Wall clock time and date at job start Mon Mar 30 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36052 * 117.00000 * 2 1 4 4 C 1.38761 * 120.07639 * 270.02387 * 3 2 1 5 5 F 1.35101 * 120.02221 * 0.02562 * 4 3 2 6 6 C 1.38413 * 119.95445 * 179.97438 * 4 3 2 7 7 C 1.38264 * 120.12541 * 359.74973 * 6 4 3 8 8 C 1.38215 * 120.15542 * 0.50548 * 7 6 4 9 9 C 1.50698 * 119.98071 * 179.77253 * 8 7 6 10 10 C 1.50696 * 115.55456 * 120.62569 * 9 8 7 11 11 H 1.08000 * 120.00732 * 115.04048 * 10 9 8 12 12 C 1.37885 * 119.99685 * 295.03854 * 10 9 8 13 13 N 1.31517 * 119.99854 * 171.86687 * 12 10 9 14 14 Si 1.86796 * 119.99783 * 351.86625 * 12 10 9 15 15 H 1.48504 * 109.47138 * 85.23795 * 14 12 10 16 16 H 1.48508 * 109.46851 * 205.22736 * 14 12 10 17 17 H 1.48497 * 109.47573 * 325.23094 * 14 12 10 18 18 C 1.53005 * 117.49566 * 266.29340 * 9 8 7 19 19 C 1.53008 * 117.49742 * 334.95116 * 9 8 7 20 20 C 1.38629 * 120.04046 * 359.49421 * 8 7 6 21 21 O 1.35994 * 120.06177 * 180.27842 * 20 8 7 22 22 H 1.08996 * 109.47193 * 59.99386 * 1 2 3 23 23 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46917 * 299.99545 * 1 2 3 25 25 H 1.08006 * 119.93532 * 179.97438 * 6 4 3 26 26 H 1.07999 * 119.92419 * 180.28165 * 7 6 4 27 27 H 0.97001 * 119.99804 * 180.02562 * 13 12 10 28 28 H 1.09001 * 117.49873 * 215.00133 * 18 9 8 29 29 H 1.08996 * 117.50144 * 0.02562 * 18 9 8 30 30 H 1.08996 * 117.49729 * 359.97438 * 19 9 8 31 31 H 1.08999 * 117.49565 * 144.97526 * 19 9 8 32 32 H 0.96695 * 114.00543 * 92.22459 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3619 1.8321 -1.2008 5 9 2.0553 1.2324 -2.3719 6 6 2.9898 3.0656 -1.1978 7 6 3.2990 3.6840 -0.0005 8 6 2.9920 3.0686 1.1984 9 6 3.3354 3.7439 2.5011 10 6 2.1700 4.0265 3.4138 11 1 2.1014 3.5314 4.3712 12 6 1.1914 4.9173 3.0266 13 7 0.0973 5.0453 3.7451 14 14 1.4196 5.9421 1.4817 15 1 0.9709 5.1627 0.2999 16 1 0.6147 7.1855 1.5891 17 1 2.8543 6.2929 1.3277 18 6 4.6719 3.3833 3.1529 19 6 4.4866 4.7518 2.4924 20 6 2.3631 1.8332 1.2033 21 8 2.0557 1.2299 2.3827 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.2355 3.5476 -2.1327 26 1 3.7849 4.6485 -0.0020 27 1 -0.5914 5.6717 3.4725 28 1 4.7082 3.3505 4.2418 29 1 5.3029 2.6580 2.6392 30 1 4.9957 4.9261 1.5446 31 1 4.4007 5.6194 3.1465 32 1 1.1667 1.4293 2.7066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259996798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:48 Heat of formation + Delta-G solvation = -86.915436 kcal Electronic energy + Delta-G solvation = -19138.971566 eV Core-core repulsion = 15980.169080 eV Total energy + Delta-G solvation = -3158.802485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.96986 -41.38781 -39.25936 -37.65051 -37.10343 -34.27429 -30.99079 -30.63346 -27.92976 -27.79993 -24.18497 -24.05414 -22.79575 -21.09317 -19.74542 -18.96821 -18.22044 -18.05631 -17.47739 -16.89137 -16.66837 -16.14327 -15.96549 -15.49625 -15.37636 -14.91579 -14.72168 -14.58866 -13.75814 -13.40886 -13.23964 -12.92903 -12.74484 -12.49810 -12.10153 -12.04359 -11.94143 -11.62708 -11.07108 -10.90779 -10.78181 -10.36989 -9.71611 -9.35782 -8.29591 -6.33928 -0.08382 0.05095 1.37897 1.41509 1.51190 2.19756 2.39628 2.64944 2.90603 2.96183 3.35785 3.51278 3.82902 3.90870 4.14259 4.30706 4.35192 4.37315 4.39962 4.58600 4.64356 4.72497 4.82011 4.90458 5.02440 5.11759 5.28320 5.40836 5.51704 5.67449 5.67528 6.21688 6.34420 6.71809 6.81419 7.33226 8.83675 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.021182 B = 0.009829 C = 0.009517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.584631 B = 2848.124537 C = 2941.246232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.019 3.981 4 C 0.066 3.934 5 F -0.135 7.135 6 C -0.138 4.138 7 C -0.104 4.104 8 C -0.058 4.058 9 C 0.012 3.988 10 C -0.470 4.470 11 H 0.038 0.962 12 C 0.032 3.968 13 N -0.940 5.940 14 Si 0.909 3.091 15 H -0.264 1.264 16 H -0.304 1.304 17 H -0.217 1.217 18 C -0.159 4.159 19 C -0.180 4.180 20 C 0.120 3.880 21 O -0.482 6.482 22 H 0.049 0.951 23 H 0.124 0.876 24 H 0.045 0.955 25 H 0.174 0.826 26 H 0.156 0.844 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.005 -3.575 -10.579 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.026 4.026 4 C 0.046 3.954 5 F -0.114 7.114 6 C -0.157 4.157 7 C -0.121 4.121 8 C -0.059 4.059 9 C 0.011 3.989 10 C -0.507 4.507 11 H 0.056 0.944 12 C -0.167 4.167 13 N -0.579 5.579 14 Si 0.733 3.267 15 H -0.189 1.189 16 H -0.231 1.231 17 H -0.139 1.139 18 C -0.196 4.196 19 C -0.217 4.217 20 C 0.074 3.926 21 O -0.293 6.293 22 H 0.068 0.932 23 H 0.142 0.858 24 H 0.064 0.936 25 H 0.192 0.808 26 H 0.173 0.827 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 4.463 -3.929 -10.629 12.180 hybrid contribution -1.278 0.646 -0.164 1.442 sum 3.185 -3.283 -10.793 11.722 Atomic orbital electron populations 1.23246 0.77477 1.05158 1.00824 1.86073 1.21574 1.23516 1.94321 1.19149 1.02767 0.89325 0.91372 1.17897 1.03869 0.93531 0.80084 1.91451 1.91432 1.83438 1.45073 1.21314 1.00341 0.93256 1.00758 1.21193 0.99718 1.00927 0.90301 1.20148 0.97637 0.92213 0.95882 1.17864 0.89313 0.99970 0.91786 1.20257 1.04741 1.23863 1.01886 0.94360 1.25661 0.93965 0.97569 0.99506 1.70039 1.08360 1.37574 1.41896 0.86310 0.81384 0.78263 0.80712 1.18922 1.23111 1.13929 1.22795 0.99114 0.98382 0.99272 1.23218 1.03247 0.92997 1.02223 1.18404 0.98684 0.90674 0.84795 1.84693 1.38673 1.70728 1.35202 0.93244 0.85776 0.93646 0.80811 0.82698 0.92640 0.90112 0.89102 0.87860 0.89788 0.74716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.13 113.37 1.26 1.99 16 2 O -0.34 -11.98 10.07 -80.23 -0.81 -12.79 16 3 C 0.02 0.71 5.74 22.59 0.13 0.84 16 4 C 0.07 2.23 7.31 22.44 0.16 2.39 16 5 F -0.14 -4.36 17.11 44.97 0.77 -3.59 16 6 C -0.14 -4.13 10.02 22.32 0.22 -3.91 16 7 C -0.10 -3.46 7.12 22.27 0.16 -3.30 16 8 C -0.06 -2.29 4.09 -19.78 -0.08 -2.38 16 9 C 0.01 0.49 0.75 -53.67 -0.04 0.45 16 10 C -0.47 -24.62 8.51 25.60 0.22 -24.40 16 11 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 12 C 0.03 1.70 5.46 84.66 0.46 2.17 16 13 N -0.94 -54.94 13.96 21.45 0.30 -54.64 16 14 Si 0.91 40.31 24.35 68.60 1.67 41.98 16 15 H -0.26 -11.37 6.93 99.48 0.69 -10.68 16 16 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 17 H -0.22 -8.37 5.69 99.48 0.57 -7.81 16 18 C -0.16 -6.07 9.94 30.62 0.30 -5.77 16 19 C -0.18 -6.61 7.57 30.62 0.23 -6.38 16 20 C 0.12 4.89 6.60 22.56 0.15 5.04 16 21 O -0.48 -20.17 12.10 -79.58 -0.96 -21.13 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 26 H 0.16 4.51 6.06 -2.91 -0.02 4.49 16 27 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.10 3.16 6.80 -2.39 -0.02 3.15 16 31 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.39 15.55 9.02 -74.06 -0.67 14.89 16 Total: -1.00 -62.61 276.73 4.48 -58.13 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.33 Total: 25.29 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.18 Total: -33.25 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.30 Total: -54.64 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.77 Total: -33.93 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.77 Total: -3.59 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.67 Total: 41.98 kcal Total: -62.61 4.48 -58.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259996798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.784 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds