714 * 3 2 1 5 5 H 1.48502 * 109.47202 * 34.97692 * 3 2 1 6 6 H 1.48494 * 109.47166 * 154.97742 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99888 * 188.31478 * 7 2 1 9 9 C 1.50697 * 120.00138 * 8.31846 * 7 2 1 10 10 H 1.09007 * 110.36664 * 302.97617 * 9 7 2 11 11 C 1.54380 * 110.41191 * 65.32209 * 9 7 2 12 12 C 1.54263 * 105.06042 * 142.75286 * 11 9 7 13 13 C 1.54379 * 105.14727 * 359.94712 * 12 11 9 14 14 N 1.48554 * 110.51235 * 180.55721 * 9 7 2 15 15 C 1.46894 * 111.00081 * 82.13133 * 14 9 7 16 16 C 1.53006 * 109.47143 * 190.00027 * 15 14 9 17 17 C 1.50706 * 109.47012 * 179.97438 * 16 15 14 18 18 C 1.33635 * 122.75004 * 124.73198 * 17 16 15 19 19 S 1.76192 * 107.92511 * 179.97438 * 18 17 16 20 20 C 1.70971 * 90.28326 * 0.27438 * 19 18 17 21 21 N 1.29028 * 110.16805 * 359.84327 * 20 19 18 22 22 H 0.97002 * 119.99138 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.32521 * 23.85629 * 11 9 7 24 24 H 1.08997 * 110.32554 * 261.64584 * 11 9 7 25 25 H 1.08998 * 110.32451 * 118.89545 * 12 11 9 26 26 H 1.09003 * 110.32273 * 241.00536 * 12 11 9 27 27 H 1.09003 * 110.40836 * 94.97835 * 13 12 11 28 28 H 1.09004 * 110.41445 * 217.41680 * 13 12 11 29 29 H 1.09006 * 109.47252 * 309.99895 * 15 14 9 30 30 H 1.08996 * 109.47466 * 69.99882 * 15 14 9 31 31 H 1.09000 * 109.46961 * 299.99630 * 16 15 14 32 32 H 1.08992 * 109.47035 * 60.00117 * 16 15 14 33 33 H 1.08001 * 126.04087 * 0.04006 * 18 17 16 34 34 H 1.08003 * 124.91792 * 179.83926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3915 2.1070 -1.3948 5 1 1.5033 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 0.0005 8 1 3.0759 -1.1990 0.1358 9 6 1.2628 -2.4924 -0.1877 10 1 0.4896 -2.6013 0.5729 11 6 0.6422 -2.5581 -1.5997 12 6 0.7887 -4.0311 -2.0338 13 6 1.4867 -4.7332 -0.8493 14 7 2.2035 -3.6411 -0.1384 15 6 2.4984 -4.0208 1.2497 16 6 3.6486 -5.0297 1.2691 17 6 3.9515 -5.4187 2.6932 18 6 3.9547 -6.6882 3.1107 19 16 4.3548 -6.6936 4.8266 20 6 4.4701 -4.9879 4.8138 21 7 4.2286 -4.5345 3.6302 22 1 -0.4849 0.8401 -0.0004 23 1 1.1862 -1.9061 -2.2831 24 1 -0.4103 -2.2768 -1.5641 25 1 -0.1919 -4.4728 -2.2113 26 1 1.4032 -4.1020 -2.9313 27 1 0.7490 -5.1939 -0.1922 28 1 2.1926 -5.4802 -1.2124 29 1 2.7831 -3.1342 1.8163 30 1 1.6131 -4.4705 1.6993 31 1 3.3638 -5.9163 0.7026 32 1 4.5338 -4.5800 0.8196 33 1 3.7495 -7.5574 2.5034 34 1 4.7101 -4.3780 5.6723 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:00 Heat of formation + Delta-G solvation = 44.785794 kcal Electronic energy + Delta-G solvation = -16252.066677 eV Core-core repulsion = 13697.481113 eV Total energy + Delta-G solvation = -2554.585564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80910 -37.82529 -33.36114 -32.36969 -30.48501 -28.29480 -27.56008 -24.86630 -24.25024 -22.34791 -19.83003 -19.54696 -19.31940 -17.78830 -16.29930 -15.79682 -15.04529 -14.62092 -14.42642 -14.01568 -13.61948 -13.37360 -13.19188 -12.61729 -12.21185 -11.93588 -11.63094 -11.42125 -11.04390 -10.82414 -10.57754 -10.51871 -10.17418 -10.08457 -9.68996 -9.53440 -9.49772 -9.43903 -8.89327 -8.73249 -8.37710 -7.33980 -5.97155 -3.95643 0.75464 1.41649 1.73546 2.90746 3.36709 3.43141 3.48465 4.30097 4.48604 4.95015 5.21011 5.26069 5.34990 5.42921 5.69818 5.71862 5.81183 5.87352 6.03847 6.11824 6.23305 6.35413 6.53519 6.60140 6.67093 6.81374 7.10497 7.16979 7.36523 7.60552 7.82743 7.89619 8.10972 8.25412 8.58001 9.10350 9.67251 11.13315 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.005674 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.086173 B = 4933.708422 C = 5899.580053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.064 0.936 9 C 0.202 3.798 10 H 0.012 0.988 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.031 3.969 14 N -0.509 5.509 15 C 0.064 3.936 16 C -0.040 4.040 17 C 0.082 3.918 18 C -0.260 4.260 19 S 0.086 5.914 20 C 0.027 3.973 21 N -0.456 5.456 22 H 0.259 0.741 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -13.665 6.261 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.096 3.904 10 H 0.030 0.970 11 C -0.140 4.140 12 C -0.166 4.166 13 C -0.098 4.098 14 N -0.233 5.233 15 C -0.065 4.065 16 C -0.081 4.081 17 C -0.050 4.050 18 C -0.398 4.398 19 S 0.337 5.663 20 C -0.272 4.272 21 N -0.169 5.169 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.193 0.807 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 6.722 -13.578 6.722 16.575 hybrid contribution -0.611 0.913 -0.319 1.144 sum 6.111 -12.664 6.403 15.451 Atomic orbital electron populations 1.69993 1.05949 1.26502 1.50937 1.24937 0.94785 0.99093 0.95329 0.86556 0.80029 0.83414 0.77893 1.20761 1.21485 1.19775 1.21012 0.94246 0.89582 1.48597 0.91810 1.20176 0.89398 0.88175 0.92621 0.96987 1.22269 1.00374 0.92286 0.99065 1.22363 0.98468 0.98390 0.97423 1.23077 0.95690 0.94929 0.96075 1.65386 1.41429 1.04572 1.11942 1.21971 0.94720 0.98264 0.91574 1.20244 1.00814 0.99783 0.87236 1.20578 0.99302 0.87612 0.97494 1.26821 1.13699 1.01945 0.97368 1.83874 1.65141 1.09353 1.07928 1.28474 1.03850 0.95712 0.99131 1.66160 1.13486 1.37525 0.99724 0.93124 0.92291 0.92612 0.93225 0.92518 0.95446 0.91989 0.89385 0.96281 0.90939 0.89360 0.80740 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 12.96 55.43 0.72 -25.48 16 2 C 0.06 1.70 5.28 -17.82 -0.09 1.60 16 3 Si 0.89 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.01 8.30 -34.44 -0.29 -14.30 16 8 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 9 C 0.20 5.22 2.08 -67.23 -0.14 5.08 16 10 H 0.01 0.35 8.00 -51.92 -0.42 -0.06 16 11 C -0.10 -2.41 5.99 -25.35 -0.15 -2.56 16 12 C -0.13 -2.46 6.99 -25.35 -0.18 -2.64 16 13 C 0.03 0.58 5.93 -2.09 -0.01 0.57 16 14 N -0.51 -11.20 5.01 -223.36 -1.12 -12.32 16 15 C 0.06 1.29 4.68 -3.82 -0.02 1.27 16 16 C -0.04 -0.65 5.82 -27.88 -0.16 -0.81 16 17 C 0.08 1.24 6.08 -84.22 -0.51 0.73 16 18 C -0.26 -3.17 11.07 29.12 0.32 -2.84 16 19 S 0.09 0.88 23.22 -107.50 -2.50 -1.62 16 20 C 0.03 0.33 12.23 51.58 0.63 0.96 16 21 N -0.46 -7.29 10.34 -11.90 -0.12 -7.42 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.06 1.48 7.85 -51.93 -0.41 1.07 16 24 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 28 H 0.06 1.01 7.86 -51.93 -0.41 0.61 16 29 H 0.09 2.03 7.72 -51.93 -0.40 1.63 16 30 H 0.02 0.39 7.77 -51.93 -0.40 -0.02 16 31 H 0.07 1.02 7.36 -51.93 -0.38 0.64 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.20 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -30.75 295.97 -9.08 -39.84 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.90 Total: -1.43 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.60 Total: -12.94 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.52 Total: -45.22 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.75 -9.08 -39.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.621 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds