Wall clock time and date at job start Mon Mar 30 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36052 * 117.00000 * 2 1 4 4 C 1.38761 * 120.07639 * 270.02387 * 3 2 1 5 5 F 1.35101 * 120.02221 * 0.02562 * 4 3 2 6 6 C 1.38413 * 119.95445 * 179.97438 * 4 3 2 7 7 C 1.38264 * 120.12541 * 359.74973 * 6 4 3 8 8 C 1.38215 * 120.15542 * 0.50548 * 7 6 4 9 9 C 1.50698 * 119.98071 * 179.77253 * 8 7 6 10 10 C 1.50696 * 115.55456 * 120.62569 * 9 8 7 11 11 H 1.08000 * 120.00732 * 115.04048 * 10 9 8 12 12 C 1.37885 * 119.99685 * 295.03854 * 10 9 8 13 13 N 1.31517 * 119.99854 * 171.86687 * 12 10 9 14 14 Si 1.86796 * 119.99783 * 351.86625 * 12 10 9 15 15 H 1.48504 * 109.47138 * 85.23795 * 14 12 10 16 16 H 1.48508 * 109.46851 * 205.22736 * 14 12 10 17 17 H 1.48497 * 109.47573 * 325.23094 * 14 12 10 18 18 C 1.53005 * 117.49566 * 266.29340 * 9 8 7 19 19 C 1.53008 * 117.49742 * 334.95116 * 9 8 7 20 20 C 1.38629 * 120.04046 * 359.49421 * 8 7 6 21 21 O 1.35994 * 120.06177 * 180.27842 * 20 8 7 22 22 H 1.08996 * 109.47193 * 59.99386 * 1 2 3 23 23 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99545 * 1 2 3 25 25 H 1.08006 * 119.93532 * 179.97438 * 6 4 3 26 26 H 1.07999 * 119.92419 * 180.28165 * 7 6 4 27 27 H 0.97001 * 119.99804 * 180.02562 * 13 12 10 28 28 H 1.09001 * 117.49873 * 215.00133 * 18 9 8 29 29 H 1.08996 * 117.50144 * 0.02562 * 18 9 8 30 30 H 1.08996 * 117.49729 * 359.97438 * 19 9 8 31 31 H 1.08999 * 117.49565 * 144.97526 * 19 9 8 32 32 H 0.96695 * 114.00543 * 92.22459 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3619 1.8321 -1.2008 5 9 2.0553 1.2324 -2.3719 6 6 2.9898 3.0656 -1.1978 7 6 3.2990 3.6840 -0.0005 8 6 2.9920 3.0686 1.1984 9 6 3.3354 3.7439 2.5011 10 6 2.1700 4.0265 3.4138 11 1 2.1014 3.5314 4.3712 12 6 1.1914 4.9173 3.0266 13 7 0.0973 5.0453 3.7451 14 14 1.4196 5.9421 1.4817 15 1 0.9709 5.1627 0.2999 16 1 0.6147 7.1855 1.5891 17 1 2.8543 6.2929 1.3277 18 6 4.6719 3.3833 3.1529 19 6 4.4866 4.7518 2.4924 20 6 2.3631 1.8332 1.2033 21 8 2.0557 1.2299 2.3827 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.2355 3.5476 -2.1327 26 1 3.7849 4.6485 -0.0020 27 1 -0.5914 5.6717 3.4725 28 1 4.7082 3.3505 4.2418 29 1 5.3029 2.6580 2.6392 30 1 4.9957 4.9261 1.5446 31 1 4.4007 5.6194 3.1465 32 1 1.1667 1.4293 2.7066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259996798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:48 Heat of formation + Delta-G solvation = -68.013380 kcal Electronic energy + Delta-G solvation = -19138.151911 eV Core-core repulsion = 15980.169080 eV Total energy + Delta-G solvation = -3157.982831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.58404 -39.92025 -37.79988 -36.09263 -35.59648 -32.27903 -29.58562 -29.16783 -26.60695 -25.95462 -22.64732 -22.58721 -21.25039 -19.44183 -18.21101 -17.33775 -16.74045 -16.50165 -16.03223 -15.46035 -14.90510 -14.68036 -14.51700 -14.15441 -13.90699 -13.34658 -13.13288 -12.83177 -12.18477 -12.08754 -11.65950 -11.41281 -11.12016 -10.84564 -10.55194 -10.45939 -10.37350 -9.83604 -9.49697 -9.32731 -8.95016 -8.55222 -8.28227 -7.84244 -6.27062 -4.28283 1.34980 1.50080 3.21225 3.30962 3.33090 3.59221 4.04050 4.31086 4.34279 4.75125 4.93398 5.10243 5.25997 5.36605 5.44571 5.49823 5.53539 5.66497 5.87362 5.99722 6.15718 6.19884 6.27267 6.42640 6.48713 6.65361 6.77708 6.88413 7.07646 7.18536 7.57626 7.59791 8.32892 8.37005 8.78261 9.36185 10.82955 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.009829 C = 0.009517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.584631 B = 2848.124537 C = 2941.246232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.023 3.977 4 C 0.071 3.929 5 F -0.140 7.140 6 C -0.155 4.155 7 C -0.099 4.099 8 C -0.042 4.042 9 C 0.034 3.966 10 C -0.478 4.478 11 H 0.083 0.917 12 C 0.081 3.919 13 N -0.891 5.891 14 Si 0.858 3.142 15 H -0.271 1.271 16 H -0.292 1.292 17 H -0.250 1.250 18 C -0.163 4.163 19 C -0.195 4.195 20 C 0.146 3.854 21 O -0.470 6.470 22 H 0.043 0.957 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.266 0.734 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -4.068 -7.875 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C -0.022 4.022 4 C 0.051 3.949 5 F -0.118 7.118 6 C -0.174 4.174 7 C -0.117 4.117 8 C -0.043 4.043 9 C 0.033 3.967 10 C -0.515 4.515 11 H 0.101 0.899 12 C -0.122 4.122 13 N -0.527 5.527 14 Si 0.684 3.316 15 H -0.196 1.196 16 H -0.219 1.219 17 H -0.173 1.173 18 C -0.200 4.200 19 C -0.233 4.233 20 C 0.099 3.901 21 O -0.281 6.281 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.041 -4.406 -7.919 9.558 hybrid contribution -0.828 0.935 -1.051 1.632 sum 2.213 -3.471 -8.969 9.869 Atomic orbital electron populations 1.22998 0.79465 1.03024 1.00736 1.86118 1.19645 1.23759 1.94260 1.19030 1.02764 0.89141 0.91240 1.17758 1.03752 0.92993 0.80348 1.91437 1.91460 1.83405 1.45546 1.20944 1.02547 0.94236 0.99655 1.20963 0.99704 1.00277 0.90797 1.20204 0.96491 0.91883 0.95744 1.18003 0.89961 0.97581 0.91151 1.20240 1.03413 1.24997 1.02877 0.89910 1.24955 0.94400 0.96363 0.96508 1.69898 1.07093 1.36158 1.39526 0.87121 0.79852 0.80420 0.84161 1.19621 1.21880 1.17338 1.22763 1.00177 0.97561 0.99467 1.23170 1.05361 0.93657 1.01075 1.18176 0.97398 0.89904 0.84583 1.84715 1.38450 1.70420 1.34547 0.93847 0.88814 0.93254 0.84766 0.84724 0.92369 0.89310 0.90804 0.91012 0.89180 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.13 101.05 1.13 1.59 16 2 O -0.32 -5.88 10.07 -34.45 -0.35 -6.23 16 3 C 0.02 0.45 5.74 -39.09 -0.22 0.23 16 4 C 0.07 1.31 7.31 -39.32 -0.29 1.02 16 5 F -0.14 -2.47 17.11 2.25 0.04 -2.43 16 6 C -0.15 -2.66 10.02 -39.51 -0.40 -3.06 16 7 C -0.10 -1.87 7.12 -39.58 -0.28 -2.15 16 8 C -0.04 -0.88 4.09 -104.49 -0.43 -1.31 16 9 C 0.03 0.75 0.75 -156.81 -0.12 0.63 16 10 C -0.48 -12.26 8.51 -34.44 -0.29 -12.55 16 11 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 12 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 13 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 14 Si 0.86 20.07 24.35 -169.99 -4.14 15.93 16 15 H -0.27 -6.29 6.93 56.52 0.39 -5.90 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.25 -5.42 5.69 56.52 0.32 -5.10 16 18 C -0.16 -3.23 9.94 -26.69 -0.27 -3.50 16 19 C -0.20 -3.89 7.57 -26.69 -0.20 -4.09 16 20 C 0.15 3.01 6.60 -39.13 -0.26 2.75 16 21 O -0.47 -9.61 12.10 -34.27 -0.41 -10.02 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 26 H 0.14 2.35 6.06 -52.49 -0.32 2.03 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.28 6.80 -51.93 -0.35 0.93 16 31 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 32 H 0.39 7.33 9.02 45.56 0.41 7.74 16 LS Contribution 276.73 15.07 4.17 4.17 Total: -1.00 -28.78 276.73 -4.51 -33.30 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -2.87 Total: 8.05 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.73 Total: -18.37 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.77 Total: -24.40 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.76 Total: -16.25 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.14 Total: 15.93 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.78 -4.51 -33.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.718 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds