Wall clock time and date at job start Mon Mar 30 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35957 * 117.00033 * 2 1 4 4 C 1.38793 * 120.03804 * 84.12880 * 3 2 1 5 5 F 1.35105 * 120.06914 * 0.02562 * 4 3 2 6 6 C 1.38750 * 119.86491 * 180.02562 * 4 3 2 7 7 O 1.35956 * 120.03548 * 179.97438 * 6 4 3 8 8 C 1.38745 * 119.92929 * 359.97438 * 6 4 3 9 9 C 1.38173 * 120.07060 * 0.02562 * 8 6 4 10 10 C 1.38223 * 120.13860 * 359.71780 * 9 8 6 11 11 C 1.50697 * 119.96924 * 180.30252 * 10 9 8 12 12 C 1.50702 * 115.55291 * 120.78388 * 11 10 9 13 13 H 1.07996 * 119.99906 * 144.42127 * 12 11 10 14 14 C 1.37874 * 119.99832 * 324.42440 * 12 11 10 15 15 N 1.31517 * 120.00005 * 166.91152 * 14 12 11 16 16 Si 1.86798 * 119.99930 * 346.91334 * 14 12 11 17 17 H 1.48504 * 109.47277 * 86.21964 * 16 14 12 18 18 H 1.48503 * 109.47101 * 206.21484 * 16 14 12 19 19 H 1.48492 * 109.47308 * 326.21468 * 16 14 12 20 20 C 1.52997 * 117.49805 * 335.10902 * 11 10 9 21 21 C 1.53004 * 117.49630 * 266.45332 * 11 10 9 22 22 H 1.09000 * 109.47067 * 184.91028 * 1 2 3 23 23 H 1.09001 * 109.47547 * 304.91213 * 1 2 3 24 24 H 1.09001 * 109.46812 * 64.91377 * 1 2 3 25 25 H 0.96706 * 113.99708 * 89.99864 * 7 6 4 26 26 H 1.08006 * 119.96399 * 180.02562 * 8 6 4 27 27 H 1.07999 * 119.93509 * 179.97438 * 9 8 6 28 28 H 0.97000 * 120.00141 * 185.00599 * 15 14 12 29 29 H 1.08998 * 117.49975 * 0.02562 * 20 11 10 30 30 H 1.09007 * 117.49963 * 145.02113 * 20 11 10 31 31 H 1.09003 * 117.49839 * 214.97785 * 21 11 10 32 32 H 1.09004 * 117.49950 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.2521 1.8862 1.1952 5 9 1.8401 1.3404 2.3604 6 6 2.8819 3.1225 1.1910 7 8 3.0849 3.7868 2.3597 8 6 3.3043 3.6801 -0.0072 9 6 3.0979 3.0059 -1.1955 10 6 2.4755 1.7717 -1.1940 11 6 2.2585 1.0366 -2.4915 12 6 2.8982 -0.3249 -2.5821 13 1 2.4001 -1.1211 -3.1153 14 6 4.1193 -0.5540 -1.9843 15 7 4.5586 -1.7848 -1.8367 16 14 5.1497 0.8838 -1.3841 17 1 4.7333 1.2504 -0.0066 18 1 6.5838 0.4981 -1.3815 19 1 4.9514 2.0460 -2.2870 20 6 2.1871 1.8703 -3.7724 21 6 0.9172 1.2355 -3.2003 22 1 -0.3633 -1.0239 0.0880 23 1 -0.3634 0.5881 0.8427 24 1 -0.3633 0.4357 -0.9307 25 1 3.9268 3.5803 2.7884 26 1 3.7950 4.6423 -0.0111 27 1 3.4272 3.4422 -2.1269 28 1 5.3822 -1.9509 -1.3520 29 1 2.2976 2.9504 -3.6767 30 1 2.6026 1.4339 -4.6808 31 1 0.4976 0.3817 -3.7324 32 1 0.1916 1.8977 -2.7278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:35 Heat of formation + Delta-G solvation = -57.365980 kcal Electronic energy + Delta-G solvation = -19474.908143 eV Core-core repulsion = 16317.387018 eV Total energy + Delta-G solvation = -3157.521125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.48861 -39.89902 -37.94832 -36.78245 -35.14883 -32.18105 -29.76756 -29.15301 -26.38164 -25.84560 -22.73407 -22.53189 -21.14066 -19.42982 -18.55978 -17.28959 -17.00179 -16.39742 -15.88120 -15.42889 -14.85382 -14.67571 -14.39321 -14.14623 -13.90078 -13.32809 -13.01903 -12.63412 -12.43748 -12.17889 -11.75509 -11.37390 -10.92321 -10.71823 -10.51896 -10.39064 -10.04945 -9.68987 -9.44206 -9.36325 -9.18288 -8.37846 -8.20765 -7.87903 -6.10759 -4.05191 1.35507 1.38846 3.28605 3.35852 3.39531 3.63805 3.99066 4.42565 4.53738 4.56048 4.73319 5.15034 5.30525 5.40941 5.51679 5.67240 5.80762 5.83431 6.00044 6.08076 6.12649 6.19276 6.22791 6.35106 6.41211 6.62421 6.73713 6.92782 6.96959 7.10041 7.67647 7.70386 8.06707 8.46337 8.89761 9.51582 10.98824 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.012028 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.672614 B = 2327.420382 C = 2513.300813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.292 6.292 3 C 0.108 3.892 4 C 0.042 3.958 5 F -0.133 7.133 6 C 0.066 3.934 7 O -0.490 6.490 8 C -0.132 4.132 9 C -0.112 4.112 10 C -0.030 4.030 11 C 0.049 3.951 12 C -0.470 4.470 13 H 0.080 0.920 14 C 0.090 3.910 15 N -0.885 5.885 16 Si 0.859 3.141 17 H -0.273 1.273 18 H -0.297 1.297 19 H -0.254 1.254 20 C -0.207 4.207 21 C -0.179 4.179 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.386 0.614 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.265 0.735 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 9.587 3.852 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.208 6.208 3 C 0.062 3.938 4 C 0.022 3.978 5 F -0.111 7.111 6 C 0.020 3.980 7 O -0.299 6.299 8 C -0.151 4.151 9 C -0.130 4.130 10 C -0.031 4.031 11 C 0.048 3.952 12 C -0.507 4.507 13 H 0.098 0.902 14 C -0.114 4.114 15 N -0.521 5.521 16 Si 0.687 3.313 17 H -0.198 1.198 18 H -0.225 1.225 19 H -0.179 1.179 20 C -0.245 4.245 21 C -0.216 4.216 22 H 0.110 0.890 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.242 0.758 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.412 9.483 3.798 11.128 hybrid contribution 0.968 0.543 0.837 1.391 sum -3.444 10.027 4.636 11.571 Atomic orbital electron populations 1.22940 0.79807 1.02902 0.99961 1.86270 1.18728 1.22104 1.93662 1.18280 0.98770 0.86980 0.89763 1.18569 1.04428 0.92833 0.81993 1.91435 1.88391 1.85486 1.45803 1.18138 1.02557 0.90494 0.86772 1.84835 1.43393 1.66820 1.34848 1.21184 1.01701 1.00980 0.91190 1.21073 0.99127 0.94410 0.98388 1.19880 0.95696 0.92326 0.95214 1.17993 0.97128 0.95391 0.84658 1.20101 1.02887 0.92231 1.35460 0.90215 1.24877 0.97153 0.95059 0.94334 1.69855 1.22835 1.19319 1.40093 0.87267 0.79500 0.84036 0.80452 1.19826 1.22466 1.17869 1.23262 1.02750 0.97404 1.01062 1.22821 0.90764 1.02459 1.05566 0.88955 0.94759 0.93201 0.75845 0.84649 0.84245 0.92451 0.91049 0.89157 0.89403 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.13 101.05 1.12 1.79 16 2 O -0.29 -6.65 9.10 -19.61 -0.18 -6.83 16 3 C 0.11 2.37 4.65 -39.20 -0.18 2.19 16 4 C 0.04 0.86 7.09 -39.19 -0.28 0.59 16 5 F -0.13 -2.69 16.95 2.25 0.04 -2.65 16 6 C 0.07 1.19 6.67 -39.20 -0.26 0.93 16 7 O -0.49 -7.53 13.37 -19.60 -0.26 -7.79 16 8 C -0.13 -2.24 9.68 -39.42 -0.38 -2.62 16 9 C -0.11 -2.11 5.89 -39.61 -0.23 -2.35 16 10 C -0.03 -0.65 2.60 -104.46 -0.27 -0.93 16 11 C 0.05 1.12 1.21 -156.81 -0.19 0.93 16 12 C -0.47 -12.83 8.76 -34.44 -0.30 -13.14 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.09 2.56 5.40 -17.82 -0.10 2.46 16 15 N -0.89 -26.86 13.95 55.43 0.77 -26.08 16 16 Si 0.86 21.33 23.23 -169.99 -3.95 17.38 16 17 H -0.27 -6.67 5.95 56.52 0.34 -6.34 16 18 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.25 -5.80 5.77 56.52 0.33 -5.48 16 20 C -0.21 -4.06 9.45 -26.70 -0.25 -4.32 16 21 C -0.18 -3.46 9.19 -26.69 -0.25 -3.71 16 22 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.82 7.33 -51.93 -0.38 0.44 16 25 H 0.39 4.18 9.06 45.56 0.41 4.59 16 26 H 0.14 1.83 8.06 -52.48 -0.42 1.40 16 27 H 0.14 2.41 6.18 -52.49 -0.32 2.09 16 28 H 0.27 7.65 8.32 -40.82 -0.34 7.31 16 29 H 0.07 1.24 6.79 -51.93 -0.35 0.89 16 30 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -31.85 271.63 -3.93 -35.78 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -2.88 Total: 4.26 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.57 Total: -18.17 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.08 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.44 Total: -14.62 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -3.95 Total: 17.38 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.85 -3.93 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.581 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds