Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00333 * 2 1 4 4 H 1.48502 * 109.47151 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47320 * 119.99550 * 3 2 1 6 6 H 1.48497 * 109.47484 * 239.99855 * 3 2 1 7 7 C 1.37881 * 120.00065 * 180.27108 * 2 1 3 8 8 H 1.07998 * 120.00247 * 185.32004 * 7 2 1 9 9 C 1.50708 * 119.99908 * 5.32012 * 7 2 1 10 10 H 1.09004 * 109.46621 * 34.76458 * 9 7 2 11 11 C 1.50699 * 109.46865 * 274.76789 * 9 7 2 12 12 C 1.33637 * 122.75175 * 129.42124 * 11 9 7 13 13 S 1.76198 * 107.92410 * 179.97438 * 12 11 9 14 14 C 1.70975 * 90.28411 * 0.27177 * 13 12 11 15 15 N 1.29030 * 110.16389 * 359.83856 * 14 13 12 16 16 N 1.46895 * 109.47277 * 154.76327 * 9 7 2 17 17 C 1.46844 * 110.99997 * 54.93744 * 16 9 7 18 18 C 1.53036 * 109.52181 * 174.16096 * 17 16 9 19 19 C 1.53123 * 109.28061 * 59.18195 * 18 17 16 20 20 C 1.53116 * 109.15484 * 302.34529 * 19 18 17 21 21 C 1.46852 * 110.99823 * 290.72903 * 16 9 7 22 22 H 0.97001 * 119.99729 * 175.00190 * 1 2 3 23 23 H 1.07998 * 126.03981 * 0.02562 * 12 11 9 24 24 H 1.07992 * 124.91501 * 179.84345 * 14 13 12 25 25 H 1.08997 * 109.46377 * 294.17830 * 17 16 9 26 26 H 1.09001 * 109.46314 * 54.14460 * 17 16 9 27 27 H 1.08994 * 109.50485 * 299.23601 * 18 17 16 28 28 H 1.09010 * 109.49882 * 179.12036 * 18 17 16 29 29 H 1.08998 * 109.52463 * 182.43763 * 19 18 17 30 30 H 1.09003 * 109.57190 * 62.27831 * 19 18 17 31 31 H 1.08994 * 109.50542 * 297.70523 * 20 19 18 32 32 H 1.09010 * 109.53070 * 177.61414 * 20 19 18 33 33 H 1.08998 * 109.46587 * 305.85459 * 21 16 9 34 34 H 1.09003 * 109.46540 * 65.83552 * 21 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0046 -1.1941 -0.0056 8 1 3.0811 -1.1965 0.0811 9 6 1.2559 -2.4958 -0.1328 10 1 0.3929 -2.3564 -0.7840 11 6 0.7906 -2.9428 1.2291 12 6 -0.4726 -3.2988 1.4807 13 16 -0.5811 -3.7479 3.1810 14 6 1.0812 -3.4046 3.3865 15 7 1.5948 -3.0086 2.2710 16 7 2.1426 -3.5166 -0.7068 17 6 3.3753 -3.6460 0.0807 18 6 4.2060 -4.8131 -0.4577 19 6 4.5429 -4.5573 -1.9294 20 6 3.2430 -4.3782 -2.7186 21 6 2.4402 -3.2237 -2.1147 22 1 -0.4850 -0.8369 -0.0732 23 1 -1.2836 -3.3102 0.7676 24 1 1.6228 -3.5047 4.3154 25 1 3.9524 -2.7244 0.0058 26 1 3.1216 -3.8318 1.1244 27 1 3.6347 -5.7372 -0.3705 28 1 5.1282 -4.8989 0.1171 29 1 5.0976 -5.4062 -2.3290 30 1 5.1478 -3.6545 -2.0140 31 1 2.6566 -5.2955 -2.6670 32 1 3.4766 -4.1537 -3.7594 33 1 1.5075 -3.1028 -2.6656 34 1 3.0220 -2.3042 -2.1793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259715191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = 43.073983 kcal Electronic energy + Delta-G solvation = -17176.944261 eV Core-core repulsion = 14622.284467 eV Total energy + Delta-G solvation = -2554.659794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.35549 -37.71606 -34.06797 -31.77405 -30.13448 -29.68798 -26.36333 -24.29184 -23.78397 -22.23127 -21.63863 -19.06542 -18.82015 -17.56549 -16.52560 -15.10576 -14.87199 -14.10798 -13.94465 -13.76055 -13.64956 -13.45569 -12.97339 -12.53835 -12.25454 -12.15750 -11.87212 -11.37417 -10.93826 -10.70614 -10.64963 -10.40529 -10.25091 -10.09443 -9.77522 -9.65207 -9.18318 -8.73968 -8.63691 -8.52397 -8.02297 -7.04973 -6.43560 -4.18336 1.53528 2.16117 2.47044 3.38787 3.40368 3.58646 3.76927 4.46077 4.94527 5.10934 5.29040 5.37768 5.42837 5.49120 5.88780 5.94854 6.07226 6.12049 6.13664 6.22587 6.35836 6.40104 6.47316 6.52445 6.66476 6.78394 6.82919 6.96072 7.03012 7.24999 7.82078 8.09673 8.21102 8.43356 8.66091 8.76029 9.52000 10.91000 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.011965 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.259022 B = 2339.608624 C = 3742.892667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.060 0.940 9 C 0.258 3.742 10 H 0.056 0.944 11 C 0.124 3.876 12 C -0.259 4.259 13 S 0.035 5.965 14 C 0.009 3.991 15 N -0.436 5.436 16 N -0.529 5.529 17 C 0.055 3.945 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.114 4.114 21 C 0.066 3.934 22 H 0.269 0.731 23 H 0.164 0.836 24 H 0.186 0.814 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -8.124 1.052 8.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.078 0.922 9 C 0.148 3.852 10 H 0.073 0.927 11 C -0.007 4.007 12 C -0.397 4.397 13 S 0.285 5.715 14 C -0.290 4.290 15 N -0.149 5.149 16 N -0.253 5.253 17 C -0.073 4.073 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.062 4.062 22 H 0.081 0.919 23 H 0.182 0.818 24 H 0.203 0.797 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.315 -7.143 1.785 7.718 hybrid contribution 0.800 -0.460 -0.652 1.130 sum 3.115 -7.603 1.133 8.294 Atomic orbital electron populations 1.70812 1.06817 1.31049 1.44984 1.25797 0.96405 1.02646 0.93096 0.83606 0.75060 0.75506 0.76634 1.20761 1.21434 1.21333 1.22319 0.95214 0.91400 1.54993 0.92169 1.18082 0.93216 0.88702 0.85172 0.92670 1.21102 0.88077 0.94181 0.97315 1.26671 1.02334 1.13654 0.97051 1.83501 1.13987 1.64992 1.09046 1.28285 0.94898 1.04890 1.00945 1.66059 1.37471 1.13116 0.98258 1.62305 1.15025 1.46650 1.01356 1.22107 0.90667 0.95857 0.98686 1.21639 0.98868 0.99623 0.95351 1.21537 0.97270 1.00541 0.96129 1.21590 0.96264 0.99508 0.97866 1.21799 0.98651 0.96019 0.89771 0.91948 0.81848 0.79700 0.94459 0.89480 0.92324 0.92839 0.93068 0.92583 0.92045 0.92601 0.92173 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.63 55.43 0.76 -25.39 16 2 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 3 Si 1.06 25.03 29.91 -169.99 -5.08 19.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.60 -16.06 6.90 -34.43 -0.24 -16.30 16 8 H 0.06 1.67 5.86 -52.49 -0.31 1.36 16 9 C 0.26 6.29 1.77 -70.02 -0.12 6.17 16 10 H 0.06 1.44 6.67 -51.93 -0.35 1.09 16 11 C 0.12 2.87 5.19 -84.23 -0.44 2.43 16 12 C -0.26 -5.38 11.08 29.12 0.32 -5.06 16 13 S 0.04 0.60 23.22 -107.50 -2.50 -1.90 16 14 C 0.01 0.16 12.23 51.59 0.63 0.79 16 15 N -0.44 -9.69 7.95 -11.90 -0.09 -9.78 16 16 N -0.53 -11.45 4.60 -229.48 -1.06 -12.51 16 17 C 0.06 1.14 4.73 -3.84 -0.02 1.12 16 18 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 19 C -0.12 -1.80 6.00 -26.61 -0.16 -1.96 16 20 C -0.11 -1.83 6.09 -26.65 -0.16 -1.99 16 21 C 0.07 1.31 5.18 -3.83 -0.02 1.29 16 22 H 0.27 7.70 6.63 -40.82 -0.27 7.43 16 23 H 0.16 3.19 8.06 -52.49 -0.42 2.76 16 24 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 25 H 0.04 0.85 6.21 -51.93 -0.32 0.53 16 26 H 0.09 1.91 5.44 -51.93 -0.28 1.63 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 34 H 0.04 0.87 7.58 -51.93 -0.39 0.48 16 LS Contribution 282.72 15.07 4.26 4.26 Total: -1.00 -29.42 282.72 -8.70 -38.11 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.52 Total: 2.24 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.46 Total: -14.99 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.39 Total: -47.68 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.50 Total: -1.90 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.42 -8.70 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259715191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.186 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds