Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35893 * 116.99833 * 2 1 4 4 C 1.38828 * 120.01873 * 359.97438 * 3 2 1 5 5 C 1.38188 * 120.10508 * 179.75122 * 4 3 2 6 6 C 1.38136 * 120.13357 * 0.54612 * 5 4 3 7 7 C 1.50700 * 119.98408 * 179.73074 * 6 5 4 8 8 H 1.09004 * 109.47210 * 179.72563 * 7 6 5 9 9 C 1.53000 * 109.47313 * 59.72381 * 7 6 5 10 10 C 1.50702 * 109.46869 * 299.72269 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.38993 * 120.03114 * 359.45254 * 6 5 4 19 19 S 1.76191 * 120.05145 * 180.25116 * 18 6 5 20 20 C 1.81407 * 102.99910 * 180.02562 * 19 18 6 21 21 C 1.38552 * 120.01335 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.47302 * 299.99910 * 1 2 3 23 23 H 1.09000 * 109.46985 * 60.00335 * 1 2 3 24 24 H 1.09010 * 109.46897 * 179.97438 * 1 2 3 25 25 H 1.07999 * 119.94673 * 0.04503 * 4 3 2 26 26 H 1.08000 * 119.93432 * 180.29374 * 5 4 3 27 27 H 1.09004 * 109.47084 * 299.99675 * 9 7 6 28 28 H 1.08994 * 109.47175 * 60.00247 * 9 7 6 29 29 H 1.09001 * 109.47192 * 180.02562 * 9 7 6 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.46877 * 180.02562 * 20 19 18 32 32 H 1.09005 * 109.47053 * 300.00187 * 20 19 18 33 33 H 1.08994 * 109.47216 * 60.00182 * 20 19 18 34 34 H 1.08004 * 120.07080 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2901 2.3754 -0.0005 5 6 1.9156 3.6076 0.0047 6 6 3.2947 3.6853 -0.0010 7 6 3.9733 5.0309 -0.0014 8 1 5.0545 4.8926 -0.0013 9 6 3.5588 5.8115 1.2474 10 6 3.5653 5.7987 -1.2323 11 1 2.8825 5.3568 -1.9429 12 6 4.0587 7.0680 -1.4481 13 7 4.8898 7.6064 -0.5826 14 14 3.5469 8.0228 -2.9698 15 1 2.0733 8.2066 -2.9666 16 1 4.2118 9.3507 -2.9679 17 1 3.9492 7.2701 -4.1851 18 6 4.0569 2.5229 -0.0004 19 16 5.8161 2.6214 -0.0009 20 6 6.3223 0.8794 -0.0007 21 6 3.4295 1.2837 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 0.2116 2.3182 -0.0002 26 1 1.3249 4.5118 0.0090 27 1 2.4776 5.9499 1.2472 28 1 3.8539 5.2562 2.1376 29 1 4.0493 6.7849 1.2469 30 1 5.2372 8.4992 -0.7346 31 1 7.4106 0.8173 -0.0005 32 1 5.9304 0.3873 0.8895 33 1 5.9300 0.3869 -0.8904 34 1 4.0191 0.3788 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260048626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -38.721213 kcal Electronic energy + Delta-G solvation = -16356.401825 eV Core-core repulsion = 13765.902374 eV Total energy + Delta-G solvation = -2590.499451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00649 -38.76829 -35.90000 -33.14392 -32.19668 -29.76883 -29.68161 -27.78426 -27.16296 -24.22743 -23.46702 -21.41968 -19.37921 -18.33967 -17.21333 -17.07448 -16.76622 -16.58479 -15.73380 -15.26207 -14.91363 -14.81020 -14.69626 -14.41923 -13.73031 -13.48564 -13.32845 -13.23165 -12.80250 -12.77626 -12.76342 -12.30828 -12.15018 -11.90781 -11.76657 -11.48156 -11.06828 -10.75778 -10.50879 -10.34077 -9.10934 -8.24795 -8.02934 -6.18721 0.28824 0.58316 0.70504 1.42637 1.43950 1.51532 1.62207 2.44649 2.50091 2.81745 3.22375 3.89859 4.12220 4.25434 4.31449 4.35352 4.40099 4.44331 4.55891 4.63480 4.75391 4.83175 4.90088 5.00021 5.03804 5.26863 5.35724 5.40979 5.52194 5.65591 5.77827 6.08074 6.09577 6.38397 6.50615 6.88708 7.47767 8.98860 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.007436 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.662830 B = 3764.735440 C = 4596.688075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.120 3.880 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.080 4.080 7 C 0.076 3.924 8 H 0.022 0.978 9 C -0.121 4.121 10 C -0.519 4.519 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.915 5.915 14 Si 0.951 3.049 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.276 1.276 18 C -0.069 4.069 19 S -0.142 6.142 20 C -0.145 4.145 21 C -0.172 4.172 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.124 0.876 25 H 0.153 0.847 26 H 0.125 0.875 27 H 0.033 0.967 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.261 0.739 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -14.488 1.823 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.074 3.926 4 C -0.226 4.226 5 C -0.091 4.091 6 C -0.085 4.085 7 C 0.057 3.943 8 H 0.040 0.960 9 C -0.178 4.178 10 C -0.557 4.557 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.554 5.554 14 Si 0.777 3.223 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.201 1.201 18 C -0.182 4.182 19 S 0.101 5.899 20 C -0.313 4.313 21 C -0.197 4.197 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.142 0.858 25 H 0.171 0.829 26 H 0.143 0.857 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.519 -13.618 1.858 14.468 hybrid contribution -1.084 0.010 -0.735 1.310 sum -5.603 -13.608 1.123 14.759 Atomic orbital electron populations 1.23342 0.76531 1.05560 1.02170 1.85994 1.23403 1.26105 1.89058 1.18728 0.91654 0.84677 0.97562 1.21424 1.00961 0.91332 1.08932 1.20851 0.93504 0.97623 0.97108 1.20155 0.94208 0.94760 0.99343 1.17701 0.94511 0.87816 0.94286 0.96044 1.21626 0.99124 1.01386 0.95702 1.21317 1.27661 1.00181 1.06545 0.93303 1.25671 0.95042 0.98415 0.99099 1.70011 1.32456 1.16185 1.36769 0.85719 0.78676 0.77756 0.80159 1.19433 1.20810 1.20131 1.21501 0.96968 0.95305 1.04392 1.86184 0.99063 1.12319 1.92364 1.23823 1.06664 0.94749 1.06086 1.20401 0.92704 0.96404 1.10156 0.91838 0.92104 0.85836 0.82905 0.85747 0.94813 0.96167 0.92090 0.92964 0.85720 0.89001 0.89317 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.99 10.49 -92.35 -0.97 -9.96 16 3 C 0.12 3.91 6.68 22.49 0.15 4.06 16 4 C -0.21 -6.70 9.04 22.40 0.20 -6.49 16 5 C -0.07 -2.83 8.70 22.23 0.19 -2.64 16 6 C -0.08 -3.60 4.76 -19.71 -0.09 -3.69 16 7 C 0.08 3.96 2.35 -12.29 -0.03 3.93 16 8 H 0.02 1.24 6.02 -2.43 -0.01 1.22 16 9 C -0.12 -6.08 8.78 71.98 0.63 -5.45 16 10 C -0.52 -29.15 8.25 25.60 0.21 -28.94 16 11 H 0.05 2.73 7.61 -2.91 -0.02 2.71 16 12 C 0.02 0.92 5.30 84.66 0.45 1.37 16 13 N -0.91 -53.49 11.31 21.45 0.24 -53.24 16 14 Si 0.95 44.25 29.54 68.60 2.03 46.27 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C -0.07 -2.81 6.11 22.61 0.14 -2.67 16 19 S -0.14 -5.40 20.48 -56.49 -1.16 -6.55 16 20 C -0.15 -3.55 9.15 113.37 1.04 -2.51 16 21 C -0.17 -5.96 9.30 22.50 0.21 -5.75 16 22 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 23 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.15 3.84 6.29 -2.91 -0.02 3.82 16 26 H 0.12 4.97 7.55 -2.91 -0.02 4.95 16 27 H 0.03 1.59 7.37 -2.38 -0.02 1.57 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 3.37 6.06 -2.39 -0.01 3.35 16 30 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 31 H 0.12 2.45 8.14 -2.39 -0.02 2.44 16 32 H 0.09 2.00 7.75 -2.39 -0.02 1.98 16 33 H 0.09 2.00 7.75 -2.39 -0.02 1.99 16 34 H 0.14 4.21 5.88 -2.91 -0.02 4.19 16 Total: -1.00 -65.50 291.69 5.45 -60.06 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.09 Total: 10.79 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.21 Total: -47.36 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.24 Total: -53.24 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.97 Total: -9.96 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -1.16 Total: -6.55 kcal Total: -65.50 5.45 -60.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260048626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.336 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds