Wall clock time and date at job start Mon Mar 30 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35957 * 117.00033 * 2 1 4 4 C 1.38793 * 120.03804 * 84.12880 * 3 2 1 5 5 F 1.35105 * 120.06914 * 0.02562 * 4 3 2 6 6 C 1.38750 * 119.86491 * 180.02562 * 4 3 2 7 7 O 1.35956 * 120.03548 * 179.97438 * 6 4 3 8 8 C 1.38745 * 119.92929 * 359.97438 * 6 4 3 9 9 C 1.38173 * 120.07060 * 0.02562 * 8 6 4 10 10 C 1.38223 * 120.13860 * 359.71780 * 9 8 6 11 11 C 1.50697 * 119.96924 * 180.30252 * 10 9 8 12 12 C 1.50702 * 115.55291 * 120.78388 * 11 10 9 13 13 H 1.07996 * 119.99906 * 144.42127 * 12 11 10 14 14 C 1.37874 * 119.99832 * 324.42440 * 12 11 10 15 15 N 1.31517 * 120.00005 * 166.91152 * 14 12 11 16 16 Si 1.86798 * 119.99930 * 346.91334 * 14 12 11 17 17 H 1.48504 * 109.47277 * 86.21964 * 16 14 12 18 18 H 1.48503 * 109.47101 * 206.21484 * 16 14 12 19 19 H 1.48492 * 109.47308 * 326.21468 * 16 14 12 20 20 C 1.52997 * 117.49805 * 335.10902 * 11 10 9 21 21 C 1.53004 * 117.49630 * 266.45332 * 11 10 9 22 22 H 1.09000 * 109.47067 * 184.91028 * 1 2 3 23 23 H 1.09001 * 109.47547 * 304.91213 * 1 2 3 24 24 H 1.09001 * 109.46812 * 64.91377 * 1 2 3 25 25 H 0.96706 * 113.99708 * 89.99864 * 7 6 4 26 26 H 1.08006 * 119.96399 * 180.02562 * 8 6 4 27 27 H 1.07999 * 119.93509 * 179.97438 * 9 8 6 28 28 H 0.97000 * 120.00141 * 185.00599 * 15 14 12 29 29 H 1.08998 * 117.49975 * 0.02562 * 20 11 10 30 30 H 1.09007 * 117.49963 * 145.02113 * 20 11 10 31 31 H 1.09003 * 117.49839 * 214.97785 * 21 11 10 32 32 H 1.09004 * 117.49950 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.2521 1.8862 1.1952 5 9 1.8401 1.3404 2.3604 6 6 2.8819 3.1225 1.1910 7 8 3.0849 3.7868 2.3597 8 6 3.3043 3.6801 -0.0072 9 6 3.0979 3.0059 -1.1955 10 6 2.4755 1.7717 -1.1940 11 6 2.2585 1.0366 -2.4915 12 6 2.8982 -0.3249 -2.5821 13 1 2.4001 -1.1211 -3.1153 14 6 4.1193 -0.5540 -1.9843 15 7 4.5586 -1.7848 -1.8367 16 14 5.1497 0.8838 -1.3841 17 1 4.7333 1.2504 -0.0066 18 1 6.5838 0.4981 -1.3815 19 1 4.9514 2.0460 -2.2870 20 6 2.1871 1.8703 -3.7724 21 6 0.9172 1.2355 -3.2003 22 1 -0.3633 -1.0239 0.0880 23 1 -0.3634 0.5881 0.8427 24 1 -0.3633 0.4357 -0.9307 25 1 3.9268 3.5803 2.7884 26 1 3.7950 4.6423 -0.0111 27 1 3.4272 3.4422 -2.1269 28 1 5.3822 -1.9509 -1.3520 29 1 2.2976 2.9504 -3.6767 30 1 2.6026 1.4339 -4.6808 31 1 0.4976 0.3817 -3.7324 32 1 0.1916 1.8977 -2.7278 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:35 Heat of formation + Delta-G solvation = -81.017119 kcal Electronic energy + Delta-G solvation = -19475.933733 eV Core-core repulsion = 16317.387018 eV Total energy + Delta-G solvation = -3158.546715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.99294 -41.37416 -39.31215 -38.36846 -36.58292 -34.26411 -31.20121 -30.59458 -27.90825 -27.73117 -24.24681 -23.99702 -22.65837 -21.14252 -19.91034 -19.09500 -18.47840 -17.87433 -17.42778 -17.06042 -16.47352 -16.22918 -15.92005 -15.59357 -15.37558 -14.88221 -14.69045 -14.41161 -13.81402 -13.79650 -13.33904 -12.87834 -12.67576 -12.37437 -12.07546 -11.86670 -11.68168 -11.56804 -11.17861 -10.91792 -10.89782 -10.36662 -9.67111 -9.38352 -8.24109 -6.20686 -0.07596 -0.03802 1.33869 1.38207 1.46948 2.21684 2.42257 2.61108 2.89935 3.08709 3.26536 3.53347 3.74161 3.94634 4.11488 4.30512 4.34094 4.47934 4.51752 4.59045 4.64361 4.72938 4.83751 4.91251 5.00273 5.12018 5.27117 5.43109 5.53369 5.56929 5.73020 6.32946 6.52960 6.63638 6.74876 7.38908 8.89161 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019257 B = 0.012028 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.672614 B = 2327.420382 C = 2513.300813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.087 3.913 4 C 0.015 3.985 5 F -0.140 7.140 6 C 0.080 3.920 7 O -0.489 6.489 8 C -0.119 4.119 9 C -0.111 4.111 10 C -0.054 4.054 11 C 0.018 3.982 12 C -0.464 4.464 13 H 0.032 0.968 14 C 0.029 3.971 15 N -0.944 5.944 16 Si 0.916 3.084 17 H -0.268 1.268 18 H -0.312 1.312 19 H -0.214 1.214 20 C -0.185 4.185 21 C -0.166 4.166 22 H 0.103 0.897 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.410 0.590 26 H 0.181 0.819 27 H 0.163 0.837 28 H 0.261 0.739 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 13.622 4.107 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.249 6.249 3 C 0.042 3.958 4 C -0.005 4.005 5 F -0.119 7.119 6 C 0.034 3.966 7 O -0.302 6.302 8 C -0.137 4.137 9 C -0.129 4.129 10 C -0.055 4.055 11 C 0.017 3.983 12 C -0.501 4.501 13 H 0.050 0.950 14 C -0.169 4.169 15 N -0.584 5.584 16 Si 0.742 3.258 17 H -0.193 1.193 18 H -0.241 1.241 19 H -0.137 1.137 20 C -0.222 4.222 21 C -0.203 4.203 22 H 0.122 0.878 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.269 0.731 26 H 0.198 0.802 27 H 0.181 0.819 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.352 13.551 4.045 14.797 hybrid contribution 0.804 -0.738 0.787 1.346 sum -3.549 12.813 4.833 14.147 Atomic orbital electron populations 1.23119 0.77819 1.04093 1.00862 1.86188 1.21075 1.23662 1.93978 1.18572 0.99517 0.86917 0.90816 1.18863 1.06019 0.94166 0.81446 1.91405 1.88685 1.85839 1.45969 1.18271 1.00894 0.89210 0.88231 1.84781 1.45223 1.66058 1.34097 1.21603 1.00342 1.02128 0.89643 1.21379 0.98061 0.93295 1.00195 1.19797 0.97806 0.93859 0.93994 1.17814 0.99449 0.94054 0.86940 1.20251 1.02426 0.93793 1.33640 0.95005 1.25694 0.98563 0.97451 0.95156 1.70030 1.23611 1.21960 1.42778 0.86381 0.76418 0.82128 0.80873 1.19293 1.24136 1.13654 1.23276 1.01599 0.98889 0.98481 1.22856 0.90603 1.02497 1.04366 0.87848 0.93295 0.92617 0.73109 0.80177 0.81928 0.93000 0.87439 0.89831 0.90299 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 11.13 113.37 1.26 2.47 16 2 O -0.33 -15.37 9.10 -93.07 -0.85 -16.22 16 3 C 0.09 3.73 4.65 22.52 0.10 3.84 16 4 C 0.02 0.60 7.09 22.53 0.16 0.76 16 5 F -0.14 -5.57 16.95 44.97 0.76 -4.81 16 6 C 0.08 2.56 6.67 22.51 0.15 2.71 16 7 O -0.49 -12.84 13.37 -93.05 -1.24 -14.09 16 8 C -0.12 -3.36 9.68 22.38 0.22 -3.14 16 9 C -0.11 -3.64 5.89 22.25 0.13 -3.51 16 10 C -0.05 -2.18 2.60 -19.76 -0.05 -2.23 16 11 C 0.02 0.80 1.21 -53.67 -0.06 0.74 16 12 C -0.46 -26.04 8.76 25.60 0.22 -25.81 16 13 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 14 C 0.03 1.70 5.40 84.65 0.46 2.16 16 15 N -0.94 -60.24 13.95 21.45 0.30 -59.94 16 16 Si 0.92 43.64 23.23 68.60 1.59 45.23 16 17 H -0.27 -12.39 5.95 99.48 0.59 -11.80 16 18 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 19 H -0.21 -8.66 5.77 99.48 0.57 -8.09 16 20 C -0.19 -6.65 9.45 30.62 0.29 -6.36 16 21 C -0.17 -6.10 9.19 30.62 0.28 -5.82 16 22 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.82 7.33 -2.39 -0.02 1.80 16 25 H 0.41 6.96 9.06 -74.05 -0.67 6.29 16 26 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 27 H 0.16 4.50 6.18 -2.91 -0.02 4.48 16 28 H 0.26 15.87 8.32 -92.71 -0.77 15.10 16 29 H 0.11 3.11 6.79 -2.39 -0.02 3.09 16 30 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 31 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.10 3.06 8.11 -2.39 -0.02 3.04 16 Total: -1.00 -72.57 271.63 3.96 -68.61 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.23 Total: 15.41 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.16 Total: -34.20 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -2.09 Total: -30.31 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.76 Total: -4.81 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.59 Total: 45.23 kcal Total: -72.57 3.96 -68.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.403 kcal (2) G-P(sol) polarization free energy of solvation -72.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds