Wall clock time and date at job start Mon Mar 30 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47115 * 2 1 4 4 C 1.50704 * 109.46888 * 119.99750 * 2 1 3 5 5 H 1.07998 * 119.99892 * 114.49374 * 4 2 1 6 6 C 1.37872 * 120.00001 * 294.49216 * 4 2 1 7 7 N 1.31520 * 120.00003 * 164.72222 * 6 4 2 8 8 Si 1.86801 * 120.00158 * 344.72132 * 6 4 2 9 9 H 1.48496 * 109.47292 * 269.99857 * 8 6 4 10 10 H 1.48498 * 109.46993 * 30.00225 * 8 6 4 11 11 H 1.48503 * 109.47163 * 149.99780 * 8 6 4 12 12 C 1.50699 * 109.47068 * 239.99409 * 2 1 3 13 13 C 1.38438 * 119.96178 * 300.00146 * 12 2 1 14 14 F 1.35107 * 119.97926 * 0.03852 * 13 12 2 15 15 C 1.38426 * 120.03925 * 180.02562 * 13 12 2 16 16 C 1.38138 * 120.00339 * 0.06910 * 15 13 12 17 17 C 1.38779 * 120.02208 * 359.97438 * 16 15 13 18 18 C 1.38223 * 119.95082 * 119.72626 * 12 2 1 19 19 C 1.50785 * 119.64445 * 0.25748 * 18 12 2 20 20 O 1.43074 * 109.37162 * 163.66345 * 19 18 12 21 21 C 1.43260 * 113.03392 * 48.38220 * 20 19 18 22 22 O 1.36032 * 119.55932 * 179.77038 * 17 16 15 23 23 H 1.08997 * 109.46872 * 53.93929 * 1 2 3 24 24 H 1.09002 * 109.47129 * 173.93985 * 1 2 3 25 25 H 1.09001 * 109.47135 * 293.94060 * 1 2 3 26 26 H 0.96997 * 119.99646 * 354.90189 * 7 6 4 27 27 H 1.08003 * 119.99798 * 180.02562 * 15 13 12 28 28 H 1.07997 * 119.99075 * 179.97438 * 16 15 13 29 29 H 1.09001 * 109.65870 * 43.56946 * 19 18 12 30 30 H 1.08999 * 109.29557 * 283.53005 * 19 18 12 31 31 H 1.09003 * 109.61337 * 174.80609 * 21 20 19 32 32 H 1.08999 * 109.76082 * 54.36557 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5779 -1.6374 1.1340 6 6 1.7954 -0.1768 2.4796 7 7 1.9568 -0.9191 3.5532 8 14 1.2452 1.6005 2.6470 9 1 2.4368 2.4779 2.7714 10 1 0.4651 1.9924 1.4457 11 1 0.3963 1.7440 3.8569 12 6 2.0324 -0.7105 -1.2304 13 6 1.6974 -2.0359 -1.4485 14 9 0.9199 -2.6911 -0.5588 15 6 2.1584 -2.6903 -2.5779 16 6 2.9543 -2.0213 -3.4874 17 6 3.2916 -0.6928 -3.2695 18 6 2.8223 -0.0363 -2.1425 19 6 3.1807 1.4073 -1.8951 20 8 4.2809 1.7735 -2.7333 21 6 4.0983 1.3844 -4.0999 22 8 4.0798 -0.0445 -4.1689 23 1 -0.3633 0.6049 -0.8307 24 1 -0.3633 -1.0219 -0.1085 25 1 -0.3633 0.4170 0.9393 26 1 2.1703 -1.8611 3.4639 27 1 1.8963 -3.7242 -2.7477 28 1 3.3142 -2.5321 -4.3682 29 1 3.4589 1.5422 -0.8499 30 1 2.3215 2.0366 -2.1271 31 1 4.9208 1.7691 -4.7029 32 1 3.1542 1.7813 -4.4730 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260044200.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:42 Heat of formation + Delta-G solvation = -127.969732 kcal Electronic energy + Delta-G solvation = -19065.475159 eV Core-core repulsion = 15904.892426 eV Total energy + Delta-G solvation = -3160.582733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.69595 -41.96543 -39.05931 -37.68805 -36.15186 -33.87772 -32.20923 -30.29479 -27.55100 -26.85634 -26.71735 -24.46802 -22.16919 -21.57368 -19.89896 -18.94517 -18.50024 -18.34867 -17.15131 -16.58816 -16.39187 -16.06048 -15.89024 -15.38789 -15.12784 -15.07606 -14.50949 -14.38212 -14.22418 -13.86817 -13.44965 -13.13798 -13.00062 -12.64398 -12.37576 -12.15157 -11.88151 -11.52780 -11.40079 -11.16653 -10.96123 -10.49657 -9.79777 -9.11271 -8.69636 -6.35957 0.07152 0.23242 1.48025 1.53984 1.70314 2.09500 2.46284 2.51879 2.67001 3.07611 3.32026 3.58547 3.63864 3.88698 4.02961 4.19623 4.30603 4.32345 4.43616 4.56050 4.65247 4.71149 4.83910 4.93471 5.01637 5.11299 5.20106 5.31581 5.51379 5.63153 5.76803 5.97246 6.04963 6.26685 6.54235 7.40952 8.63754 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.009182 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.112929 B = 3048.580197 C = 3871.274571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 H 0.052 0.948 4 C -0.582 4.582 5 H 0.009 0.991 6 C -0.021 4.021 7 N -0.941 5.941 8 Si 1.078 2.922 9 H -0.270 1.270 10 H -0.228 1.228 11 H -0.289 1.289 12 C -0.048 4.048 13 C 0.043 3.957 14 F -0.149 7.149 15 C -0.116 4.116 16 C -0.129 4.129 17 C 0.115 3.885 18 C -0.195 4.195 19 C 0.103 3.897 20 O -0.399 6.399 21 C 0.209 3.791 22 O -0.335 6.335 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.049 0.951 26 H 0.249 0.751 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.175 0.825 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 5.211 -18.074 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.070 0.930 4 C -0.620 4.620 5 H 0.028 0.972 6 C -0.218 4.218 7 N -0.577 5.577 8 Si 0.897 3.103 9 H -0.195 1.195 10 H -0.151 1.151 11 H -0.216 1.216 12 C -0.049 4.049 13 C 0.024 3.976 14 F -0.127 7.127 15 C -0.134 4.134 16 C -0.147 4.147 17 C 0.070 3.930 18 C -0.196 4.196 19 C 0.027 3.973 20 O -0.318 6.318 21 C 0.097 3.903 22 O -0.252 6.252 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.192 0.808 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.350 6.379 -17.033 18.192 hybrid contribution 0.125 -2.107 -0.117 2.114 sum 0.476 4.272 -17.150 17.680 Atomic orbital electron populations 1.22163 0.96489 1.00832 1.00596 1.18223 0.93636 0.96042 0.89693 0.93012 1.21964 1.38615 1.08812 0.92591 0.97210 1.27283 0.93879 1.09081 0.91577 1.70934 1.47195 1.07546 1.31984 0.83763 0.78004 0.70804 0.77701 1.19538 1.15091 1.21564 1.19965 0.96078 0.93122 0.95773 1.17814 0.97991 0.91378 0.90402 1.91429 1.72690 1.80711 1.67916 1.21211 0.98350 1.01607 0.92251 1.20529 1.00482 0.91956 1.01759 1.18624 0.92483 0.93136 0.88758 1.20176 1.03890 0.99471 0.96073 1.21624 0.90187 0.89405 0.96045 1.88264 1.43358 1.79044 1.21174 1.25026 1.05548 0.76107 0.83610 1.86202 1.62618 1.23505 1.52856 0.92391 0.94056 0.93229 0.94177 0.81835 0.81212 0.87412 0.88576 0.80797 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 8.35 71.98 0.60 -5.48 16 2 C 0.04 1.97 1.73 -12.28 -0.02 1.95 16 3 H 0.05 2.20 4.38 -2.39 -0.01 2.19 16 4 C -0.58 -33.30 7.94 25.60 0.20 -33.10 16 5 H 0.01 0.62 7.65 -2.91 -0.02 0.60 16 6 C -0.02 -1.23 5.33 84.65 0.45 -0.78 16 7 N -0.94 -60.15 13.70 21.45 0.29 -59.85 16 8 Si 1.08 48.51 26.17 68.60 1.80 50.31 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.23 -8.65 5.53 99.48 0.55 -8.10 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 C -0.05 -2.02 4.75 -19.82 -0.09 -2.12 16 13 C 0.04 1.79 6.61 22.36 0.15 1.93 16 14 F -0.15 -6.95 14.26 44.97 0.64 -6.31 16 15 C -0.12 -3.67 10.02 22.29 0.22 -3.45 16 16 C -0.13 -3.66 9.97 22.38 0.22 -3.43 16 17 C 0.11 3.63 6.56 22.49 0.15 3.78 16 18 C -0.19 -6.95 5.82 -19.75 -0.11 -7.07 16 19 C 0.10 3.20 5.76 71.26 0.41 3.61 16 20 O -0.40 -11.26 10.97 -126.14 -1.38 -12.65 16 21 C 0.21 4.30 7.94 113.37 0.90 5.20 16 22 O -0.34 -9.03 10.48 -71.08 -0.74 -9.77 16 23 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.83 6.15 -2.39 -0.01 1.81 16 25 H 0.05 2.12 5.06 -2.39 -0.01 2.10 16 26 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 27 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.11 3.71 6.90 -2.39 -0.02 3.69 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.18 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 Total: -1.00 -71.64 263.62 4.63 -67.00 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.95 Total: 10.21 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.08 Total: -38.94 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.29 Total: -59.85 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -2.13 Total: -22.42 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.64 Total: -6.31 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.80 Total: 50.31 kcal Total: -71.64 4.63 -67.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260044200.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.967 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds