Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47378 * 2 1 4 4 C 1.32625 * 125.17779 * 89.97622 * 3 2 1 5 5 C 1.40119 * 115.63654 * 179.97438 * 4 3 2 6 6 C 1.33821 * 113.70759 * 0.03155 * 5 4 3 7 7 S 1.75589 * 125.17401 * 269.97763 * 3 2 1 8 8 C 1.52114 * 110.67988 * 179.97438 * 6 5 4 9 9 C 1.54216 * 104.84158 * 342.61593 * 8 6 5 10 10 H 1.09007 * 110.97819 * 144.57835 * 9 8 6 11 11 C 1.52997 * 110.97870 * 268.35816 * 9 8 6 12 12 C 1.52795 * 136.54127 * 180.09640 * 5 4 3 13 13 O 1.42897 * 110.32407 * 316.41372 * 12 5 4 14 14 C 1.50694 * 110.32664 * 78.62888 * 12 5 4 15 15 H 1.08007 * 120.00056 * 118.55178 * 14 12 5 16 16 C 1.37875 * 120.00556 * 298.54639 * 14 12 5 17 17 N 1.31514 * 119.99568 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00437 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47007 * 90.00133 * 18 16 14 20 20 H 1.48500 * 109.46690 * 210.00103 * 18 16 14 21 21 H 1.48501 * 109.47028 * 329.99814 * 18 16 14 22 22 H 1.09003 * 109.46810 * 300.00351 * 1 2 3 23 23 H 1.09003 * 109.47373 * 59.99814 * 1 2 3 24 24 H 1.08999 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47095 * 239.99856 * 2 1 3 26 26 H 1.08998 * 109.46935 * 120.00030 * 2 1 3 27 27 H 1.08003 * 122.17949 * 359.96354 * 4 3 2 28 28 H 1.08994 * 110.37081 * 223.77460 * 8 6 5 29 29 H 1.08997 * 110.36329 * 101.45212 * 8 6 5 30 30 H 1.09002 * 109.47157 * 172.34014 * 11 9 8 31 31 H 1.08996 * 109.47114 * 292.34134 * 11 9 8 32 32 H 1.09000 * 109.47110 * 52.34306 * 11 9 8 33 33 H 0.96705 * 113.99732 * 61.45985 * 13 12 5 34 34 H 0.96997 * 120.00532 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2867 2.1413 1.0840 5 6 2.7480 3.4439 0.8518 6 6 2.8575 3.7525 -0.4457 7 16 2.3701 2.3742 -1.4353 8 6 3.3614 5.1774 -0.6183 9 6 3.1258 5.8481 0.7502 10 1 3.9214 6.5572 0.9794 11 6 1.7570 6.5300 0.7977 12 6 3.1722 4.6387 1.7044 13 8 2.2591 4.8246 2.7877 14 6 4.5717 4.4388 2.2263 15 1 5.3540 5.1317 1.9534 16 6 4.8536 3.3714 3.0523 17 7 3.9012 2.5275 3.3842 18 14 6.5882 3.1240 3.6998 19 1 6.7422 3.8432 4.9898 20 1 6.8367 1.6748 3.9082 21 1 7.5645 3.6572 2.7161 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.1471 1.7496 2.0808 28 1 2.7929 5.6895 -1.3945 29 1 4.4236 5.1770 -0.8627 30 1 1.5587 6.8765 1.8119 31 1 1.7507 7.3801 0.1155 32 1 0.9864 5.8191 0.4995 33 1 2.2135 4.0748 3.3967 34 1 4.0994 1.7763 3.9650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260226068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = -41.593330 kcal Electronic energy + Delta-G solvation = -17136.526000 eV Core-core repulsion = 14545.902005 eV Total energy + Delta-G solvation = -2590.623995 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66461 -37.18593 -35.63174 -34.19291 -33.51118 -29.94783 -28.88334 -26.86240 -25.08854 -24.18913 -22.19102 -20.29756 -19.41396 -18.85722 -17.83986 -16.91740 -16.10292 -15.76043 -15.25951 -15.17886 -14.83618 -14.26223 -13.94484 -13.61979 -13.43804 -13.29400 -13.18190 -12.88797 -12.68608 -12.54176 -12.42527 -12.27684 -12.09465 -12.00416 -11.71233 -11.58718 -11.48038 -11.06115 -10.54667 -10.16252 -9.03940 -8.83789 -8.13938 -6.33753 0.40711 0.86719 1.31453 1.37673 1.39818 1.47683 2.23037 2.39087 3.07361 3.82074 3.96166 4.10029 4.19069 4.24855 4.48102 4.51289 4.62232 4.72775 4.78229 4.93078 4.97928 5.01743 5.08217 5.11071 5.21241 5.35489 5.36396 5.42985 5.57513 5.63845 5.80121 5.89890 6.12014 6.17765 6.70216 7.35379 7.46532 8.84102 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.010542 C = 0.008170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.307664 B = 2655.333340 C = 3426.436380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.097 4.097 5 C -0.093 4.093 6 C -0.250 4.250 7 S 0.082 5.918 8 C -0.020 4.020 9 C -0.079 4.079 10 H 0.077 0.923 11 C -0.115 4.115 12 C 0.293 3.707 13 O -0.589 6.589 14 C -0.557 4.557 15 H 0.054 0.946 16 C 0.037 3.963 17 N -0.893 5.893 18 Si 0.951 3.049 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.275 1.275 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.370 0.630 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -2.141 -7.265 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.319 4.319 4 C -0.127 4.127 5 C -0.105 4.105 6 C -0.366 4.366 7 S 0.346 5.654 8 C -0.059 4.059 9 C -0.099 4.099 10 H 0.095 0.905 11 C -0.172 4.172 12 C 0.252 3.748 13 O -0.397 6.397 14 C -0.595 4.595 15 H 0.073 0.927 16 C -0.165 4.165 17 N -0.532 5.532 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.200 1.200 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.219 0.781 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.561 -2.024 -9.038 10.324 hybrid contribution 1.418 -0.626 2.544 2.979 sum -3.143 -2.650 -6.494 7.686 Atomic orbital electron populations 1.21726 0.93421 1.02706 1.01754 1.20069 0.96902 0.88243 1.03043 1.24425 1.10827 1.01794 0.94815 1.19881 1.00033 0.93511 0.99293 1.21543 0.96711 0.96672 0.95590 1.25767 1.11986 1.01884 0.96959 1.82974 1.68649 1.04786 1.09003 1.20694 1.00098 0.87806 0.97347 1.21887 0.98576 0.96051 0.93358 0.90477 1.21412 0.95095 0.99338 1.01388 1.18499 0.86564 0.86975 0.82774 1.86140 1.65735 1.46418 1.41372 1.21864 0.95770 1.11413 1.30412 0.92732 1.25600 1.00492 0.94779 0.95645 1.69750 1.33383 1.14795 1.35259 0.85666 0.80800 0.77126 0.78645 1.20102 1.20844 1.19992 0.93647 0.92606 0.89975 0.89957 0.90691 0.85522 0.89543 0.90979 0.93226 0.90944 0.94375 0.78126 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.89 71.98 0.71 -2.76 16 2 C -0.04 -1.28 6.42 29.85 0.19 -1.09 16 3 C -0.20 -7.81 5.73 24.52 0.14 -7.67 16 4 C -0.10 -4.47 8.96 21.56 0.19 -4.28 16 5 C -0.09 -4.49 4.98 -19.73 -0.10 -4.59 16 6 C -0.25 -10.73 7.35 25.13 0.18 -10.54 16 7 S 0.08 2.98 23.33 -56.49 -1.32 1.66 16 8 C -0.02 -0.76 6.33 30.71 0.19 -0.57 16 9 C -0.08 -3.31 3.16 -10.00 -0.03 -3.34 16 10 H 0.08 3.19 7.74 -2.38 -0.02 3.18 16 11 C -0.12 -4.26 8.62 71.98 0.62 -3.64 16 12 C 0.29 14.66 0.75 -11.23 -0.01 14.65 16 13 O -0.59 -30.81 11.57 -148.98 -1.72 -32.53 16 14 C -0.56 -30.10 8.24 25.60 0.21 -29.89 16 15 H 0.05 2.95 7.57 -2.91 -0.02 2.92 16 16 C 0.04 1.95 5.26 84.65 0.45 2.39 16 17 N -0.89 -47.02 8.92 21.45 0.19 -46.83 16 18 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.13 6.23 6.80 -2.91 -0.02 6.21 16 28 H 0.09 2.77 7.92 -2.39 -0.02 2.75 16 29 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.05 1.94 7.49 -2.39 -0.02 1.92 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.37 19.95 7.33 -74.05 -0.54 19.41 16 34 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -57.78 288.65 2.49 -55.30 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.55 Total: 28.97 kcal Atomic # 6 Polarization: -54.08 SS G_CDS: 2.75 Total: -51.33 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.19 Total: -46.83 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.72 Total: -32.53 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.32 Total: 1.66 kcal Total: -57.78 2.49 -55.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.704 kcal (2) G-P(sol) polarization free energy of solvation -57.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds