Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99833 * 2 1 4 4 C 1.38828 * 120.01873 * 359.97438 * 3 2 1 5 5 C 1.38188 * 120.10508 * 179.75122 * 4 3 2 6 6 C 1.38136 * 120.13357 * 0.54612 * 5 4 3 7 7 C 1.50700 * 119.98408 * 179.73074 * 6 5 4 8 8 H 1.09004 * 109.47210 * 179.72563 * 7 6 5 9 9 C 1.53000 * 109.47313 * 59.72381 * 7 6 5 10 10 C 1.50702 * 109.46869 * 299.72269 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.38993 * 120.03114 * 359.45254 * 6 5 4 19 19 S 1.76191 * 120.05145 * 180.25116 * 18 6 5 20 20 C 1.81407 * 102.99910 * 180.02562 * 19 18 6 21 21 C 1.38552 * 120.01335 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47302 * 299.99910 * 1 2 3 23 23 H 1.09000 * 109.46985 * 60.00335 * 1 2 3 24 24 H 1.09010 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.94673 * 0.04503 * 4 3 2 26 26 H 1.08000 * 119.93432 * 180.29374 * 5 4 3 27 27 H 1.09004 * 109.47084 * 299.99675 * 9 7 6 28 28 H 1.08994 * 109.47175 * 60.00247 * 9 7 6 29 29 H 1.09001 * 109.47192 * 180.02562 * 9 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.46877 * 180.02562 * 20 19 18 32 32 H 1.09005 * 109.47053 * 300.00187 * 20 19 18 33 33 H 1.08994 * 109.47216 * 60.00182 * 20 19 18 34 34 H 1.08004 * 120.07080 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2901 2.3754 -0.0005 5 6 1.9156 3.6076 0.0047 6 6 3.2947 3.6853 -0.0010 7 6 3.9733 5.0309 -0.0014 8 1 5.0545 4.8926 -0.0013 9 6 3.5588 5.8115 1.2474 10 6 3.5653 5.7987 -1.2323 11 1 2.8825 5.3568 -1.9429 12 6 4.0587 7.0680 -1.4481 13 7 4.8898 7.6064 -0.5826 14 14 3.5469 8.0228 -2.9698 15 1 2.0733 8.2066 -2.9666 16 1 4.2118 9.3507 -2.9679 17 1 3.9492 7.2701 -4.1851 18 6 4.0569 2.5229 -0.0004 19 16 5.8161 2.6214 -0.0009 20 6 6.3223 0.8794 -0.0007 21 6 3.4295 1.2837 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.2116 2.3182 -0.0002 26 1 1.3249 4.5118 0.0090 27 1 2.4776 5.9499 1.2472 28 1 3.8539 5.2562 2.1376 29 1 4.0493 6.7849 1.2469 30 1 5.2372 8.4992 -0.7346 31 1 7.4106 0.8173 -0.0005 32 1 5.9304 0.3873 0.8895 33 1 5.9300 0.3869 -0.8904 34 1 4.0191 0.3788 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260048626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -22.407300 kcal Electronic energy + Delta-G solvation = -16355.694400 eV Core-core repulsion = 13765.902374 eV Total energy + Delta-G solvation = -2589.792027 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68067 -37.36441 -34.05916 -31.32012 -30.73276 -28.59043 -28.29947 -26.61235 -25.08203 -22.66046 -21.99749 -19.69916 -18.10047 -16.41207 -15.80231 -15.66203 -15.50941 -14.92854 -14.08288 -13.92044 -13.63405 -13.48273 -13.31583 -12.69397 -12.35680 -12.22678 -11.82006 -11.63380 -11.41732 -11.08682 -10.87681 -10.63004 -10.53757 -10.20405 -10.19693 -9.77551 -9.33119 -9.08798 -8.87698 -8.30635 -7.66012 -6.74041 -5.97069 -4.03723 1.73643 2.05208 2.06355 2.89801 3.33566 3.38008 3.41060 3.63466 4.26758 4.47835 5.11351 5.22477 5.28634 5.32723 5.33436 5.35486 5.42958 5.53619 5.77898 5.88697 5.98833 6.11561 6.38477 6.72914 6.84394 6.86931 7.02351 7.15470 7.24149 7.35652 7.73385 7.78742 7.98735 8.12160 8.41693 8.97522 9.59868 11.08175 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.007436 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.662830 B = 3764.735440 C = 4596.688075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.111 3.889 4 C -0.212 4.212 5 C -0.061 4.061 6 C -0.043 4.043 7 C 0.075 3.925 8 H 0.047 0.953 9 C -0.131 4.131 10 C -0.506 4.506 11 H 0.056 0.944 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.892 3.108 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.065 4.065 19 S -0.074 6.074 20 C -0.168 4.168 21 C -0.168 4.168 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.027 0.973 28 H 0.009 0.991 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -12.271 2.254 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.240 6.240 3 C 0.066 3.934 4 C -0.233 4.233 5 C -0.081 4.081 6 C -0.049 4.049 7 C 0.056 3.944 8 H 0.065 0.935 9 C -0.189 4.189 10 C -0.544 4.544 11 H 0.074 0.926 12 C -0.138 4.138 13 N -0.526 5.526 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.177 4.177 19 S 0.169 5.831 20 C -0.336 4.336 21 C -0.193 4.193 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.148 0.852 27 H 0.046 0.954 28 H 0.028 0.972 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.135 -11.393 2.286 12.035 hybrid contribution -1.469 -0.492 -0.896 1.790 sum -4.604 -11.885 1.390 12.821 Atomic orbital electron populations 1.22943 0.79139 1.03083 1.01274 1.85982 1.20788 1.27551 1.89649 1.18624 0.91670 0.83760 0.99375 1.21189 0.99276 0.92556 1.10308 1.20840 0.94276 0.96480 0.96473 1.20359 0.93119 0.95567 0.95812 1.17886 0.95537 0.85956 0.95013 0.93532 1.21787 0.99201 1.02741 0.95181 1.21038 1.27935 0.99680 1.05784 0.92584 1.24933 0.94954 0.97473 0.96411 1.69877 1.31504 1.15974 1.35245 0.86662 0.78688 0.79082 0.83613 1.20333 1.21264 1.20251 1.21467 0.96822 0.95052 1.04391 1.86043 0.98586 1.06278 1.92232 1.23787 1.05254 0.99683 1.04895 1.20164 0.91851 0.96555 1.10689 0.92929 0.92896 0.88906 0.86223 0.85172 0.95366 0.97151 0.89475 0.92888 0.88129 0.90487 0.90386 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.33 -5.01 10.49 -19.40 -0.20 -5.21 16 3 C 0.11 1.95 6.68 -39.25 -0.26 1.69 16 4 C -0.21 -3.69 9.04 -39.38 -0.36 -4.04 16 5 C -0.06 -1.22 8.70 -39.64 -0.35 -1.56 16 6 C -0.04 -0.97 4.76 -104.38 -0.50 -1.46 16 7 C 0.07 1.89 2.35 -92.92 -0.22 1.67 16 8 H 0.05 1.27 6.02 -51.86 -0.31 0.96 16 9 C -0.13 -3.20 8.78 37.16 0.33 -2.87 16 10 C -0.51 -13.83 8.25 -34.44 -0.28 -14.11 16 11 H 0.06 1.53 7.61 -52.49 -0.40 1.13 16 12 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 13 N -0.89 -25.18 11.31 55.43 0.63 -24.55 16 14 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.06 -1.32 6.11 -39.06 -0.24 -1.55 16 19 S -0.07 -1.40 20.48 -107.50 -2.20 -3.60 16 20 C -0.17 -2.24 9.15 101.05 0.92 -1.32 16 21 C -0.17 -3.06 9.30 -39.22 -0.36 -3.43 16 22 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 24 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.12 1.71 6.29 -52.49 -0.33 1.38 16 26 H 0.13 2.58 7.55 -52.49 -0.40 2.18 16 27 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 32 H 0.08 0.95 7.75 -51.92 -0.40 0.55 16 33 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 34 H 0.12 1.96 5.88 -52.48 -0.31 1.65 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -29.62 291.69 -7.27 -36.89 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.45 Total: -0.19 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -0.42 Total: -24.00 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.20 Total: -3.60 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.62 -7.27 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.481 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds