Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76208 * 102.99996 * 2 1 4 4 C 1.39038 * 120.05188 * 0.29752 * 3 2 1 5 5 C 1.38085 * 120.03022 * 180.25440 * 4 3 2 6 6 C 1.38238 * 120.13438 * 359.44486 * 5 4 3 7 7 C 1.50700 * 119.94850 * 180.25566 * 6 5 4 8 8 C 1.52995 * 109.47088 * 243.25253 * 7 6 5 9 9 C 1.52999 * 109.46974 * 3.25233 * 7 6 5 10 10 C 1.50700 * 109.47172 * 123.25641 * 7 6 5 11 11 H 1.08005 * 119.99599 * 359.63379 * 10 7 6 12 12 C 1.37871 * 120.00197 * 179.64490 * 10 7 6 13 13 N 1.31514 * 120.00155 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 120.00114 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47039 * 89.99941 * 14 12 10 16 16 H 1.48502 * 109.47094 * 209.99826 * 14 12 10 17 17 H 1.48497 * 109.46881 * 329.99478 * 14 12 10 18 18 C 1.38784 * 120.10343 * 0.27859 * 6 5 4 19 19 O 1.35893 * 120.01955 * 179.97438 * 18 6 5 20 20 C 1.38602 * 119.97116 * 0.02562 * 18 6 5 21 21 H 1.09002 * 109.47210 * 59.99757 * 1 2 3 22 22 H 1.09003 * 109.47294 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47235 * 300.00142 * 1 2 3 24 24 H 1.08005 * 119.98565 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.93481 * 179.72741 * 5 4 3 26 26 H 1.09000 * 109.47062 * 60.00127 * 8 7 6 27 27 H 1.09001 * 109.47024 * 180.02562 * 8 7 6 28 28 H 1.09004 * 109.47364 * 300.00137 * 8 7 6 29 29 H 1.09005 * 109.46979 * 60.00580 * 9 7 6 30 30 H 1.09001 * 109.46976 * 179.97438 * 9 7 6 31 31 H 1.09000 * 109.47346 * 299.99977 * 9 7 6 32 32 H 0.97000 * 120.00511 * 180.02562 * 13 12 10 33 33 H 0.96696 * 114.00115 * 90.00327 * 19 18 6 34 34 H 1.07995 * 120.07414 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1944 2.6661 0.0062 5 6 1.5055 4.0114 0.0009 6 6 2.8266 4.4182 0.0010 7 6 3.1614 5.8876 0.0010 8 6 3.9077 6.2406 -1.2871 9 6 1.8704 6.7047 0.0828 10 6 4.0326 6.2043 1.1892 11 1 4.3107 5.4211 1.8789 12 6 4.4744 7.4938 1.3958 13 7 4.1360 8.4475 0.5558 14 14 5.5538 7.8865 2.8690 15 1 6.9814 7.7220 2.4946 16 1 5.3132 9.2873 3.2995 17 1 5.2247 6.9626 3.9840 18 6 3.8452 3.4756 0.0005 19 8 5.1434 3.8774 0.0001 20 6 3.5379 2.1241 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.1613 2.3510 0.0107 25 1 0.7150 4.7473 0.0014 26 1 3.2776 6.0115 -2.1465 27 1 4.1502 7.3033 -1.2868 28 1 4.8274 5.6584 -1.3454 29 1 1.3388 6.4532 1.0006 30 1 2.1126 7.7675 0.0833 31 1 1.2403 6.4756 -0.7766 32 1 4.4472 9.3547 0.7010 33 1 5.5195 3.9936 0.8833 34 1 4.3292 1.3891 -0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = -39.190593 kcal Electronic energy + Delta-G solvation = -16747.151662 eV Core-core repulsion = 14156.631857 eV Total energy + Delta-G solvation = -2590.519805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89287 -37.38327 -37.03814 -33.53299 -31.23150 -30.46098 -29.22384 -27.65042 -27.18432 -24.12580 -23.07808 -20.79796 -19.51272 -18.06471 -17.48675 -17.05400 -16.56699 -15.99962 -15.66316 -15.03581 -14.84643 -14.66652 -14.52919 -13.72504 -13.53677 -13.31163 -13.23872 -13.00940 -12.83885 -12.59821 -12.52858 -12.30083 -12.10187 -11.92877 -11.41979 -11.27982 -10.97402 -10.66810 -10.30352 -10.17512 -9.55873 -8.23165 -7.93933 -6.10464 0.34962 0.42199 0.63694 1.45077 1.48007 1.54401 1.54627 2.47344 2.74615 3.27408 3.61246 4.00549 4.13477 4.28827 4.31718 4.34700 4.62130 4.84285 4.86781 4.89322 4.97593 5.04566 5.08825 5.14701 5.25902 5.44651 5.55015 5.61820 5.69681 5.78695 5.94174 6.20308 6.27041 6.47275 6.90772 7.04145 7.55127 9.03782 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.034208 B = 0.006199 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.318988 B = 4515.990085 C = 4767.609234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.146 6.146 3 C -0.095 4.095 4 C -0.138 4.138 5 C -0.109 4.109 6 C -0.084 4.084 7 C 0.097 3.903 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.499 4.499 11 H 0.049 0.951 12 C 0.023 3.977 13 N -0.907 5.907 14 Si 0.946 3.054 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.272 1.272 18 C 0.116 3.884 19 O -0.495 6.495 20 C -0.139 4.139 21 H 0.091 0.909 22 H 0.129 0.871 23 H 0.091 0.909 24 H 0.149 0.851 25 H 0.135 0.865 26 H 0.009 0.991 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.257 0.743 33 H 0.394 0.606 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.792 -13.104 -0.038 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.094 5.906 3 C -0.207 4.207 4 C -0.161 4.161 5 C -0.129 4.129 6 C -0.087 4.087 7 C 0.097 3.903 8 C -0.175 4.175 9 C -0.182 4.182 10 C -0.537 4.537 11 H 0.067 0.933 12 C -0.175 4.175 13 N -0.546 5.546 14 Si 0.773 3.227 15 H -0.205 1.205 16 H -0.216 1.216 17 H -0.197 1.197 18 C 0.069 3.931 19 O -0.307 6.307 20 C -0.163 4.163 21 H 0.110 0.890 22 H 0.147 0.853 23 H 0.110 0.890 24 H 0.166 0.834 25 H 0.153 0.847 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.252 0.748 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.181 -13.983 -0.664 15.303 hybrid contribution 0.125 1.845 1.185 2.196 sum -6.057 -12.138 0.522 13.576 Atomic orbital electron populations 1.23765 0.91539 1.08506 1.06481 1.85274 1.10037 1.01979 1.93328 1.21528 0.95682 0.97419 1.06068 1.21338 0.99023 0.92280 1.03501 1.21211 0.95939 0.95942 0.99771 1.21014 0.93195 0.97586 0.96894 1.17099 0.93265 0.85903 0.94068 1.21677 0.98316 1.02267 0.95207 1.21777 0.96530 1.02633 0.97304 1.21084 1.30367 0.93658 1.08593 0.93316 1.25503 0.97308 0.96403 0.98332 1.69944 1.46121 1.01254 1.37295 0.85750 0.79417 0.77077 0.80466 1.20518 1.21608 1.19677 1.18307 0.84394 0.90473 0.99899 1.84701 1.22460 1.89349 1.34185 1.21036 0.95666 0.94932 1.04669 0.89004 0.85277 0.89022 0.83368 0.84708 0.97187 0.92084 0.94626 0.95124 0.92179 0.95269 0.93330 0.74778 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.15 113.37 1.04 -1.03 16 2 S -0.15 -3.57 22.56 -56.49 -1.27 -4.84 16 3 C -0.09 -2.98 6.11 22.61 0.14 -2.84 16 4 C -0.14 -4.22 9.36 22.43 0.21 -4.01 16 5 C -0.11 -3.98 8.97 22.23 0.20 -3.78 16 6 C -0.08 -3.59 4.74 -19.73 -0.09 -3.68 16 7 C 0.10 4.64 0.48 -53.68 -0.03 4.62 16 8 C -0.12 -5.82 8.06 71.98 0.58 -5.24 16 9 C -0.12 -5.80 6.92 71.98 0.50 -5.30 16 10 C -0.50 -25.53 6.71 25.60 0.17 -25.36 16 11 H 0.05 2.45 6.71 -2.91 -0.02 2.43 16 12 C 0.02 1.21 5.15 84.65 0.44 1.65 16 13 N -0.91 -49.44 9.35 21.45 0.20 -49.24 16 14 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.12 4.67 6.15 22.49 0.14 4.80 16 19 O -0.50 -20.21 10.50 -92.35 -0.97 -21.18 16 20 C -0.14 -4.89 9.73 22.50 0.22 -4.67 16 21 H 0.09 1.31 7.76 -2.39 -0.02 1.29 16 22 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.09 1.31 7.73 -2.39 -0.02 1.29 16 24 H 0.15 3.44 5.87 -2.91 -0.02 3.42 16 25 H 0.14 4.63 5.89 -2.91 -0.02 4.62 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.06 3.29 6.04 -2.39 -0.01 3.28 16 28 H 0.03 1.78 6.40 -2.38 -0.02 1.76 16 29 H 0.03 1.35 7.66 -2.38 -0.02 1.33 16 30 H 0.06 3.10 6.10 -2.39 -0.01 3.09 16 31 H 0.03 1.20 7.36 -2.39 -0.02 1.18 16 32 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 33 H 0.39 14.11 8.02 -74.06 -0.59 13.52 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -58.95 282.99 4.01 -54.94 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.52 Total: 21.16 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.51 Total: -44.84 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.20 Total: -49.24 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.97 Total: -21.18 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.27 Total: -4.84 kcal Total: -58.95 4.01 -54.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -58.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds