Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99647 * 2 1 4 4 H 1.48503 * 109.46883 * 239.99192 * 3 2 1 5 5 H 1.48495 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47204 * 120.00028 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47276 * 179.97438 * 9 7 2 11 11 C 1.33643 * 122.74874 * 84.97979 * 10 9 7 12 12 S 1.76195 * 107.92201 * 179.80152 * 11 10 9 13 13 C 1.70980 * 90.28635 * 0.28001 * 12 11 10 14 14 C 1.50691 * 124.91964 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.50682 * 179.61644 * 14 13 12 16 16 C 1.53123 * 109.50296 * 299.69604 * 14 13 12 17 17 C 1.53120 * 109.21163 * 177.56339 * 16 14 13 18 18 C 1.53048 * 109.27450 * 302.43753 * 17 16 14 19 19 N 1.46848 * 109.57298 * 59.08726 * 18 17 16 20 20 C 1.46842 * 111.19688 * 298.28804 * 19 18 17 21 21 N 1.29036 * 110.16321 * 359.71291 * 13 12 11 22 22 H 0.96998 * 120.00816 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46821 * 59.99175 * 9 7 2 24 24 H 1.09004 * 109.46635 * 300.00225 * 9 7 2 25 25 H 1.08000 * 126.03665 * 0.02562 * 11 10 9 26 26 H 1.09002 * 109.52319 * 297.50132 * 16 14 13 27 27 H 1.08995 * 109.52318 * 57.62814 * 16 14 13 28 28 H 1.09000 * 109.50719 * 62.32149 * 17 16 14 29 29 H 1.09003 * 109.50116 * 182.43702 * 17 16 14 30 30 H 1.08999 * 109.41208 * 299.06816 * 18 17 16 31 31 H 1.09000 * 109.46050 * 179.13236 * 18 17 16 32 32 H 1.00895 * 110.99805 * 174.18748 * 19 18 17 33 33 H 1.08997 * 109.46434 * 301.72853 * 20 19 18 34 34 H 1.09006 * 109.45199 * 181.75359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 6 2.7750 -4.1301 1.1202 12 16 3.8476 -5.4541 0.6716 13 6 3.4635 -5.2177 -0.9777 14 6 4.0236 -6.0275 -2.1184 15 1 3.6056 -5.6689 -3.0590 16 6 5.5477 -5.8826 -2.1481 17 6 6.1150 -6.7555 -3.2710 18 6 5.6893 -8.2082 -3.0456 19 7 4.2235 -8.2939 -3.0260 20 6 3.6599 -7.5015 -1.9257 21 7 2.6202 -4.2491 -1.1036 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.5877 -3.7761 2.1232 26 1 5.8111 -4.8404 -2.3285 27 1 5.9628 -6.2030 -1.1926 28 1 5.7309 -6.4093 -4.2305 29 1 7.2030 -6.6896 -3.2687 30 1 6.0864 -8.5584 -2.0929 31 1 6.0787 -8.8300 -3.8518 32 1 3.9181 -9.2541 -2.9735 33 1 4.0665 -7.8549 -0.9782 34 1 2.5753 -7.6100 -1.9186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260927134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = 4.019276 kcal Electronic energy + Delta-G solvation = -16002.374152 eV Core-core repulsion = 13446.020818 eV Total energy + Delta-G solvation = -2556.353333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94066 -39.40060 -35.45362 -33.95607 -32.63421 -31.40498 -29.09638 -26.30865 -25.14232 -24.67500 -22.68446 -21.19474 -20.15037 -18.64460 -18.47221 -17.44279 -16.66743 -16.19061 -15.72359 -15.48957 -15.01387 -14.77408 -14.43708 -14.32255 -14.09594 -13.80970 -13.61101 -13.36649 -12.99287 -12.63373 -12.43058 -12.30722 -11.86331 -11.69472 -11.65268 -11.55574 -11.42090 -10.64869 -10.49442 -10.28597 -9.49007 -9.40865 -8.24496 -6.37777 -0.15047 0.51325 0.80763 1.36916 1.40840 1.48954 1.97091 2.40140 2.91271 3.07402 3.48694 3.77966 3.80590 4.00881 4.23677 4.30796 4.38782 4.43903 4.60023 4.64486 4.66638 4.80104 4.91261 4.96921 5.09298 5.14730 5.22395 5.33999 5.37683 5.44943 5.66758 6.01290 6.09361 6.51270 6.70600 7.00425 7.30008 8.85782 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.004939 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.502159 B = 5668.129579 C = 5911.547392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.093 3.907 10 C 0.079 3.921 11 C -0.275 4.275 12 S 0.151 5.849 13 C 0.044 3.956 14 C -0.006 4.006 15 H 0.086 0.914 16 C -0.113 4.113 17 C -0.113 4.113 18 C 0.055 3.945 19 N -0.695 5.695 20 C 0.075 3.925 21 N -0.504 5.504 22 H 0.268 0.732 23 H 0.001 0.999 24 H 0.021 0.979 25 H 0.181 0.819 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.359 0.641 33 H 0.046 0.954 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.223 -17.794 -2.141 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.067 0.933 9 C 0.053 3.947 10 C -0.051 4.051 11 C -0.414 4.414 12 S 0.404 5.596 13 C -0.235 4.235 14 C -0.029 4.029 15 H 0.104 0.896 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.074 4.074 19 N -0.328 5.328 20 C -0.056 4.056 21 N -0.219 5.219 22 H 0.077 0.923 23 H 0.020 0.980 24 H 0.039 0.961 25 H 0.198 0.802 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.179 0.821 33 H 0.064 0.936 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.438 -17.748 -2.563 22.408 hybrid contribution -0.693 1.494 0.787 1.826 sum 12.744 -16.254 -1.776 20.731 Atomic orbital electron populations 1.70060 1.07639 1.28252 1.50766 1.25907 0.95824 1.03071 0.94276 0.85447 0.78316 0.77866 0.79104 1.19778 1.20069 1.18831 1.21201 0.92766 0.91105 1.51777 0.93267 1.17640 0.91723 0.89074 0.96223 1.20723 0.99760 0.97628 0.86960 1.26917 1.06365 1.03994 1.04080 1.82894 1.43388 1.31197 1.02078 1.27473 0.98485 0.98072 0.99433 1.19873 0.96514 0.93433 0.93082 0.89596 1.21715 0.91837 1.00889 1.00725 1.21594 1.01232 0.94411 0.97829 1.22042 0.86943 0.96979 1.01415 1.60113 1.09911 1.16655 1.46127 1.21815 0.99973 0.90814 0.93014 1.66131 1.13944 1.08943 1.32870 0.92324 0.98024 0.96131 0.80172 0.92416 0.90859 0.91694 0.89056 0.94100 0.88701 0.82068 0.93593 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -31.72 9.09 25.60 0.23 -31.49 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.09 5.32 5.39 29.10 0.16 5.48 16 10 C 0.08 3.82 5.93 41.52 0.25 4.07 16 11 C -0.28 -11.00 11.14 66.78 0.74 -10.26 16 12 S 0.15 4.53 22.45 -56.49 -1.27 3.26 16 13 C 0.04 1.55 6.04 88.52 0.53 2.08 16 14 C -0.01 -0.17 2.78 -11.49 -0.03 -0.20 16 15 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 16 C -0.11 -2.51 5.20 30.68 0.16 -2.35 16 17 C -0.11 -1.88 6.10 30.65 0.19 -1.69 16 18 C 0.06 0.77 6.55 86.33 0.57 1.34 16 19 N -0.69 -12.01 6.85 -513.99 -3.52 -15.53 16 20 C 0.07 1.61 5.73 86.33 0.49 2.10 16 21 N -0.50 -23.05 10.53 -179.41 -1.89 -24.94 16 22 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.18 6.63 8.06 -2.91 -0.02 6.61 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.47 7.87 -2.39 -0.02 1.45 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.36 4.57 8.90 -89.70 -0.80 3.77 16 33 H 0.05 0.89 7.89 -2.39 -0.02 0.87 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -69.77 295.42 -0.32 -70.09 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.29 Total: 6.54 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.75 Total: -30.00 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -5.12 Total: -97.26 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.27 Total: 3.26 kcal Total: -69.77 -0.32 -70.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260927134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.112 kcal (2) G-P(sol) polarization free energy of solvation -69.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds