Wall clock time and date at job start Mon Mar 30 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00423 * 2 1 4 4 H 1.48500 * 109.47194 * 270.00519 * 3 2 1 5 5 H 1.48507 * 109.46666 * 30.00252 * 3 2 1 6 6 H 1.48492 * 109.47406 * 150.00230 * 3 2 1 7 7 C 1.37881 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99856 * 176.16553 * 7 2 1 9 9 C 1.50698 * 119.99933 * 356.16087 * 7 2 1 10 10 H 1.09006 * 109.47054 * 33.19540 * 9 7 2 11 11 C 1.52999 * 109.47326 * 273.19266 * 9 7 2 12 12 C 1.53000 * 109.46966 * 300.00162 * 11 9 7 13 13 C 1.53006 * 109.46961 * 299.99708 * 12 11 9 14 14 C 1.52999 * 109.47042 * 60.00339 * 13 12 11 15 15 C 1.52998 * 109.47164 * 299.99981 * 14 13 12 16 16 H 1.08999 * 109.47165 * 299.99510 * 15 14 13 17 17 C 1.52999 * 109.47164 * 179.97438 * 15 14 13 18 18 H 1.09007 * 109.47519 * 185.73654 * 17 15 14 19 19 O 1.42898 * 109.47193 * 305.73364 * 17 15 14 20 20 C 1.53003 * 109.47302 * 65.73479 * 17 15 14 21 21 F 1.39900 * 109.46807 * 54.38546 * 20 17 15 22 22 F 1.39906 * 109.47174 * 174.38277 * 20 17 15 23 23 F 1.39894 * 109.46988 * 294.38405 * 20 17 15 24 24 H 0.96997 * 119.99822 * 185.96887 * 1 2 3 25 25 H 1.08994 * 109.46729 * 60.00146 * 11 9 7 26 26 H 1.08999 * 109.46680 * 180.02562 * 11 9 7 27 27 H 1.09004 * 109.47016 * 180.02562 * 12 11 9 28 28 H 1.08998 * 109.47254 * 59.99659 * 12 11 9 29 29 H 1.08998 * 109.47618 * 300.00113 * 13 12 11 30 30 H 1.08997 * 109.46950 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47575 * 179.97438 * 14 13 12 32 32 H 1.09008 * 109.47461 * 59.99872 * 14 13 12 33 33 H 0.96701 * 113.99913 * 60.00268 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0828 -1.1951 -0.0631 9 6 1.2535 -2.4977 0.0863 10 1 0.2959 -2.4001 -0.4252 11 6 1.0133 -2.8512 1.5554 12 6 2.3575 -2.9881 2.2733 13 6 3.1793 -4.0953 1.6101 14 6 3.4195 -3.7419 0.1410 15 6 2.0754 -3.6048 -0.5769 16 1 1.5322 -4.5478 -0.5142 17 6 2.3155 -3.2508 -2.0459 18 1 1.3605 -3.0533 -2.5329 19 8 3.1409 -2.0871 -2.1266 20 6 3.0124 -4.4198 -2.7450 21 9 2.2659 -5.5879 -2.5562 22 9 3.1170 -4.1494 -4.1136 23 9 4.2912 -4.5911 -2.2044 24 1 -0.4850 -0.8355 0.0874 25 1 0.4278 -2.0625 2.0277 26 1 0.4705 -3.7943 1.6180 27 1 2.1864 -3.2404 3.3198 28 1 2.9007 -2.0453 2.2105 29 1 2.6362 -5.0383 1.6728 30 1 4.1367 -4.1932 2.1218 31 1 4.0053 -4.5304 -0.3314 32 1 3.9627 -2.7989 0.0782 33 1 4.0087 -2.1909 -1.7126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261124353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:01 Heat of formation + Delta-G solvation = -225.624345 kcal Electronic energy + Delta-G solvation = -20692.922680 eV Core-core repulsion = 17109.708889 eV Total energy + Delta-G solvation = -3583.213790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.88645 -47.41790 -47.32100 -38.87206 -35.76655 -32.78369 -30.95952 -29.40230 -27.68024 -24.35308 -23.14176 -21.69699 -20.75134 -19.09718 -18.30749 -18.17637 -17.74173 -16.10635 -15.40823 -14.89419 -14.70973 -14.18473 -13.85566 -13.78259 -13.69216 -13.52281 -13.47076 -13.39205 -13.20145 -12.94981 -12.03802 -11.75429 -11.28139 -11.04194 -10.79774 -10.71873 -10.62456 -10.41985 -10.07798 -9.96754 -9.80046 -9.26455 -8.93910 -8.31908 -8.14359 -6.21066 -3.88474 3.04828 3.49808 3.52220 3.66277 4.09039 4.23058 4.35815 4.61591 4.98497 5.23739 5.33413 5.48286 5.56734 5.76618 5.91848 6.06754 6.23621 6.25288 6.36109 6.40290 6.44460 6.58861 6.80549 6.83094 7.14140 7.20951 7.36957 7.48759 7.97854 8.28799 8.54692 8.98823 9.77054 11.16608 Molecular weight = 252.11amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.009990 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.670519 B = 2802.243597 C = 3399.451990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.019 3.981 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.039 3.961 10 H 0.032 0.968 11 C -0.105 4.105 12 C -0.106 4.106 13 C -0.106 4.106 14 C -0.129 4.129 15 C -0.105 4.105 16 H 0.061 0.939 17 C 0.098 3.902 18 H 0.129 0.871 19 O -0.498 6.498 20 C 0.408 3.592 21 F -0.187 7.187 22 F -0.187 7.187 23 F -0.184 7.184 24 H 0.267 0.733 25 H 0.053 0.947 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 -8.475 -1.407 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.020 3.980 10 H 0.051 0.949 11 C -0.143 4.143 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.166 4.166 15 C -0.124 4.124 16 H 0.079 0.921 17 C 0.036 3.964 18 H 0.147 0.853 19 O -0.302 6.302 20 C 0.354 3.646 21 F -0.168 7.168 22 F -0.168 7.168 23 F -0.166 7.166 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 5.455 -6.602 -1.817 8.755 hybrid contribution 0.756 -2.220 0.183 2.352 sum 6.211 -8.822 -1.634 10.912 Atomic orbital electron populations 1.70766 1.06910 1.30754 1.47667 1.25578 0.96438 1.02231 0.94100 0.83598 0.74591 0.75778 0.76576 1.21676 1.21659 1.21759 1.21752 0.94226 0.90514 1.52851 0.92687 1.18831 0.95274 0.93002 0.90852 0.94949 1.21614 0.95485 0.97928 0.99315 1.21394 0.97491 0.98996 0.96511 1.21375 0.98980 0.98391 0.95619 1.21882 0.96898 1.01870 0.95971 1.21789 0.98441 1.00456 0.91711 0.92054 1.23031 0.94667 0.81738 0.96980 0.85335 1.86898 1.29996 1.32720 1.80597 1.22523 0.77904 0.86316 0.77864 1.93134 1.76490 1.52231 1.94980 1.93162 1.96138 1.93763 1.33772 1.93058 1.42326 1.96077 1.85139 0.92151 0.92823 0.95838 0.94576 0.90783 0.93408 0.93261 0.92349 0.90606 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 13.62 55.43 0.75 -25.93 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 3 Si 1.06 24.74 29.91 -169.99 -5.08 19.66 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.56 -13.57 4.74 -34.44 -0.16 -13.73 16 8 H 0.06 1.32 5.03 -52.48 -0.26 1.06 16 9 C 0.04 0.86 1.88 -91.77 -0.17 0.69 16 10 H 0.03 0.80 6.62 -51.93 -0.34 0.46 16 11 C -0.11 -2.19 5.44 -26.73 -0.15 -2.34 16 12 C -0.11 -1.98 5.70 -26.73 -0.15 -2.13 16 13 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 14 C -0.13 -2.18 4.02 -26.73 -0.11 -2.29 16 15 C -0.11 -1.93 1.84 -90.62 -0.17 -2.10 16 16 H 0.06 1.09 7.49 -51.93 -0.39 0.70 16 17 C 0.10 1.75 2.79 -26.73 -0.07 1.68 16 18 H 0.13 2.37 8.14 -51.92 -0.42 1.94 16 19 O -0.50 -9.59 10.53 -35.23 -0.37 -9.96 16 20 C 0.41 6.58 2.83 37.16 0.11 6.68 16 21 F -0.19 -2.98 16.48 2.25 0.04 -2.94 16 22 F -0.19 -3.09 17.31 2.25 0.04 -3.05 16 23 F -0.18 -2.86 13.65 2.25 0.03 -2.83 16 24 H 0.27 7.65 6.65 -40.82 -0.27 7.38 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.51 7.22 -51.93 -0.37 1.13 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.91 5.47 -51.93 -0.28 0.63 16 32 H 0.08 1.34 4.98 -51.92 -0.26 1.09 16 33 H 0.37 6.16 6.38 45.56 0.29 6.46 16 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -27.41 262.12 -5.00 -32.41 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.23 Total: 3.71 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.13 Total: -15.01 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.75 Total: -25.93 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.37 Total: -9.96 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 0.11 Total: -8.83 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.41 -5.00 -32.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.217 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds