Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.46883 * 239.99192 * 3 2 1 5 5 H 1.48495 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47204 * 120.00028 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.33643 * 122.74874 * 84.97979 * 10 9 7 12 12 S 1.76195 * 107.92201 * 179.80152 * 11 10 9 13 13 C 1.70980 * 90.28635 * 0.28001 * 12 11 10 14 14 C 1.50691 * 124.91964 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.50682 * 179.61644 * 14 13 12 16 16 C 1.53123 * 109.50296 * 299.69604 * 14 13 12 17 17 C 1.53120 * 109.21163 * 177.56339 * 16 14 13 18 18 C 1.53048 * 109.27450 * 302.43753 * 17 16 14 19 19 N 1.46848 * 109.57298 * 59.08726 * 18 17 16 20 20 C 1.46842 * 111.19688 * 298.28804 * 19 18 17 21 21 N 1.29036 * 110.16321 * 359.71291 * 13 12 11 22 22 H 0.96998 * 120.00816 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46821 * 59.99175 * 9 7 2 24 24 H 1.09004 * 109.46635 * 300.00225 * 9 7 2 25 25 H 1.08000 * 126.03665 * 0.02562 * 11 10 9 26 26 H 1.09002 * 109.52319 * 297.50132 * 16 14 13 27 27 H 1.08995 * 109.52318 * 57.62814 * 16 14 13 28 28 H 1.09000 * 109.50719 * 62.32149 * 17 16 14 29 29 H 1.09003 * 109.50116 * 182.43702 * 17 16 14 30 30 H 1.08999 * 109.41208 * 299.06816 * 18 17 16 31 31 H 1.09000 * 109.46050 * 179.13236 * 18 17 16 32 32 H 1.00895 * 110.99805 * 174.18748 * 19 18 17 33 33 H 1.08997 * 109.46434 * 301.72853 * 20 19 18 34 34 H 1.09006 * 109.45199 * 181.75359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.7750 -4.1301 1.1202 12 16 3.8476 -5.4541 0.6716 13 6 3.4635 -5.2177 -0.9777 14 6 4.0236 -6.0275 -2.1184 15 1 3.6056 -5.6689 -3.0590 16 6 5.5477 -5.8826 -2.1481 17 6 6.1150 -6.7555 -3.2710 18 6 5.6893 -8.2082 -3.0456 19 7 4.2235 -8.2939 -3.0260 20 6 3.6599 -7.5015 -1.9257 21 7 2.6202 -4.2491 -1.1036 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.5877 -3.7761 2.1232 26 1 5.8111 -4.8404 -2.3285 27 1 5.9628 -6.2030 -1.1926 28 1 5.7309 -6.4093 -4.2305 29 1 7.2030 -6.6896 -3.2687 30 1 6.0864 -8.5584 -2.0929 31 1 6.0787 -8.8300 -3.8518 32 1 3.9181 -9.2541 -2.9735 33 1 4.0665 -7.8549 -0.9782 34 1 2.5753 -7.6100 -1.9186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260927134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = 25.500100 kcal Electronic energy + Delta-G solvation = -16001.442673 eV Core-core repulsion = 13446.020818 eV Total energy + Delta-G solvation = -2555.421855 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49851 -38.33170 -33.53049 -32.59400 -31.63118 -29.80039 -27.27329 -24.82533 -23.87711 -23.33015 -21.38515 -20.06245 -18.74207 -17.25422 -16.34998 -16.29629 -15.02553 -14.76179 -14.56436 -14.24835 -13.99768 -13.61358 -13.11441 -12.95991 -12.54725 -12.45521 -12.08355 -11.59090 -11.34812 -11.09417 -10.93837 -10.75888 -10.66361 -10.55818 -10.43477 -9.74232 -9.47199 -8.98391 -8.83665 -8.62205 -8.41979 -7.91372 -6.04429 -4.07603 1.34719 1.95048 2.34521 3.32833 3.36502 3.39141 3.63406 3.92047 4.45089 4.52844 4.73165 4.75971 4.91684 5.16820 5.22195 5.31092 5.40672 5.51676 5.58304 5.70893 5.82255 5.84469 5.99713 6.04626 6.13642 6.28170 6.37089 6.79212 7.03803 7.16115 7.47738 7.56322 7.90629 8.28613 8.57322 8.94604 9.55197 11.05993 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.004939 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.502159 B = 5668.129579 C = 5911.547392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.084 3.916 10 C 0.111 3.889 11 C -0.261 4.261 12 S 0.044 5.956 13 C 0.048 3.952 14 C -0.004 4.004 15 H 0.106 0.894 16 C -0.115 4.115 17 C -0.116 4.116 18 C 0.055 3.945 19 N -0.688 5.688 20 C 0.067 3.933 21 N -0.454 5.454 22 H 0.263 0.737 23 H 0.039 0.961 24 H 0.037 0.963 25 H 0.171 0.829 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.345 0.655 33 H 0.035 0.965 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.605 -16.381 -2.508 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.045 3.955 10 C -0.018 4.018 11 C -0.398 4.398 12 S 0.296 5.704 13 C -0.232 4.232 14 C -0.027 4.027 15 H 0.124 0.876 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.074 4.074 19 N -0.319 5.319 20 C -0.063 4.063 21 N -0.168 5.168 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.189 0.811 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.053 0.947 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.807 -16.297 -2.934 19.774 hybrid contribution 0.082 1.184 0.914 1.498 sum 10.890 -15.114 -2.019 18.737 Atomic orbital electron populations 1.69936 1.05996 1.27025 1.50294 1.24966 0.94896 0.99187 0.95106 0.86562 0.79520 0.82701 0.78702 1.20159 1.21124 1.20192 1.20934 0.92894 0.89750 1.51315 0.92726 1.17998 0.91345 0.87299 0.98906 1.21248 0.98427 0.97031 0.85100 1.26707 1.05972 1.02693 1.04452 1.83392 1.46739 1.35003 1.05237 1.26814 1.00151 0.99373 0.96845 1.19705 0.95229 0.92401 0.95349 0.87571 1.21702 0.93603 1.00998 0.99078 1.21582 1.00053 0.94253 0.99499 1.21963 0.87889 0.97499 1.00030 1.60171 1.08878 1.15834 1.47030 1.21968 1.00230 0.92338 0.91795 1.66210 1.11430 1.06734 1.32463 0.92698 0.94285 0.94483 0.81113 0.90916 0.91869 0.90747 0.91242 0.95193 0.90723 0.83710 0.94690 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.72 9.09 -34.44 -0.31 -15.04 16 8 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.08 2.27 5.39 -29.04 -0.16 2.11 16 10 C 0.11 2.59 5.93 -84.23 -0.50 2.09 16 11 C -0.26 -5.22 11.14 29.12 0.32 -4.90 16 12 S 0.04 0.71 22.45 -107.50 -2.41 -1.70 16 13 C 0.05 0.85 6.04 -13.46 -0.08 0.77 16 14 C 0.00 -0.06 2.78 -91.69 -0.26 -0.31 16 15 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 16 C -0.12 -1.39 5.20 -26.61 -0.14 -1.53 16 17 C -0.12 -1.12 6.10 -26.64 -0.16 -1.28 16 18 C 0.06 0.49 6.55 -3.83 -0.03 0.46 16 19 N -0.69 -6.83 6.85 -113.81 -0.78 -7.61 16 20 C 0.07 0.79 5.73 -3.84 -0.02 0.77 16 21 N -0.45 -10.06 10.53 -8.06 -0.08 -10.15 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.17 3.16 8.06 -52.49 -0.42 2.74 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.34 2.70 8.90 -39.29 -0.35 2.35 16 33 H 0.03 0.40 7.89 -51.93 -0.41 -0.01 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -31.09 295.42 -9.47 -40.56 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.94 Total: -1.24 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.43 Total: -15.23 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.13 Total: -43.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.41 Total: -1.70 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.09 -9.47 -40.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.060 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds