Wall clock time and date at job start Mon Mar 30 2020 06:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47115 * 2 1 4 4 C 1.50704 * 109.46888 * 119.99750 * 2 1 3 5 5 H 1.07998 * 119.99892 * 114.49374 * 4 2 1 6 6 C 1.37872 * 120.00001 * 294.49216 * 4 2 1 7 7 N 1.31520 * 120.00003 * 164.72222 * 6 4 2 8 8 Si 1.86801 * 120.00158 * 344.72132 * 6 4 2 9 9 H 1.48496 * 109.47292 * 269.99857 * 8 6 4 10 10 H 1.48498 * 109.46993 * 30.00225 * 8 6 4 11 11 H 1.48503 * 109.47163 * 149.99780 * 8 6 4 12 12 C 1.50699 * 109.47068 * 239.99409 * 2 1 3 13 13 C 1.38438 * 119.96178 * 300.00146 * 12 2 1 14 14 F 1.35107 * 119.97926 * 0.03852 * 13 12 2 15 15 C 1.38426 * 120.03925 * 180.02562 * 13 12 2 16 16 C 1.38138 * 120.00339 * 0.06910 * 15 13 12 17 17 C 1.38779 * 120.02208 * 359.97438 * 16 15 13 18 18 C 1.38223 * 119.95082 * 119.72626 * 12 2 1 19 19 C 1.50785 * 119.64445 * 0.25748 * 18 12 2 20 20 O 1.43074 * 109.37162 * 163.66345 * 19 18 12 21 21 C 1.43260 * 113.03392 * 48.38220 * 20 19 18 22 22 O 1.36032 * 119.55932 * 179.77038 * 17 16 15 23 23 H 1.08997 * 109.46872 * 53.93929 * 1 2 3 24 24 H 1.09002 * 109.47129 * 173.93985 * 1 2 3 25 25 H 1.09001 * 109.47135 * 293.94060 * 1 2 3 26 26 H 0.96997 * 119.99646 * 354.90189 * 7 6 4 27 27 H 1.08003 * 119.99798 * 180.02562 * 15 13 12 28 28 H 1.07997 * 119.99075 * 179.97438 * 16 15 13 29 29 H 1.09001 * 109.65870 * 43.56946 * 19 18 12 30 30 H 1.08999 * 109.29557 * 283.53005 * 19 18 12 31 31 H 1.09003 * 109.61337 * 174.80609 * 21 20 19 32 32 H 1.08999 * 109.76082 * 54.36557 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5779 -1.6374 1.1340 6 6 1.7954 -0.1768 2.4796 7 7 1.9568 -0.9191 3.5532 8 14 1.2452 1.6005 2.6470 9 1 2.4368 2.4779 2.7714 10 1 0.4651 1.9924 1.4457 11 1 0.3963 1.7440 3.8569 12 6 2.0324 -0.7105 -1.2304 13 6 1.6974 -2.0359 -1.4485 14 9 0.9199 -2.6911 -0.5588 15 6 2.1584 -2.6903 -2.5779 16 6 2.9543 -2.0213 -3.4874 17 6 3.2916 -0.6928 -3.2695 18 6 2.8223 -0.0363 -2.1425 19 6 3.1807 1.4073 -1.8951 20 8 4.2809 1.7735 -2.7333 21 6 4.0983 1.3844 -4.0999 22 8 4.0798 -0.0445 -4.1689 23 1 -0.3633 0.6049 -0.8307 24 1 -0.3633 -1.0219 -0.1085 25 1 -0.3633 0.4170 0.9393 26 1 2.1703 -1.8611 3.4639 27 1 1.8963 -3.7242 -2.7477 28 1 3.3142 -2.5321 -4.3682 29 1 3.4589 1.5422 -0.8499 30 1 2.3215 2.0366 -2.1271 31 1 4.9208 1.7691 -4.7029 32 1 3.1542 1.7813 -4.4730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260044200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:43 Heat of formation + Delta-G solvation = -107.287682 kcal Electronic energy + Delta-G solvation = -19064.578318 eV Core-core repulsion = 15904.892426 eV Total energy + Delta-G solvation = -3159.685892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.07309 -40.72014 -37.70749 -36.44050 -34.43409 -31.99468 -30.74321 -28.82869 -26.32952 -25.60754 -24.80199 -22.85885 -20.85918 -19.94917 -18.16822 -17.42197 -17.04728 -17.00089 -15.84814 -15.23520 -14.92819 -14.61562 -14.26393 -14.07108 -13.72612 -13.38276 -13.12885 -12.78702 -12.70858 -12.07216 -11.88157 -11.71445 -11.32045 -11.20258 -10.63892 -10.56287 -10.43653 -10.16750 -9.73252 -9.59028 -8.96192 -8.42840 -8.27528 -7.68848 -6.46437 -4.10693 1.44069 1.65259 3.25528 3.36988 3.38188 3.53085 3.66012 3.92709 4.46273 4.65040 4.80133 4.94133 5.02599 5.17293 5.21545 5.38452 5.46027 5.60181 5.80172 5.93277 6.11169 6.25372 6.38237 6.43285 6.51632 6.62362 6.67843 6.83372 7.01392 7.12385 7.36575 7.52237 7.96723 8.36234 8.85504 9.57097 10.91027 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.009182 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.112929 B = 3048.580197 C = 3871.274571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 H 0.036 0.964 4 C -0.589 4.589 5 H 0.059 0.941 6 C 0.035 3.965 7 N -0.903 5.903 8 Si 1.038 2.962 9 H -0.285 1.285 10 H -0.270 1.270 11 H -0.285 1.285 12 C -0.019 4.019 13 C 0.081 3.919 14 F -0.125 7.125 15 C -0.125 4.125 16 C -0.141 4.141 17 C 0.116 3.884 18 C -0.186 4.186 19 C 0.103 3.897 20 O -0.387 6.387 21 C 0.222 3.778 22 O -0.334 6.334 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.270 0.730 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 3.336 -14.922 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.025 3.975 3 H 0.054 0.946 4 C -0.626 4.626 5 H 0.077 0.923 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.865 3.135 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.211 1.211 12 C -0.020 4.020 13 C 0.061 3.939 14 F -0.104 7.104 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.071 3.929 18 C -0.188 4.188 19 C 0.028 3.972 20 O -0.306 6.306 21 C 0.109 3.891 22 O -0.251 6.251 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.285 4.508 -13.836 14.555 hybrid contribution 0.023 -1.442 -0.922 1.712 sum 0.308 3.066 -14.758 15.077 Atomic orbital electron populations 1.22247 0.97589 1.00889 0.99575 1.18314 0.92774 0.95691 0.90708 0.94646 1.21843 1.40074 1.10636 0.90072 0.92317 1.25719 0.94215 1.05275 0.91845 1.70783 1.43798 1.08390 1.30688 0.84199 0.77314 0.75740 0.76206 1.21136 1.19541 1.21053 1.20071 0.93941 0.92520 0.95445 1.17345 0.96541 0.90852 0.89126 1.91496 1.71809 1.80280 1.66785 1.20903 0.99345 1.00403 0.93770 1.20084 1.02144 0.92385 1.01338 1.18420 0.93001 0.92499 0.88932 1.19972 1.04472 0.98354 0.95965 1.21671 0.89013 0.90084 0.96428 1.88282 1.43575 1.79087 1.19680 1.24344 1.02396 0.77640 0.84767 1.86195 1.63368 1.21806 1.53695 0.95853 0.92708 0.92615 0.92018 0.84688 0.84873 0.85616 0.91135 0.84582 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.35 37.16 0.31 -2.85 16 2 C 0.04 1.02 1.73 -92.92 -0.16 0.86 16 3 H 0.04 0.78 4.38 -51.93 -0.23 0.56 16 4 C -0.59 -16.22 7.94 -34.44 -0.27 -16.49 16 5 H 0.06 1.79 7.65 -52.49 -0.40 1.39 16 6 C 0.03 0.98 5.33 -17.82 -0.09 0.89 16 7 N -0.90 -27.55 13.70 55.43 0.76 -26.79 16 8 Si 1.04 24.28 26.17 -169.99 -4.45 19.83 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.27 -5.67 5.53 56.52 0.31 -5.35 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C -0.02 -0.39 4.75 -104.55 -0.50 -0.89 16 13 C 0.08 1.66 6.61 -39.44 -0.26 1.40 16 14 F -0.13 -2.81 14.26 2.25 0.03 -2.78 16 15 C -0.13 -2.10 10.02 -39.55 -0.40 -2.50 16 16 C -0.14 -2.23 9.97 -39.42 -0.39 -2.62 16 17 C 0.12 2.00 6.56 -39.24 -0.26 1.74 16 18 C -0.19 -3.49 5.82 -104.44 -0.61 -4.10 16 19 C 0.10 1.73 5.76 36.05 0.21 1.94 16 20 O -0.39 -6.06 10.97 -59.11 -0.65 -6.71 16 21 C 0.22 2.76 7.94 101.05 0.80 3.56 16 22 O -0.33 -5.15 10.48 -43.72 -0.46 -5.61 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 1.21 6.15 -51.93 -0.32 0.89 16 25 H 0.05 1.23 5.06 -51.93 -0.26 0.97 16 26 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16 27 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.13 2.24 6.90 -51.93 -0.36 1.88 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.14 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 263.62 15.07 3.97 3.97 Total: -1.00 -31.20 263.62 -5.76 -36.95 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.35 Total: 0.21 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -1.62 Total: -19.07 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.76 Total: -26.79 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.11 Total: -12.32 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.03 Total: -2.78 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.45 Total: 19.83 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.20 -5.76 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.334 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds