Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48500 * 109.47220 * 264.48377 * 3 2 1 5 5 H 1.48507 * 109.46768 * 24.48149 * 3 2 1 6 6 H 1.48500 * 109.47431 * 144.47993 * 3 2 1 7 7 C 1.37878 * 119.99893 * 179.72070 * 2 1 3 8 8 H 1.08003 * 120.00292 * 7.26129 * 7 2 1 9 9 C 1.50704 * 120.00071 * 187.25681 * 7 2 1 10 10 H 1.09001 * 109.46920 * 5.05489 * 9 7 2 11 11 C 1.50694 * 109.47220 * 125.06144 * 9 7 2 12 12 C 1.38273 * 119.98766 * 57.60832 * 11 9 7 13 13 C 1.38220 * 120.04754 * 179.76809 * 12 11 9 14 14 C 1.38219 * 120.03014 * 0.50651 * 13 12 11 15 15 C 1.38439 * 119.97294 * 359.75052 * 14 13 12 16 16 F 1.35097 * 120.02584 * 179.97438 * 15 14 13 17 17 C 1.38174 * 119.98652 * 237.88509 * 11 9 7 18 18 C 1.50695 * 120.01549 * 359.95578 * 17 11 9 19 19 F 1.39905 * 109.47229 * 84.31944 * 18 17 11 20 20 C 1.53004 * 109.47104 * 245.06323 * 9 7 2 21 21 C 1.52995 * 117.50123 * 125.91045 * 20 9 7 22 22 C 1.52997 * 117.49924 * 57.24521 * 20 9 7 23 23 H 0.96999 * 120.00134 * 359.97438 * 1 2 3 24 24 H 1.07999 * 119.97215 * 0.02562 * 12 11 9 25 25 H 1.08004 * 119.98591 * 180.25931 * 13 12 11 26 26 H 1.08000 * 120.01803 * 179.72584 * 14 13 12 27 27 H 1.08995 * 109.47736 * 204.32138 * 18 17 11 28 28 H 1.09007 * 109.46945 * 324.32569 * 18 17 11 29 29 H 1.08996 * 115.54591 * 271.58364 * 20 9 7 30 30 H 1.09000 * 117.49740 * 359.97438 * 21 20 9 31 31 H 1.08993 * 117.50117 * 145.02234 * 21 20 9 32 32 H 1.09004 * 117.50223 * 214.97639 * 22 20 9 33 33 H 1.08996 * 117.50256 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6132 1.9791 -1.3936 5 1 1.3931 2.6835 0.5802 6 1 3.4835 1.4767 0.8134 7 6 2.0045 -1.1941 0.0058 8 1 1.4710 -2.1262 -0.1079 9 6 3.5025 -1.1985 0.1707 10 1 3.8502 -0.1829 0.3600 11 6 3.8774 -2.0826 1.3320 12 6 3.4957 -3.4116 1.3403 13 6 3.8431 -4.2248 2.4026 14 6 4.5634 -3.7077 3.4630 15 6 4.9415 -2.3760 3.4583 16 9 5.6451 -1.8694 4.4943 17 6 4.5974 -1.5634 2.3909 18 6 5.0087 -0.1137 2.3841 19 9 3.9580 0.6715 2.8706 20 6 4.1546 -1.7309 -1.1069 21 6 5.2222 -0.8593 -1.7712 22 6 3.8413 -1.0035 -2.4159 23 1 -0.4850 0.8400 0.0004 24 1 2.9295 -3.8155 0.5141 25 1 3.5481 -5.2638 2.4061 26 1 4.8308 -4.3422 4.2950 27 1 5.8850 0.0184 3.0187 28 1 5.2485 0.1911 1.3654 29 1 4.2881 -2.8117 -1.1513 30 1 5.4597 0.0936 -1.2983 31 1 6.0579 -1.3667 -2.2530 32 1 3.7693 -1.6058 -3.3217 33 1 3.1703 -0.1460 -2.3671 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260247051.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = -51.161860 kcal Electronic energy + Delta-G solvation = -18926.243343 eV Core-core repulsion = 15781.364038 eV Total energy + Delta-G solvation = -3144.879305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.62619 -47.07764 -39.01579 -36.67224 -32.99444 -32.04267 -30.83561 -27.79387 -25.95157 -23.68125 -21.93955 -21.58126 -20.93160 -19.15448 -17.40158 -16.88920 -16.13353 -15.72226 -15.63554 -14.98804 -14.81638 -14.71693 -14.26478 -14.06941 -13.62980 -13.01192 -12.66362 -12.22213 -11.88096 -11.86308 -11.67965 -11.18459 -11.01014 -10.65171 -10.55397 -10.47425 -10.39068 -9.75817 -9.70480 -9.29362 -8.90163 -8.55754 -8.38479 -8.02463 -6.16364 -4.15825 1.56514 1.74928 3.26572 3.34454 3.38106 4.05451 4.36547 4.58028 4.61347 4.86272 5.02890 5.18579 5.19329 5.43572 5.47625 5.59647 5.68589 5.76432 5.85500 5.96197 6.02820 6.14939 6.29414 6.34175 6.49919 6.53579 6.64308 6.68682 6.81059 6.90292 7.09548 7.26874 7.38042 7.60439 8.39234 8.86886 9.44806 10.95609 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.009991 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.669346 B = 2801.888231 C = 3125.644444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.080 3.920 3 Si 0.862 3.138 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.247 1.247 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.055 3.945 10 H 0.061 0.939 11 C 0.025 3.975 12 C -0.120 4.120 13 C -0.086 4.086 14 C -0.184 4.184 15 C 0.112 3.888 16 F -0.147 7.147 17 C -0.185 4.185 18 C 0.110 3.890 19 F -0.204 7.204 20 C -0.122 4.122 21 C -0.207 4.207 22 C -0.165 4.165 23 H 0.266 0.734 24 H 0.131 0.869 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.735 -4.307 1.974 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.123 4.123 3 Si 0.689 3.311 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.172 1.172 7 C -0.534 4.534 8 H 0.096 0.904 9 C 0.036 3.964 10 H 0.078 0.922 11 C 0.024 3.976 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.203 4.203 15 C 0.093 3.907 16 F -0.125 7.125 17 C -0.187 4.187 18 C 0.055 3.945 19 F -0.185 7.185 20 C -0.140 4.140 21 C -0.244 4.244 22 C -0.202 4.202 23 H 0.076 0.924 24 H 0.149 0.851 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.546 -4.132 2.028 11.507 hybrid contribution 0.287 0.972 0.260 1.047 sum 10.834 -3.160 2.288 11.515 Atomic orbital electron populations 1.69881 1.06311 1.27222 1.49269 1.25019 0.94659 0.98794 0.93851 0.87171 0.81458 0.83988 0.78452 1.20292 1.21558 1.17199 1.20684 0.87819 0.94957 1.49941 0.90365 1.18290 0.97205 0.94341 0.86562 0.92150 1.20304 0.88083 0.94161 0.95032 1.21090 1.00133 0.93478 0.99082 1.20991 0.96603 0.99727 0.93103 1.20848 1.04562 0.93638 1.01205 1.17479 0.95790 0.92566 0.84904 1.91427 1.76536 1.87850 1.56710 1.20073 1.05911 0.96270 0.96398 1.20584 0.87233 0.85841 1.00841 1.92835 1.60419 1.75407 1.89805 1.22592 0.99450 0.96824 0.95164 1.23070 0.92801 1.01999 1.06561 1.22766 0.97206 1.03844 0.96400 0.92435 0.85103 0.85665 0.85571 0.90764 0.89569 0.89137 0.89999 0.90046 0.89996 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.86 20.92 26.39 -169.99 -4.49 16.44 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.25 -5.64 3.95 56.52 0.22 -5.42 16 7 C -0.50 -12.97 7.98 -34.44 -0.27 -13.25 16 8 H 0.08 2.21 7.73 -52.48 -0.41 1.80 16 9 C 0.05 1.19 1.82 -92.92 -0.17 1.02 16 10 H 0.06 1.34 1.82 -51.93 -0.09 1.25 16 11 C 0.02 0.50 4.77 -104.64 -0.50 0.00 16 12 C -0.12 -2.17 8.56 -39.58 -0.34 -2.51 16 13 C -0.09 -1.33 10.04 -39.59 -0.40 -1.72 16 14 C -0.18 -2.86 10.03 -39.51 -0.40 -3.26 16 15 C 0.11 1.98 7.24 -39.42 -0.29 1.69 16 16 F -0.15 -2.50 16.39 2.25 0.04 -2.46 16 17 C -0.19 -3.57 5.60 -104.56 -0.59 -4.15 16 18 C 0.11 2.02 6.46 36.00 0.23 2.25 16 19 F -0.20 -4.43 15.77 2.25 0.04 -4.39 16 20 C -0.12 -2.31 5.07 -90.62 -0.46 -2.77 16 21 C -0.21 -3.47 10.18 -26.69 -0.27 -3.74 16 22 C -0.17 -3.08 9.81 -26.69 -0.26 -3.34 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 24 H 0.13 2.32 7.73 -52.49 -0.41 1.91 16 25 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.07 1.15 7.48 -51.93 -0.39 0.76 16 28 H 0.09 1.52 6.19 -51.93 -0.32 1.20 16 29 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 30 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 2.00 7.07 -51.93 -0.37 1.63 16 LS Contribution 278.04 15.07 4.19 4.19 Total: -1.00 -29.03 278.04 -7.05 -36.08 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.80 Total: 3.47 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.81 Total: -27.65 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.77 Total: -25.67 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.07 Total: -6.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.49 Total: 16.44 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.03 -7.05 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247051.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.079 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds