Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00333 * 2 1 4 4 H 1.48502 * 109.47151 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47320 * 119.99550 * 3 2 1 6 6 H 1.48497 * 109.47484 * 239.99855 * 3 2 1 7 7 C 1.37881 * 120.00065 * 180.27108 * 2 1 3 8 8 H 1.07998 * 120.00247 * 185.32004 * 7 2 1 9 9 C 1.50708 * 119.99908 * 5.32012 * 7 2 1 10 10 H 1.09004 * 109.46621 * 34.76458 * 9 7 2 11 11 C 1.50699 * 109.46865 * 274.76789 * 9 7 2 12 12 C 1.33637 * 122.75175 * 129.42124 * 11 9 7 13 13 S 1.76198 * 107.92410 * 179.97438 * 12 11 9 14 14 C 1.70975 * 90.28411 * 0.27177 * 13 12 11 15 15 N 1.29030 * 110.16389 * 359.83856 * 14 13 12 16 16 N 1.46895 * 109.47277 * 154.76327 * 9 7 2 17 17 C 1.46844 * 110.99997 * 54.93744 * 16 9 7 18 18 C 1.53036 * 109.52181 * 174.16096 * 17 16 9 19 19 C 1.53123 * 109.28061 * 59.18195 * 18 17 16 20 20 C 1.53116 * 109.15484 * 302.34529 * 19 18 17 21 21 C 1.46852 * 110.99823 * 290.72903 * 16 9 7 22 22 H 0.97001 * 119.99729 * 175.00190 * 1 2 3 23 23 H 1.07998 * 126.03981 * 0.02562 * 12 11 9 24 24 H 1.07992 * 124.91501 * 179.84345 * 14 13 12 25 25 H 1.08997 * 109.46377 * 294.17830 * 17 16 9 26 26 H 1.09001 * 109.46314 * 54.14460 * 17 16 9 27 27 H 1.08994 * 109.50485 * 299.23601 * 18 17 16 28 28 H 1.09010 * 109.49882 * 179.12036 * 18 17 16 29 29 H 1.08998 * 109.52463 * 182.43763 * 19 18 17 30 30 H 1.09003 * 109.57190 * 62.27831 * 19 18 17 31 31 H 1.08994 * 109.50542 * 297.70523 * 20 19 18 32 32 H 1.09010 * 109.53070 * 177.61414 * 20 19 18 33 33 H 1.08998 * 109.46587 * 305.85459 * 21 16 9 34 34 H 1.09003 * 109.46540 * 65.83552 * 21 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0046 -1.1941 -0.0056 8 1 3.0811 -1.1965 0.0811 9 6 1.2559 -2.4958 -0.1328 10 1 0.3929 -2.3564 -0.7840 11 6 0.7906 -2.9428 1.2291 12 6 -0.4726 -3.2988 1.4807 13 16 -0.5811 -3.7479 3.1810 14 6 1.0812 -3.4046 3.3865 15 7 1.5948 -3.0086 2.2710 16 7 2.1426 -3.5166 -0.7068 17 6 3.3753 -3.6460 0.0807 18 6 4.2060 -4.8131 -0.4577 19 6 4.5429 -4.5573 -1.9294 20 6 3.2430 -4.3782 -2.7186 21 6 2.4402 -3.2237 -2.1147 22 1 -0.4850 -0.8369 -0.0732 23 1 -1.2836 -3.3102 0.7676 24 1 1.6228 -3.5047 4.3154 25 1 3.9524 -2.7244 0.0058 26 1 3.1216 -3.8318 1.1244 27 1 3.6347 -5.7372 -0.3705 28 1 5.1282 -4.8989 0.1171 29 1 5.0976 -5.4062 -2.3290 30 1 5.1478 -3.6545 -2.0140 31 1 2.6566 -5.2955 -2.6670 32 1 3.4766 -4.1537 -3.7594 33 1 1.5075 -3.1028 -2.6656 34 1 3.0220 -2.3042 -2.1793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259715191.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = 24.145017 kcal Electronic energy + Delta-G solvation = -17177.765082 eV Core-core repulsion = 14622.284467 eV Total energy + Delta-G solvation = -2555.480616 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99690 -39.26557 -35.85178 -33.57845 -31.62738 -31.28454 -28.17424 -25.95320 -25.55276 -23.72820 -23.25661 -20.67189 -20.43218 -19.26081 -18.24335 -16.73053 -16.48481 -15.79963 -15.69543 -15.53347 -15.08428 -14.99602 -14.52835 -14.07280 -13.91241 -13.70444 -13.57732 -12.89193 -12.77060 -12.42941 -12.28713 -12.03819 -11.95103 -11.59129 -11.23298 -11.21045 -11.08106 -10.60753 -10.26148 -10.16352 -9.58672 -8.90781 -8.53700 -6.33335 0.00467 0.68478 0.93180 1.46047 1.52278 1.71587 2.12167 2.51381 3.17018 3.37278 3.65879 4.00915 4.08001 4.15997 4.38907 4.46049 4.49017 4.61919 4.72362 4.74417 4.82944 4.95463 5.03432 5.11461 5.13794 5.21005 5.29642 5.33570 5.52063 5.54222 5.87846 6.08960 6.47845 6.51894 6.57599 7.11854 7.43596 8.75567 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.011965 C = 0.007479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.259022 B = 2339.608624 C = 3742.892667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.021 4.021 3 Si 1.103 2.897 4 H -0.283 1.283 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.596 4.596 8 H 0.044 0.956 9 C 0.259 3.741 10 H 0.026 0.974 11 C 0.102 3.898 12 C -0.288 4.288 13 S 0.127 5.873 14 C 0.008 3.992 15 N -0.478 5.478 16 N -0.528 5.528 17 C 0.060 3.940 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.106 4.106 21 C 0.064 3.936 22 H 0.260 0.740 23 H 0.165 0.835 24 H 0.227 0.773 25 H 0.007 0.993 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -9.597 1.875 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.927 3.073 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.636 4.636 8 H 0.062 0.938 9 C 0.149 3.851 10 H 0.044 0.956 11 C -0.029 4.029 12 C -0.427 4.427 13 S 0.377 5.623 14 C -0.290 4.290 15 N -0.193 5.193 16 N -0.252 5.252 17 C -0.069 4.069 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.065 4.065 22 H 0.070 0.930 23 H 0.182 0.818 24 H 0.243 0.757 25 H 0.025 0.975 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 3.185 -8.642 2.611 9.573 hybrid contribution 0.474 -0.116 -0.813 0.949 sum 3.660 -8.758 1.798 9.660 Atomic orbital electron populations 1.70899 1.07505 1.30514 1.47688 1.26936 0.96588 1.05696 0.92869 0.83091 0.74342 0.72450 0.77456 1.20849 1.20657 1.19726 1.22434 0.94479 0.92803 1.53860 0.93771 1.17852 0.92409 0.88768 0.86111 0.95625 1.20796 0.89146 0.96067 0.96940 1.26879 1.01801 1.13654 1.00391 1.83100 1.11906 1.62763 1.04483 1.29023 0.96325 1.02524 1.01165 1.66036 1.38539 1.15519 0.99157 1.62360 1.15328 1.45328 1.02167 1.22067 0.90172 0.96267 0.98355 1.21600 0.98908 0.97670 0.96610 1.21541 0.96967 1.01704 0.94942 1.21555 0.96073 0.97758 0.98962 1.21891 0.98515 0.96917 0.89172 0.92961 0.81754 0.75686 0.97454 0.90746 0.91817 0.90918 0.89636 0.93179 0.91320 0.90205 0.93118 0.96785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.63 21.45 0.29 -55.44 16 2 C -0.02 -1.17 5.45 84.66 0.46 -0.71 16 3 Si 1.10 51.49 29.91 68.60 2.05 53.54 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.60 -33.24 6.90 25.60 0.18 -33.06 16 8 H 0.04 2.56 5.86 -2.91 -0.02 2.54 16 9 C 0.26 13.19 1.77 43.43 0.08 13.26 16 10 H 0.03 1.44 6.67 -2.39 -0.02 1.42 16 11 C 0.10 4.80 5.19 41.52 0.22 5.01 16 12 C -0.29 -12.04 11.08 66.78 0.74 -11.30 16 13 S 0.13 4.01 23.22 -56.49 -1.31 2.70 16 14 C 0.01 0.26 12.23 130.65 1.60 1.86 16 15 N -0.48 -21.19 7.95 -191.56 -1.52 -22.71 16 16 N -0.53 -23.47 4.60 -879.93 -4.05 -27.52 16 17 C 0.06 2.50 4.73 86.33 0.41 2.91 16 18 C -0.11 -3.50 6.09 30.65 0.19 -3.32 16 19 C -0.11 -3.22 6.00 30.67 0.18 -3.04 16 20 C -0.11 -3.21 6.09 30.64 0.19 -3.02 16 21 C 0.06 2.57 5.18 86.32 0.45 3.02 16 22 H 0.26 15.60 6.63 -92.71 -0.61 14.99 16 23 H 0.16 6.60 8.06 -2.91 -0.02 6.57 16 24 H 0.23 5.54 8.06 -2.91 -0.02 5.51 16 25 H 0.01 0.34 6.21 -2.39 -0.01 0.33 16 26 H 0.07 3.31 5.44 -2.39 -0.01 3.30 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.05 2.09 8.02 -2.39 -0.02 2.07 16 34 H 0.01 0.63 7.58 -2.39 -0.02 0.61 16 Total: -1.00 -66.07 282.72 1.39 -64.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.24 Total: 13.12 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.68 Total: -28.38 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -5.28 Total: -105.67 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.31 Total: 2.70 kcal Total: -66.07 1.39 -64.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259715191.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.825 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds