Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47378 * 2 1 4 4 C 1.32625 * 125.17779 * 89.97622 * 3 2 1 5 5 C 1.40119 * 115.63654 * 179.97438 * 4 3 2 6 6 C 1.33821 * 113.70759 * 0.03155 * 5 4 3 7 7 S 1.75589 * 125.17401 * 269.97763 * 3 2 1 8 8 C 1.52114 * 110.67988 * 179.97438 * 6 5 4 9 9 C 1.54216 * 104.84158 * 342.61593 * 8 6 5 10 10 H 1.09007 * 110.97819 * 144.57835 * 9 8 6 11 11 C 1.52997 * 110.97870 * 268.35816 * 9 8 6 12 12 C 1.52795 * 136.54127 * 180.09640 * 5 4 3 13 13 O 1.42897 * 110.32407 * 316.41372 * 12 5 4 14 14 C 1.50694 * 110.32664 * 78.62888 * 12 5 4 15 15 H 1.08007 * 120.00056 * 118.55178 * 14 12 5 16 16 C 1.37875 * 120.00556 * 298.54639 * 14 12 5 17 17 N 1.31514 * 119.99568 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00437 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47007 * 90.00133 * 18 16 14 20 20 H 1.48500 * 109.46690 * 210.00103 * 18 16 14 21 21 H 1.48501 * 109.47028 * 329.99814 * 18 16 14 22 22 H 1.09003 * 109.46810 * 300.00351 * 1 2 3 23 23 H 1.09003 * 109.47373 * 59.99814 * 1 2 3 24 24 H 1.08999 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47095 * 239.99856 * 2 1 3 26 26 H 1.08998 * 109.46935 * 120.00030 * 2 1 3 27 27 H 1.08003 * 122.17949 * 359.96354 * 4 3 2 28 28 H 1.08994 * 110.37081 * 223.77460 * 8 6 5 29 29 H 1.08997 * 110.36329 * 101.45212 * 8 6 5 30 30 H 1.09002 * 109.47157 * 172.34014 * 11 9 8 31 31 H 1.08996 * 109.47114 * 292.34134 * 11 9 8 32 32 H 1.09000 * 109.47110 * 52.34306 * 11 9 8 33 33 H 0.96705 * 113.99732 * 61.45985 * 13 12 5 34 34 H 0.96997 * 120.00532 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2867 2.1413 1.0840 5 6 2.7480 3.4439 0.8518 6 6 2.8575 3.7525 -0.4457 7 16 2.3701 2.3742 -1.4353 8 6 3.3614 5.1774 -0.6183 9 6 3.1258 5.8481 0.7502 10 1 3.9214 6.5572 0.9794 11 6 1.7570 6.5300 0.7977 12 6 3.1722 4.6387 1.7044 13 8 2.2591 4.8246 2.7877 14 6 4.5717 4.4388 2.2263 15 1 5.3540 5.1317 1.9534 16 6 4.8536 3.3714 3.0523 17 7 3.9012 2.5275 3.3842 18 14 6.5882 3.1240 3.6998 19 1 6.7422 3.8432 4.9898 20 1 6.8367 1.6748 3.9082 21 1 7.5645 3.6572 2.7161 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.1471 1.7496 2.0808 28 1 2.7929 5.6895 -1.3945 29 1 4.4236 5.1770 -0.8627 30 1 1.5587 6.8765 1.8119 31 1 1.7507 7.3801 0.1155 32 1 0.9864 5.8191 0.4995 33 1 2.2135 4.0748 3.3967 34 1 4.0994 1.7763 3.9650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = -27.070747 kcal Electronic energy + Delta-G solvation = -17135.896254 eV Core-core repulsion = 14545.902005 eV Total energy + Delta-G solvation = -2589.994249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.96409 -35.59096 -33.84349 -32.36489 -31.94201 -28.41975 -26.99900 -25.35818 -23.27739 -22.75029 -20.64456 -18.60229 -17.68596 -16.97371 -16.22430 -14.99784 -14.34202 -14.05852 -13.84480 -13.76748 -13.26037 -12.72998 -12.25622 -12.07232 -11.89545 -11.58242 -11.44349 -11.24952 -11.13121 -10.97369 -10.77868 -10.62710 -10.46466 -10.30339 -10.10252 -9.99011 -9.90349 -9.29588 -8.60705 -8.25932 -7.44462 -7.18417 -6.20797 -4.31950 2.05269 2.45434 2.95827 3.21288 3.28275 3.31561 3.96400 4.29308 5.04641 5.26420 5.43400 5.58498 5.65217 5.67210 5.83729 5.97467 6.10091 6.15475 6.27000 6.27842 6.34724 6.46857 6.55037 6.56936 6.64297 6.91108 7.00071 7.05859 7.27217 7.30072 7.62544 7.75334 7.84923 8.08514 8.69903 9.35267 9.47360 10.81490 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.010542 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.307664 B = 2655.333340 C = 3426.436380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.211 4.211 4 C -0.061 4.061 5 C -0.064 4.064 6 C -0.231 4.231 7 S 0.027 5.973 8 C -0.024 4.024 9 C -0.075 4.075 10 H 0.079 0.921 11 C -0.125 4.125 12 C 0.309 3.691 13 O -0.582 6.582 14 C -0.530 4.530 15 H 0.064 0.936 16 C 0.075 3.925 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.378 0.622 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -1.565 -5.590 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.327 4.327 4 C -0.092 4.092 5 C -0.076 4.076 6 C -0.347 4.347 7 S 0.290 5.710 8 C -0.064 4.064 9 C -0.095 4.095 10 H 0.097 0.903 11 C -0.182 4.182 12 C 0.267 3.733 13 O -0.390 6.390 14 C -0.568 4.568 15 H 0.082 0.918 16 C -0.128 4.128 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.228 0.772 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.356 -1.458 -7.357 8.673 hybrid contribution 1.385 -0.762 2.046 2.586 sum -2.971 -2.221 -5.311 6.478 Atomic orbital electron populations 1.21772 0.95278 1.00874 1.02280 1.19892 0.95376 0.90654 1.02074 1.23867 1.13356 1.00345 0.95090 1.19965 0.97041 0.92969 0.99188 1.21542 0.94970 0.96322 0.94785 1.25360 1.12396 1.00249 0.96698 1.83259 1.70025 1.06893 1.10790 1.20679 0.99588 0.88659 0.97459 1.21840 0.97432 0.96934 0.93305 0.90309 1.21501 0.96809 0.98652 1.01270 1.18236 0.87668 0.84817 0.82539 1.86154 1.65291 1.46699 1.40891 1.21617 0.94739 1.11110 1.29345 0.91796 1.24986 0.97590 0.94858 0.95356 1.69644 1.32491 1.14947 1.35516 0.86478 0.84257 0.77327 0.79295 1.20413 1.21100 1.19842 0.92350 0.92860 0.92943 0.91952 0.90682 0.83541 0.92489 0.91155 0.91888 0.94490 0.93331 0.77228 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.04 -0.64 6.42 -27.88 -0.18 -0.82 16 3 C -0.21 -4.19 5.73 -36.21 -0.21 -4.40 16 4 C -0.06 -1.40 8.96 -40.78 -0.37 -1.76 16 5 C -0.06 -1.54 4.98 -104.42 -0.52 -2.06 16 6 C -0.23 -5.08 7.35 -35.16 -0.26 -5.34 16 7 S 0.03 0.51 23.33 -107.50 -2.51 -1.99 16 8 C -0.02 -0.48 6.33 -26.55 -0.17 -0.65 16 9 C -0.08 -1.59 3.16 -89.40 -0.28 -1.88 16 10 H 0.08 1.63 7.74 -51.92 -0.40 1.23 16 11 C -0.13 -2.38 8.62 37.16 0.32 -2.06 16 12 C 0.31 7.59 0.75 -91.30 -0.07 7.53 16 13 O -0.58 -14.72 11.57 -35.23 -0.41 -15.13 16 14 C -0.53 -14.05 8.24 -34.44 -0.28 -14.33 16 15 H 0.06 1.69 7.57 -52.48 -0.40 1.29 16 16 C 0.08 1.96 5.26 -17.82 -0.09 1.86 16 17 N -0.89 -22.81 8.92 55.43 0.49 -22.31 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.15 3.46 6.80 -52.48 -0.36 3.11 16 28 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.24 7.49 -51.93 -0.39 0.85 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.38 9.72 7.33 45.56 0.33 10.05 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -26.89 288.65 -8.97 -35.86 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.14 Total: 9.14 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -1.74 Total: -25.52 kcal Atomic # 7 Polarization: -22.81 SS G_CDS: 0.49 Total: -22.31 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.41 Total: -15.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.51 Total: -1.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.89 -8.97 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.786 kcal (2) G-P(sol) polarization free energy of solvation -26.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds