Wall clock time and date at job start Mon Mar 30 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00291 * 2 1 4 4 H 1.48501 * 109.46697 * 274.97714 * 3 2 1 5 5 H 1.48502 * 109.47202 * 34.97692 * 3 2 1 6 6 H 1.48494 * 109.47166 * 154.97742 * 3 2 1 7 7 C 1.37880 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99888 * 188.31478 * 7 2 1 9 9 C 1.50697 * 120.00138 * 8.31846 * 7 2 1 10 10 H 1.09007 * 110.36664 * 302.97617 * 9 7 2 11 11 C 1.54380 * 110.41191 * 65.32209 * 9 7 2 12 12 C 1.54263 * 105.06042 * 142.75286 * 11 9 7 13 13 C 1.54379 * 105.14727 * 359.94712 * 12 11 9 14 14 N 1.48554 * 110.51235 * 180.55721 * 9 7 2 15 15 C 1.46894 * 111.00081 * 82.13133 * 14 9 7 16 16 C 1.53006 * 109.47143 * 190.00027 * 15 14 9 17 17 C 1.50706 * 109.47012 * 179.97438 * 16 15 14 18 18 C 1.33635 * 122.75004 * 124.73198 * 17 16 15 19 19 S 1.76192 * 107.92511 * 179.97438 * 18 17 16 20 20 C 1.70971 * 90.28326 * 0.27438 * 19 18 17 21 21 N 1.29028 * 110.16805 * 359.84327 * 20 19 18 22 22 H 0.97002 * 119.99138 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.32521 * 23.85629 * 11 9 7 24 24 H 1.08997 * 110.32554 * 261.64584 * 11 9 7 25 25 H 1.08998 * 110.32451 * 118.89545 * 12 11 9 26 26 H 1.09003 * 110.32273 * 241.00536 * 12 11 9 27 27 H 1.09003 * 110.40836 * 94.97835 * 13 12 11 28 28 H 1.09004 * 110.41445 * 217.41680 * 13 12 11 29 29 H 1.09006 * 109.47252 * 309.99895 * 15 14 9 30 30 H 1.08996 * 109.47466 * 69.99882 * 15 14 9 31 31 H 1.09000 * 109.46961 * 299.99630 * 16 15 14 32 32 H 1.08992 * 109.47035 * 60.00117 * 16 15 14 33 33 H 1.08001 * 126.04087 * 0.04006 * 18 17 16 34 34 H 1.08003 * 124.91792 * 179.83926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3915 2.1070 -1.3948 5 1 1.5033 2.6200 0.8026 6 1 3.5954 1.4120 0.5922 7 6 2.0045 -1.1941 0.0005 8 1 3.0759 -1.1990 0.1358 9 6 1.2628 -2.4924 -0.1877 10 1 0.4896 -2.6013 0.5729 11 6 0.6422 -2.5581 -1.5997 12 6 0.7887 -4.0311 -2.0338 13 6 1.4867 -4.7332 -0.8493 14 7 2.2035 -3.6411 -0.1384 15 6 2.4984 -4.0208 1.2497 16 6 3.6486 -5.0297 1.2691 17 6 3.9515 -5.4187 2.6932 18 6 3.9547 -6.6882 3.1107 19 16 4.3548 -6.6936 4.8266 20 6 4.4701 -4.9879 4.8138 21 7 4.2286 -4.5345 3.6302 22 1 -0.4849 0.8401 -0.0004 23 1 1.1862 -1.9061 -2.2831 24 1 -0.4103 -2.2768 -1.5641 25 1 -0.1919 -4.4728 -2.2113 26 1 1.4032 -4.1020 -2.9313 27 1 0.7490 -5.1939 -0.1922 28 1 2.1926 -5.4802 -1.2124 29 1 2.7831 -3.1342 1.8163 30 1 1.6131 -4.4705 1.6993 31 1 3.3638 -5.9163 0.7026 32 1 4.5338 -4.5800 0.8196 33 1 3.7495 -7.5574 2.5034 34 1 4.7101 -4.3780 5.6723 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:00 Heat of formation + Delta-G solvation = 23.953275 kcal Electronic energy + Delta-G solvation = -16252.970043 eV Core-core repulsion = 13697.481113 eV Total energy + Delta-G solvation = -2555.488930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86454 -39.53937 -35.04337 -34.25380 -31.80216 -30.16137 -28.94750 -26.31892 -25.86029 -23.85745 -21.49154 -21.34007 -20.43702 -18.84225 -18.34378 -17.04806 -16.60255 -16.39392 -15.95846 -15.50013 -15.06773 -14.76305 -14.16562 -14.11455 -14.08111 -13.52966 -13.19070 -12.94909 -12.87014 -12.51979 -12.42739 -12.12143 -11.94775 -11.80201 -11.41164 -11.36570 -10.91123 -10.55105 -10.51491 -10.38187 -9.69040 -9.14421 -8.15979 -6.21871 -0.16982 0.54990 0.80682 1.39397 1.40032 1.51822 1.86192 2.41897 3.14220 3.31191 3.48429 4.00908 4.08295 4.21565 4.26555 4.33384 4.44969 4.54855 4.59423 4.69762 4.71035 4.90292 5.00877 5.11131 5.16380 5.19529 5.29219 5.34296 5.50431 5.64976 5.71875 6.13695 6.40502 6.57144 6.87973 6.89357 7.44878 8.94031 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.005674 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.086173 B = 4933.708422 C = 5899.580053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.202 3.798 10 H -0.030 1.030 11 C -0.097 4.097 12 C -0.119 4.119 13 C 0.032 3.968 14 N -0.518 5.518 15 C 0.074 3.926 16 C -0.026 4.026 17 C 0.047 3.953 18 C -0.256 4.256 19 S 0.163 5.837 20 C 0.012 3.988 21 N -0.511 5.511 22 H 0.262 0.738 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.202 0.798 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -15.797 6.378 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.095 3.905 10 H -0.012 1.012 11 C -0.136 4.136 12 C -0.157 4.157 13 C -0.096 4.096 14 N -0.242 5.242 15 C -0.055 4.055 16 C -0.066 4.066 17 C -0.085 4.085 18 C -0.395 4.395 19 S 0.415 5.585 20 C -0.286 4.286 21 N -0.225 5.225 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.709 -15.731 6.849 18.810 hybrid contribution -0.910 1.488 -0.233 1.760 sum 6.799 -14.243 6.617 17.114 Atomic orbital electron populations 1.70102 1.07233 1.27376 1.51616 1.25700 0.95620 1.02362 0.94898 0.85568 0.78646 0.79303 0.78306 1.19699 1.20785 1.19685 1.21241 0.93712 0.91359 1.48836 0.93263 1.19980 0.88942 0.89099 0.92489 1.01229 1.22075 0.98383 0.95608 0.97551 1.22338 1.00413 0.94664 0.98257 1.23209 0.96459 0.94433 0.95477 1.65350 1.40700 1.04904 1.13238 1.21826 0.96031 0.97636 0.90010 1.20030 0.98250 0.99231 0.89092 1.20435 1.02199 0.88844 0.96995 1.27193 1.11397 1.01632 0.99253 1.83601 1.62931 1.06574 1.05417 1.28921 1.03032 0.97857 0.98786 1.66129 1.15604 1.39476 1.01315 0.92949 0.94196 0.94675 0.90829 0.90492 0.94888 0.88343 0.93578 0.97011 0.88258 0.90701 0.78106 0.76175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.86 12.96 21.45 0.28 -55.59 16 2 C 0.01 0.75 5.28 84.65 0.45 1.20 16 3 Si 0.96 46.05 29.55 68.60 2.03 48.08 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.51 -30.26 8.30 25.60 0.21 -30.04 16 8 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 9 C 0.20 10.86 2.08 44.32 0.09 10.95 16 10 H -0.03 -1.82 8.00 -2.38 -0.02 -1.84 16 11 C -0.10 -4.73 5.99 31.49 0.19 -4.54 16 12 C -0.12 -4.35 6.99 31.49 0.22 -4.13 16 13 C 0.03 1.14 5.93 86.42 0.51 1.65 16 14 N -0.52 -23.09 5.01 -860.58 -4.31 -27.40 16 15 C 0.07 3.10 4.68 86.31 0.40 3.50 16 16 C -0.03 -0.82 5.82 29.85 0.17 -0.65 16 17 C 0.05 1.39 6.08 41.52 0.25 1.64 16 18 C -0.26 -5.57 11.07 66.77 0.74 -4.83 16 19 S 0.16 2.85 23.22 -56.49 -1.31 1.54 16 20 C 0.01 0.26 12.23 130.65 1.60 1.86 16 21 N -0.51 -16.45 10.34 -191.55 -1.98 -18.43 16 22 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.04 2.04 7.85 -2.39 -0.02 2.02 16 24 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.03 1.15 7.75 -2.39 -0.02 1.13 16 28 H 0.10 2.84 7.86 -2.39 -0.02 2.82 16 29 H 0.05 2.27 7.72 -2.38 -0.02 2.25 16 30 H 0.01 0.49 7.77 -2.39 -0.02 0.47 16 31 H 0.10 2.56 7.36 -2.39 -0.02 2.54 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.53 16 33 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.22 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -70.16 295.97 0.61 -69.55 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.07 Total: 5.65 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.84 Total: -23.39 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.01 Total: -101.42 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -70.16 0.61 -69.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.499 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds